Wall clock time and date at job start Wed Apr 1 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00397 * 2 1 4 4 H 1.09004 * 109.46757 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47077 * 239.99962 * 3 2 1 6 6 C 1.50702 * 109.46998 * 65.00143 * 5 3 2 7 7 O 1.21277 * 119.99905 * 359.97438 * 6 5 3 8 8 N 1.34775 * 119.99790 * 179.97438 * 6 5 3 9 9 C 1.46496 * 119.99987 * 174.81240 * 8 6 5 10 10 C 1.53000 * 112.94780 * 295.20137 * 9 8 6 11 11 C 1.52997 * 109.46994 * 304.14823 * 10 9 8 12 12 O 1.42898 * 109.47472 * 178.59623 * 11 10 9 13 13 C 1.53945 * 113.74372 * 163.60613 * 9 8 6 14 14 N 1.47806 * 86.03973 * 222.08947 * 13 9 8 15 15 C 1.36943 * 134.45813 * 204.65114 * 14 13 9 16 16 H 1.07997 * 119.99949 * 179.86057 * 15 14 13 17 17 C 1.38808 * 119.99625 * 359.85594 * 15 14 13 18 18 N 1.31619 * 120.00504 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99659 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47220 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46982 * 120.00432 * 19 17 15 22 22 H 1.48493 * 109.47193 * 240.00010 * 19 17 15 23 23 C 1.47582 * 91.05310 * 24.54915 * 14 13 9 24 24 C 1.50705 * 109.46962 * 119.99878 * 3 2 1 25 25 C 1.38238 * 119.99928 * 59.72831 * 24 3 2 26 26 C 1.38234 * 119.99662 * 179.78540 * 25 24 3 27 27 C 1.38236 * 119.99951 * 0.44241 * 26 25 24 28 28 C 1.38234 * 120.00032 * 359.81501 * 27 26 25 29 29 C 1.38229 * 120.00424 * 359.97160 * 28 27 26 30 30 H 1.07993 * 120.00416 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.99792 * 0.02562 * 1 2 3 32 32 H 1.08008 * 119.99792 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47662 * 304.99778 * 5 3 2 34 34 H 1.09002 * 109.46811 * 184.99667 * 5 3 2 35 35 H 0.97000 * 120.00293 * 355.09377 * 8 6 5 36 36 H 1.08998 * 109.46875 * 64.14478 * 10 9 8 37 37 H 1.09004 * 109.47274 * 184.14601 * 10 9 8 38 38 H 1.09005 * 109.47005 * 298.59660 * 11 10 9 39 39 H 1.09002 * 109.47366 * 58.59232 * 11 10 9 40 40 H 0.96693 * 114.00269 * 179.97438 * 12 11 10 41 41 H 1.09002 * 113.76616 * 336.35120 * 13 9 8 42 42 H 1.09005 * 113.77125 * 107.74609 * 13 9 8 43 43 H 0.96999 * 120.00206 * 179.97438 * 18 17 15 44 44 H 1.09005 * 113.76784 * 221.15697 * 23 14 13 45 45 H 1.08994 * 113.87315 * 89.76694 * 23 14 13 46 46 H 1.07996 * 120.00035 * 0.02562 * 25 24 3 47 47 H 1.08004 * 119.99895 * 180.27478 * 26 25 24 48 48 H 1.08001 * 119.99706 * 179.83326 * 27 26 25 49 49 H 1.08007 * 119.99607 * 180.02562 * 28 27 26 50 50 H 1.08000 * 120.00423 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3860 -1.2492 6 6 2.0698 1.4300 -2.4765 7 8 0.8627 1.3991 -2.3632 8 7 2.6302 1.5037 -3.7001 9 6 1.7883 1.4319 -4.8968 10 6 1.0896 0.0799 -5.0544 11 6 2.1348 -1.0375 -5.0533 12 8 1.4800 -2.3024 -5.1677 13 6 2.4887 1.9206 -6.1776 14 7 1.2122 2.5944 -6.4959 15 6 0.6088 3.0087 -7.6533 16 1 -0.3574 3.4897 -7.6163 17 6 1.2393 2.8104 -8.8740 18 7 2.4167 2.2239 -8.9191 19 14 0.4166 3.3762 -10.4528 20 1 -0.8913 4.0023 -10.1326 21 1 1.2856 4.3679 -11.1359 22 1 0.2018 2.2087 -11.3449 23 6 0.8479 2.6390 -5.0664 24 6 2.9300 1.3848 1.2305 25 6 3.9053 0.4306 1.4521 26 6 4.7029 0.5063 2.5786 27 6 4.5191 1.5310 3.4881 28 6 3.5403 2.4822 3.2691 29 6 2.7455 2.4090 2.1405 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 3.5906 0.5104 -1.2952 34 1 3.5541 2.2877 -1.2055 35 1 3.5913 1.6001 -3.7883 36 1 0.3969 -0.0698 -4.2263 37 1 0.5401 0.0624 -5.9956 38 1 2.8127 -0.9017 -5.8961 39 1 2.7011 -1.0043 -4.1225 40 1 2.0830 -3.0583 -5.1738 41 1 3.3139 2.6082 -5.9920 42 1 2.7484 1.1193 -6.8695 43 1 2.8570 2.0850 -9.7721 44 1 -0.2001 2.4101 -4.8727 45 1 1.1892 3.5373 -4.5521 46 1 4.0467 -0.3718 0.7433 47 1 5.4679 -0.2367 2.7495 48 1 5.1406 1.5886 4.3695 49 1 3.3970 3.2830 3.9795 50 1 1.9810 3.1524 1.9692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734076075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:21 Heat of formation + Delta-G solvation = -11.554582 kcal Electronic energy + Delta-G solvation = -30379.061821 eV Core-core repulsion = 26372.451386 eV Total energy + Delta-G solvation = -4006.610435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50392 -40.40644 -39.25848 -37.69052 -36.44136 -35.16807 -33.78744 -32.33305 -31.87421 -31.70193 -30.33525 -28.94651 -26.83569 -25.95877 -24.73820 -23.51665 -23.27744 -22.27286 -21.57060 -20.18625 -20.07628 -18.77979 -18.43106 -18.25744 -17.46258 -17.05233 -16.68928 -16.40779 -16.20991 -15.93467 -15.77375 -15.49572 -15.41528 -15.04195 -14.64882 -14.47638 -14.37110 -14.14519 -13.96195 -13.72538 -13.38457 -13.31351 -13.19108 -12.95362 -12.82262 -12.70812 -12.57273 -12.49935 -12.23003 -12.11066 -11.99580 -11.77333 -11.72583 -11.49910 -11.36649 -10.97215 -10.87637 -10.62081 -10.04312 -9.90021 -9.73261 -9.52867 -8.96162 -7.94138 -5.26884 0.50642 0.58748 1.44847 1.45697 1.55814 1.57822 1.86494 2.22162 2.50088 2.97321 3.16906 3.26452 3.39443 3.64021 3.76356 3.83162 4.08874 4.14875 4.17215 4.22226 4.28544 4.33373 4.35038 4.37669 4.47565 4.51193 4.59640 4.70922 4.72527 4.73611 4.80646 4.83404 4.87536 5.02676 5.07078 5.13618 5.14656 5.19191 5.21073 5.24457 5.27173 5.47583 5.65764 5.71337 5.77892 5.80401 5.83594 5.89793 6.05547 6.20603 6.76855 6.90070 6.92455 7.48678 7.55982 8.49739 9.22885 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.002441 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.301047 B =11468.132165 C =11993.921945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.147 4.147 3 C 0.003 3.997 4 H 0.070 0.930 5 C -0.120 4.120 6 C 0.509 3.491 7 O -0.560 6.560 8 N -0.711 5.711 9 C 0.160 3.840 10 C -0.086 4.086 11 C 0.093 3.907 12 O -0.593 6.593 13 C 0.171 3.829 14 N -0.634 5.634 15 C -0.235 4.235 16 H 0.077 0.923 17 C -0.059 4.059 18 N -0.947 5.947 19 Si 0.977 3.023 20 H -0.271 1.271 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.128 3.872 24 C -0.078 4.078 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.132 4.132 28 C -0.127 4.127 29 C -0.132 4.132 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.413 0.587 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.396 0.604 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.251 0.749 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.135 0.865 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.135 0.865 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 -6.072 24.401 26.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C -0.016 4.016 4 H 0.088 0.912 5 C -0.160 4.160 6 C 0.296 3.704 7 O -0.437 6.437 8 N -0.364 5.364 9 C 0.073 3.927 10 C -0.125 4.125 11 C 0.016 3.984 12 O -0.401 6.401 13 C 0.046 3.954 14 N -0.361 5.361 15 C -0.364 4.364 16 H 0.095 0.905 17 C -0.253 4.253 18 N -0.595 5.595 19 Si 0.805 3.195 20 H -0.195 1.195 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.001 3.999 24 C -0.078 4.078 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.150 4.150 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.250 0.750 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.246 0.754 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.153 0.847 47 H 0.158 0.842 48 H 0.156 0.844 49 H 0.153 0.847 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.509 -5.666 24.142 25.910 hybrid contribution 0.219 0.366 -1.339 1.406 sum 7.729 -5.300 22.803 24.653 Atomic orbital electron populations 1.23721 0.96493 1.01133 0.99920 1.22734 0.95697 0.97392 1.00623 1.18953 0.95065 0.96709 0.90859 0.91180 1.21719 0.98024 1.06513 0.89713 1.21192 0.89219 0.74968 0.84980 1.90708 1.16411 1.49736 1.86866 1.46001 1.11179 1.74782 1.04448 1.22064 0.92304 0.93559 0.84818 1.21150 0.98148 0.91955 1.01278 1.21947 0.93749 0.82584 1.00138 1.86439 1.39638 1.16722 1.97327 1.22459 0.88525 0.94307 0.90141 1.46044 1.19588 1.69805 1.00635 1.19331 1.00923 1.32282 0.83818 0.90482 1.25542 0.97682 1.01755 1.00289 1.69941 1.16207 1.48563 1.24809 0.85038 0.77803 0.77235 0.79408 1.19515 1.21530 1.21682 1.22842 0.97482 0.95291 0.84247 1.19764 0.96583 0.95755 0.95706 1.21208 0.95348 0.98717 0.98376 1.21447 0.99685 0.98841 0.94283 1.21459 0.98462 0.94967 1.00128 1.21381 0.95949 0.99704 0.97497 1.21260 1.00217 0.98502 0.94977 0.88565 0.89921 0.86540 0.86230 0.86996 0.75010 0.91867 0.93473 0.93747 0.91702 0.75428 0.94900 0.92460 0.93985 0.94556 0.94309 0.84736 0.84165 0.84374 0.84735 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 13.22 67.78 0.90 -3.40 16 2 C -0.15 -3.14 7.40 25.65 0.19 -2.95 16 3 C 0.00 0.06 1.99 -12.29 -0.02 0.04 16 4 H 0.07 1.65 7.33 -2.38 -0.02 1.63 16 5 C -0.12 -2.10 4.91 29.85 0.15 -1.95 16 6 C 0.51 13.47 7.24 87.66 0.63 14.10 16 7 O -0.56 -19.24 12.56 -3.02 -0.04 -19.28 16 8 N -0.71 -19.26 4.53 -427.55 -1.94 -21.20 16 9 C 0.16 5.98 0.67 5.36 0.00 5.99 16 10 C -0.09 -3.34 4.81 30.59 0.15 -3.19 16 11 C 0.09 2.88 6.83 71.98 0.49 3.37 16 12 O -0.59 -17.90 13.66 -148.98 -2.03 -19.93 16 13 C 0.17 7.75 6.69 86.44 0.58 8.32 16 14 N -0.63 -33.20 3.55 -715.46 -2.54 -35.74 16 15 C -0.24 -13.53 10.70 84.03 0.90 -12.63 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 17 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 18 N -0.95 -55.74 11.39 21.65 0.25 -55.50 16 19 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 C 0.13 5.68 7.55 86.49 0.65 6.34 16 24 C -0.08 -1.35 4.77 -19.86 -0.09 -1.44 16 25 C -0.12 -1.71 8.86 22.27 0.20 -1.51 16 26 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 27 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 28 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 29 C -0.13 -2.26 9.67 22.27 0.22 -2.05 16 30 H 0.10 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.08 2.22 7.83 -2.91 -0.02 2.20 16 32 H 0.12 2.12 8.00 -2.91 -0.02 2.10 16 33 H 0.12 1.48 7.58 -2.39 -0.02 1.46 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.41 8.54 8.71 -92.71 -0.81 7.74 16 36 H 0.06 2.57 7.09 -2.39 -0.02 2.55 16 37 H 0.05 2.20 8.02 -2.39 -0.02 2.18 16 38 H 0.04 1.41 7.53 -2.38 -0.02 1.39 16 39 H 0.06 1.63 7.63 -2.39 -0.02 1.61 16 40 H 0.40 7.33 9.12 -74.06 -0.68 6.65 16 41 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 2.87 6.55 -2.38 -0.02 2.85 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 45 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.13 1.50 7.60 -2.91 -0.02 1.48 16 47 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 48 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 49 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 50 H 0.12 1.98 7.95 -2.91 -0.02 1.95 16 Total: -1.00 -74.41 409.35 1.25 -73.15 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.54 Total: 28.70 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 6.07 Total: 1.61 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -4.23 Total: -112.44 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -2.07 Total: -39.21 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -74.41 1.25 -73.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734076075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.600 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds