Wall clock time and date at job start Wed Apr 1 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99537 * 2 1 4 4 H 1.09000 * 109.47318 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47238 * 120.00001 * 3 2 1 6 6 C 1.50698 * 109.46933 * 294.99813 * 5 3 2 7 7 O 1.21278 * 120.00153 * 359.97438 * 6 5 3 8 8 N 1.34777 * 119.99931 * 180.02562 * 6 5 3 9 9 C 1.47155 * 120.98357 * 359.71578 * 8 6 5 10 10 C 1.52879 * 108.60915 * 230.50563 * 9 8 6 11 11 O 1.42968 * 109.29514 * 307.93166 * 10 9 8 12 12 C 1.42962 * 114.16520 * 62.44819 * 11 10 9 13 13 H 1.09005 * 109.51138 * 57.34746 * 12 11 10 14 14 C 1.52996 * 109.51169 * 177.49287 * 12 11 10 15 15 N 1.46500 * 109.47398 * 299.74865 * 14 12 11 16 16 C 1.36937 * 120.00009 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00675 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99903 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00078 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00047 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47076 * 60.00361 * 20 18 16 22 22 H 1.48493 * 109.47265 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47480 * 300.00583 * 20 18 16 24 24 C 1.47152 * 120.98299 * 180.02562 * 8 6 5 25 25 C 1.50699 * 109.46817 * 239.99831 * 3 2 1 26 26 C 1.38237 * 119.99936 * 299.72693 * 25 3 2 27 27 C 1.38235 * 119.99794 * 179.76601 * 26 25 3 28 28 C 1.38234 * 120.00373 * 0.48497 * 27 26 25 29 29 C 1.38239 * 119.99789 * 359.79157 * 28 27 26 30 30 C 1.38236 * 120.00068 * 120.00107 * 25 3 2 31 31 H 1.08002 * 119.99293 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00323 * 0.02562 * 1 2 3 33 33 H 1.08000 * 120.00554 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.47192 * 54.99616 * 5 3 2 35 35 H 1.09000 * 109.47325 * 174.99731 * 5 3 2 36 36 H 1.09005 * 109.67546 * 350.28141 * 9 8 6 37 37 H 1.09003 * 109.68011 * 110.83304 * 9 8 6 38 38 H 1.09001 * 109.58151 * 187.92338 * 10 9 8 39 39 H 1.08991 * 109.41238 * 67.83974 * 10 9 8 40 40 H 1.09001 * 109.47150 * 59.74817 * 14 12 11 41 41 H 1.09004 * 109.47568 * 179.74768 * 14 12 11 42 42 H 0.96993 * 119.99965 * 0.02562 * 15 14 12 43 43 H 0.96991 * 119.99993 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.67927 * 249.16387 * 24 8 6 45 45 H 1.08997 * 109.68254 * 9.71674 * 24 8 6 46 46 H 1.07991 * 120.00264 * 359.97438 * 26 25 3 47 47 H 1.08002 * 120.00025 * 180.25127 * 27 26 25 48 48 H 1.07998 * 120.00494 * 179.76721 * 28 27 26 49 49 H 1.08000 * 120.00358 * 179.97438 * 29 28 27 50 50 H 1.08000 * 119.99861 * 0.02562 * 30 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1337 -0.0005 5 6 2.9430 1.3864 1.2492 6 6 2.0696 1.4302 2.4765 7 8 0.8625 1.4001 2.3632 8 7 2.6300 1.5040 3.7001 9 6 4.0921 1.5367 3.8629 10 6 4.4923 0.4777 4.8904 11 8 3.7166 0.6549 6.0781 12 6 2.3099 0.4832 5.8895 13 1 2.1158 -0.5087 5.4813 14 6 1.5921 0.6337 7.2322 15 7 2.0821 -0.3843 8.1648 16 6 1.5811 -0.4446 9.4378 17 1 0.8245 0.2580 9.7543 18 6 2.0450 -1.4097 10.3213 19 7 2.9668 -2.2664 9.9356 20 14 1.3611 -1.4924 12.0576 21 1 -0.1035 -1.7315 12.0018 22 1 2.0165 -2.6019 12.7954 23 1 1.6268 -0.2092 12.7560 24 6 1.7979 1.5475 4.9129 25 6 2.9298 1.3850 -1.2305 26 6 3.9128 0.4373 -1.4463 27 6 4.7043 0.5078 -2.5774 28 6 4.5196 1.5316 -3.4877 29 6 3.5404 2.4826 -3.2690 30 6 2.7454 2.4091 -2.1404 31 1 -0.5399 -0.9354 0.0004 32 1 -0.5400 0.9352 -0.0004 33 1 1.8501 -0.9353 0.0004 34 1 3.5905 0.5107 1.2952 35 1 3.5539 2.2881 1.2055 36 1 4.5726 1.3208 2.9087 37 1 4.4003 2.5211 4.2153 38 1 5.5510 0.5812 5.1282 39 1 4.3069 -0.5144 4.4790 40 1 1.7890 1.6251 7.6403 41 1 0.5193 0.5071 7.0870 42 1 2.7619 -1.0152 7.8808 43 1 3.2912 -2.9404 10.5530 44 1 1.8708 2.5329 5.3730 45 1 0.7599 1.3387 4.6537 46 1 4.0601 -0.3600 -0.7330 47 1 5.4696 -0.2349 -2.7481 48 1 5.1404 1.5888 -4.3695 49 1 3.3963 3.2827 -3.9799 50 1 1.9806 3.1523 -1.9693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724828664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:11 Heat of formation + Delta-G solvation = -17.064700 kcal Electronic energy + Delta-G solvation = -29690.752129 eV Core-core repulsion = 25683.902758 eV Total energy + Delta-G solvation = -4006.849371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61506 -39.67743 -38.37812 -35.85140 -35.03162 -34.34743 -32.28860 -31.62722 -31.24131 -30.43268 -29.81443 -27.99043 -25.98179 -24.45290 -23.47098 -23.01906 -22.34747 -21.65072 -20.85710 -19.80327 -19.00119 -17.74866 -17.13553 -16.80889 -16.51325 -16.01183 -15.85336 -15.52126 -15.21643 -15.03310 -14.65618 -14.57494 -14.31221 -14.08321 -13.68040 -13.63973 -13.50496 -13.16250 -13.12032 -12.86424 -12.62818 -12.49429 -12.21615 -12.11921 -11.85070 -11.60115 -11.55257 -11.22990 -10.99144 -10.89899 -10.88246 -10.76571 -10.45914 -10.11229 -9.91851 -9.83369 -9.64918 -9.31591 -9.24314 -9.01717 -8.84214 -8.51065 -6.87134 -5.70876 -2.99462 1.00878 1.07461 2.29419 2.55398 2.78976 3.46677 3.47843 3.51612 3.52987 3.95090 4.19472 4.38770 4.59506 4.62442 4.66268 4.70173 4.75317 4.78304 4.82603 4.88596 5.06512 5.08560 5.12203 5.17164 5.19386 5.26707 5.31443 5.36524 5.51771 5.61422 5.61602 5.65699 5.67299 5.71371 5.75671 5.86401 5.90033 5.97743 6.13849 6.19071 6.29022 6.31871 6.34046 6.56008 6.57624 6.68016 6.71262 6.75963 7.27129 7.47121 7.73252 8.07717 8.47338 9.58928 10.16340 10.52472 11.51880 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.001955 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.802095 B =14318.352745 C =14696.836161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C -0.002 4.002 4 H 0.089 0.911 5 C -0.129 4.129 6 C 0.515 3.485 7 O -0.531 6.531 8 N -0.615 5.615 9 C 0.072 3.928 10 C 0.045 3.955 11 O -0.356 6.356 12 C 0.074 3.926 13 H 0.062 0.938 14 C 0.163 3.837 15 N -0.726 5.726 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.086 3.914 25 C -0.070 4.070 26 C -0.113 4.113 27 C -0.118 4.118 28 C -0.126 4.126 29 C -0.119 4.119 30 C -0.115 4.115 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.035 0.965 42 H 0.388 0.612 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 9.203 -28.853 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C -0.021 4.021 4 H 0.107 0.893 5 C -0.169 4.169 6 C 0.303 3.697 7 O -0.407 6.407 8 N -0.350 5.350 9 C -0.052 4.052 10 C -0.033 4.033 11 O -0.274 6.274 12 C 0.015 3.985 13 H 0.080 0.920 14 C 0.035 3.965 15 N -0.370 5.370 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.037 4.037 25 C -0.070 4.070 26 C -0.131 4.131 27 C -0.136 4.136 28 C -0.144 4.144 29 C -0.137 4.137 30 C -0.133 4.133 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.222 0.778 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.119 0.881 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.921 9.265 -28.584 30.302 hybrid contribution 0.009 -0.394 0.659 0.768 sum 3.930 8.871 -27.925 29.562 Atomic orbital electron populations 1.23728 0.95796 1.01602 0.98065 1.22549 0.95984 0.96487 1.02316 1.19070 0.95189 0.97901 0.89923 0.89253 1.21728 0.98606 1.04456 0.92064 1.20574 0.89004 0.75974 0.84099 1.90707 1.14635 1.49327 1.86003 1.48192 1.07036 1.73642 1.06146 1.22428 0.80419 1.01330 1.00995 1.22833 0.96915 0.96986 0.86564 1.88173 1.17289 1.91604 1.30366 1.22781 0.81716 0.97032 0.96948 0.92014 1.20624 0.94958 0.94140 0.86766 1.42200 1.48451 1.36126 1.10221 1.19188 1.17174 1.12208 0.88506 0.91202 1.24746 0.99360 0.98449 0.98457 1.69664 1.32268 1.20764 1.35381 0.86247 0.78218 0.77015 0.84573 1.21294 1.21721 1.21282 1.22304 0.96617 1.00370 0.84393 1.19799 0.96085 0.95156 0.96004 1.21026 0.95590 0.98727 0.97763 1.21158 0.99521 0.98428 0.94524 1.21155 0.98523 0.95229 0.99482 1.21145 0.95977 0.99050 0.97502 1.21091 0.99697 0.98110 0.94397 0.88830 0.88491 0.87805 0.88687 0.88638 0.89169 0.90395 0.87781 0.92940 0.95405 0.94717 0.77845 0.93532 0.90582 0.88078 0.86079 0.86089 0.86252 0.86137 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 13.22 29.01 0.38 -1.28 16 2 C -0.16 -1.57 7.42 -36.02 -0.27 -1.83 16 3 C 0.00 -0.02 1.99 -92.92 -0.18 -0.20 16 4 H 0.09 0.89 7.33 -51.93 -0.38 0.51 16 5 C -0.13 -1.10 3.28 -27.89 -0.09 -1.19 16 6 C 0.52 6.30 7.46 -10.99 -0.08 6.22 16 7 O -0.53 -8.10 13.64 5.56 0.08 -8.02 16 8 N -0.62 -7.57 3.03 -172.55 -0.52 -8.09 16 9 C 0.07 0.70 6.51 -3.75 -0.02 0.67 16 10 C 0.05 0.55 6.97 37.10 0.26 0.81 16 11 O -0.36 -6.23 10.14 -35.23 -0.36 -6.59 16 12 C 0.07 1.28 2.86 -26.60 -0.08 1.20 16 13 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.16 3.40 5.95 -4.04 -0.02 3.38 16 15 N -0.73 -19.12 5.50 -59.91 -0.33 -19.45 16 16 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 20 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.09 1.24 5.93 -3.56 -0.02 1.22 16 25 C -0.07 -0.58 4.77 -104.62 -0.50 -1.08 16 26 C -0.11 -0.86 8.87 -39.58 -0.35 -1.21 16 27 C -0.12 -0.83 10.05 -39.58 -0.40 -1.22 16 28 C -0.13 -0.85 10.05 -39.58 -0.40 -1.25 16 29 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 30 C -0.11 -0.90 9.67 -39.58 -0.38 -1.28 16 31 H 0.09 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.10 1.07 7.83 -52.49 -0.41 0.65 16 33 H 0.10 0.97 8.05 -52.49 -0.42 0.55 16 34 H 0.09 0.69 7.06 -51.93 -0.37 0.32 16 35 H 0.10 0.68 8.02 -51.93 -0.42 0.26 16 36 H 0.09 0.60 6.05 -51.93 -0.31 0.29 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.39 10.85 7.55 -40.82 -0.31 10.54 16 43 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.10 1.53 7.08 -51.93 -0.37 1.16 16 46 H 0.12 0.79 7.62 -52.49 -0.40 0.39 16 47 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 49 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 50 H 0.12 0.81 7.95 -52.49 -0.42 0.40 16 LS Contribution 406.67 15.07 6.13 6.13 Total: -1.00 -34.48 406.67 -10.11 -44.59 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.00 Total: 7.59 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.80 Total: -5.84 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.13 Total: -55.64 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.28 Total: -14.61 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.48 -10.11 -44.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724828664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.520 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds