Wall clock time and date at job start Wed Apr 1 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99537 * 2 1 4 4 H 1.09000 * 109.47318 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47238 * 120.00001 * 3 2 1 6 6 C 1.50698 * 109.46933 * 294.99813 * 5 3 2 7 7 O 1.21278 * 120.00153 * 359.97438 * 6 5 3 8 8 N 1.34777 * 119.99931 * 180.02562 * 6 5 3 9 9 C 1.47155 * 120.98357 * 359.71578 * 8 6 5 10 10 C 1.52879 * 108.60915 * 230.50563 * 9 8 6 11 11 O 1.42968 * 109.29514 * 307.93166 * 10 9 8 12 12 C 1.42962 * 114.16520 * 62.44819 * 11 10 9 13 13 H 1.09005 * 109.51138 * 57.34746 * 12 11 10 14 14 C 1.52996 * 109.51169 * 177.49287 * 12 11 10 15 15 N 1.46500 * 109.47398 * 299.74865 * 14 12 11 16 16 C 1.36937 * 120.00009 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00675 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99903 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00078 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00047 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47076 * 60.00361 * 20 18 16 22 22 H 1.48493 * 109.47265 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47480 * 300.00583 * 20 18 16 24 24 C 1.47152 * 120.98299 * 180.02562 * 8 6 5 25 25 C 1.50699 * 109.46817 * 239.99831 * 3 2 1 26 26 C 1.38237 * 119.99936 * 299.72693 * 25 3 2 27 27 C 1.38235 * 119.99794 * 179.76601 * 26 25 3 28 28 C 1.38234 * 120.00373 * 0.48497 * 27 26 25 29 29 C 1.38239 * 119.99789 * 359.79157 * 28 27 26 30 30 C 1.38236 * 120.00068 * 120.00107 * 25 3 2 31 31 H 1.08002 * 119.99293 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00323 * 0.02562 * 1 2 3 33 33 H 1.08000 * 120.00554 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.47192 * 54.99616 * 5 3 2 35 35 H 1.09000 * 109.47325 * 174.99731 * 5 3 2 36 36 H 1.09005 * 109.67546 * 350.28141 * 9 8 6 37 37 H 1.09003 * 109.68011 * 110.83304 * 9 8 6 38 38 H 1.09001 * 109.58151 * 187.92338 * 10 9 8 39 39 H 1.08991 * 109.41238 * 67.83974 * 10 9 8 40 40 H 1.09001 * 109.47150 * 59.74817 * 14 12 11 41 41 H 1.09004 * 109.47568 * 179.74768 * 14 12 11 42 42 H 0.96993 * 119.99965 * 0.02562 * 15 14 12 43 43 H 0.96991 * 119.99993 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.67927 * 249.16387 * 24 8 6 45 45 H 1.08997 * 109.68254 * 9.71674 * 24 8 6 46 46 H 1.07991 * 120.00264 * 359.97438 * 26 25 3 47 47 H 1.08002 * 120.00025 * 180.25127 * 27 26 25 48 48 H 1.07998 * 120.00494 * 179.76721 * 28 27 26 49 49 H 1.08000 * 120.00358 * 179.97438 * 29 28 27 50 50 H 1.08000 * 119.99861 * 0.02562 * 30 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1337 -0.0005 5 6 2.9430 1.3864 1.2492 6 6 2.0696 1.4302 2.4765 7 8 0.8625 1.4001 2.3632 8 7 2.6300 1.5040 3.7001 9 6 4.0921 1.5367 3.8629 10 6 4.4923 0.4777 4.8904 11 8 3.7166 0.6549 6.0781 12 6 2.3099 0.4832 5.8895 13 1 2.1158 -0.5087 5.4813 14 6 1.5921 0.6337 7.2322 15 7 2.0821 -0.3843 8.1648 16 6 1.5811 -0.4446 9.4378 17 1 0.8245 0.2580 9.7543 18 6 2.0450 -1.4097 10.3213 19 7 2.9668 -2.2664 9.9356 20 14 1.3611 -1.4924 12.0576 21 1 -0.1035 -1.7315 12.0018 22 1 2.0165 -2.6019 12.7954 23 1 1.6268 -0.2092 12.7560 24 6 1.7979 1.5475 4.9129 25 6 2.9298 1.3850 -1.2305 26 6 3.9128 0.4373 -1.4463 27 6 4.7043 0.5078 -2.5774 28 6 4.5196 1.5316 -3.4877 29 6 3.5404 2.4826 -3.2690 30 6 2.7454 2.4091 -2.1404 31 1 -0.5399 -0.9354 0.0004 32 1 -0.5400 0.9352 -0.0004 33 1 1.8501 -0.9353 0.0004 34 1 3.5905 0.5107 1.2952 35 1 3.5539 2.2881 1.2055 36 1 4.5726 1.3208 2.9087 37 1 4.4003 2.5211 4.2153 38 1 5.5510 0.5812 5.1282 39 1 4.3069 -0.5144 4.4790 40 1 1.7890 1.6251 7.6403 41 1 0.5193 0.5071 7.0870 42 1 2.7619 -1.0152 7.8808 43 1 3.2912 -2.9404 10.5530 44 1 1.8708 2.5329 5.3730 45 1 0.7599 1.3387 4.6537 46 1 4.0601 -0.3600 -0.7330 47 1 5.4696 -0.2349 -2.7481 48 1 5.1404 1.5888 -4.3695 49 1 3.3963 3.2827 -3.9799 50 1 1.9806 3.1523 -1.9693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724828664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:10 Heat of formation + Delta-G solvation = -37.772451 kcal Electronic energy + Delta-G solvation = -29691.650085 eV Core-core repulsion = 25683.902758 eV Total energy + Delta-G solvation = -4007.747327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.55891 -40.38046 -39.43536 -36.70806 -36.53330 -35.67639 -33.94949 -32.41863 -31.94947 -31.73432 -30.65517 -29.19241 -27.36481 -25.58206 -24.73222 -23.83804 -23.51429 -22.35382 -22.19832 -20.62320 -19.87529 -19.24011 -18.49451 -17.73166 -17.51314 -17.07864 -16.77394 -16.65869 -16.18288 -15.97520 -15.92489 -15.68203 -15.38202 -15.02353 -14.88401 -14.82676 -14.28846 -14.26082 -14.16242 -14.03738 -13.84601 -13.44517 -13.37802 -13.02093 -12.91703 -12.75579 -12.64389 -12.48114 -12.27534 -12.16804 -12.06864 -11.87910 -11.80856 -11.60866 -11.55265 -11.17247 -10.94976 -10.80617 -10.13382 -9.75887 -9.57462 -9.56645 -9.01234 -7.94043 -5.23701 0.47172 0.56079 1.47282 1.49119 1.51375 1.57284 1.62841 1.84270 2.56526 2.76827 2.93606 3.39204 3.40919 3.59230 3.71173 3.90991 3.93600 4.00409 4.07677 4.11191 4.15071 4.19821 4.26909 4.31396 4.35595 4.38093 4.40717 4.48173 4.56168 4.67367 4.67455 4.68896 4.75314 4.78292 4.89114 4.95051 4.95501 5.07743 5.08738 5.15835 5.23507 5.31248 5.47712 5.63196 5.69374 5.75663 5.76895 5.97252 6.17610 6.24023 6.28116 6.35199 7.13303 7.33310 8.07257 8.32489 9.29412 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.001955 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.802095 B =14318.352745 C =14696.836161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C 0.003 3.997 4 H 0.075 0.925 5 C -0.120 4.120 6 C 0.511 3.489 7 O -0.566 6.566 8 N -0.618 5.618 9 C 0.076 3.924 10 C 0.036 3.964 11 O -0.389 6.389 12 C 0.089 3.911 13 H 0.046 0.954 14 C 0.160 3.840 15 N -0.739 5.739 16 C -0.250 4.250 17 H 0.077 0.923 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 0.978 3.022 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.277 1.277 24 C 0.097 3.903 25 C -0.079 4.079 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.131 4.131 29 C -0.126 4.126 30 C -0.129 4.129 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.050 0.950 40 H 0.029 0.971 41 H 0.041 0.959 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 10.065 -30.168 32.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.171 4.171 3 C -0.015 4.015 4 H 0.093 0.907 5 C -0.160 4.160 6 C 0.301 3.699 7 O -0.445 6.445 8 N -0.352 5.352 9 C -0.046 4.046 10 C -0.041 4.041 11 O -0.308 6.308 12 C 0.030 3.970 13 H 0.064 0.936 14 C 0.033 3.967 15 N -0.382 5.382 16 C -0.381 4.381 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.619 5.619 20 Si 0.807 3.193 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.203 1.203 24 C -0.027 4.027 25 C -0.079 4.079 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.149 4.149 29 C -0.144 4.144 30 C -0.147 4.147 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.144 0.856 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.150 0.850 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.154 0.846 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.284 10.169 -29.930 32.048 hybrid contribution -0.383 -0.633 0.970 1.219 sum 4.901 9.536 -28.960 30.881 Atomic orbital electron populations 1.23765 0.96390 1.01375 0.99614 1.22784 0.95897 0.97508 1.00921 1.18968 0.95100 0.96665 0.90806 0.90700 1.21765 0.98115 1.06519 0.89557 1.21261 0.89001 0.74833 0.84805 1.90702 1.16467 1.50837 1.86491 1.48290 1.08010 1.73449 1.05417 1.22587 0.78818 1.01025 1.02166 1.23163 0.97371 0.97925 0.85645 1.88105 1.17234 1.91848 1.33577 1.22423 0.82117 0.97195 0.95254 0.93596 1.20771 0.95606 0.92571 0.87798 1.42383 1.48225 1.37070 1.10520 1.19637 1.16904 1.11976 0.89606 0.90472 1.25634 1.00128 0.98451 1.02701 1.69832 1.33894 1.21579 1.36633 0.85145 0.77725 0.77001 0.79465 1.20302 1.22011 1.20306 1.21990 0.96351 0.99449 0.84925 1.19719 0.96469 0.95883 0.95790 1.21193 0.95459 0.98775 0.98359 1.21436 0.99757 0.98838 0.94258 1.21465 0.98483 0.94907 1.00068 1.21396 0.95831 0.99664 0.97518 1.21260 1.00176 0.98384 0.94848 0.88547 0.89439 0.86899 0.86543 0.86284 0.85256 0.89247 0.85584 0.93122 0.95281 0.94146 0.79280 0.93978 0.89960 0.89161 0.85038 0.84373 0.84426 0.84593 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 13.22 67.78 0.90 -2.93 16 2 C -0.15 -2.99 7.42 25.65 0.19 -2.80 16 3 C 0.00 0.06 1.99 -12.29 -0.02 0.03 16 4 H 0.07 1.47 7.33 -2.39 -0.02 1.46 16 5 C -0.12 -1.74 3.28 29.85 0.10 -1.64 16 6 C 0.51 11.75 7.46 87.66 0.65 12.41 16 7 O -0.57 -17.25 13.64 -3.02 -0.04 -17.29 16 8 N -0.62 -14.16 3.03 -818.23 -2.48 -16.64 16 9 C 0.08 1.25 6.51 86.21 0.56 1.81 16 10 C 0.04 0.81 6.97 71.94 0.50 1.31 16 11 O -0.39 -13.47 10.14 -148.98 -1.51 -14.98 16 12 C 0.09 3.10 2.86 30.68 0.09 3.18 16 13 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 14 C 0.16 6.74 5.95 86.38 0.51 7.25 16 15 N -0.74 -39.74 5.50 -343.45 -1.89 -41.63 16 16 C -0.25 -14.48 9.99 84.04 0.84 -13.64 16 17 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 19 N -0.97 -60.94 13.06 21.65 0.28 -60.65 16 20 Si 0.98 47.14 29.55 68.60 2.03 49.16 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 C 0.10 2.75 5.93 86.34 0.51 3.26 16 25 C -0.08 -1.15 4.77 -19.87 -0.09 -1.25 16 26 C -0.12 -1.52 8.87 22.27 0.20 -1.33 16 27 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 28 C -0.13 -1.46 10.05 22.27 0.22 -1.24 16 29 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 30 C -0.13 -1.83 9.67 22.27 0.22 -1.62 16 31 H 0.10 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.09 2.04 7.83 -2.91 -0.02 2.01 16 33 H 0.11 1.96 8.05 -2.91 -0.02 1.93 16 34 H 0.12 1.23 7.06 -2.39 -0.02 1.22 16 35 H 0.12 1.23 8.02 -2.39 -0.02 1.21 16 36 H 0.13 1.13 6.05 -2.38 -0.01 1.12 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.38 21.65 7.55 -92.71 -0.70 20.95 16 43 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.09 2.77 7.08 -2.39 -0.02 2.75 16 46 H 0.13 1.32 7.62 -2.92 -0.02 1.30 16 47 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 48 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 49 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 50 H 0.12 1.58 7.95 -2.91 -0.02 1.56 16 Total: -1.00 -75.71 406.67 2.90 -72.81 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.22 Total: 32.98 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 6.29 Total: -3.76 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -4.08 Total: -118.92 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.55 Total: -32.27 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -75.71 2.90 -72.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724828664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.038 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds