Wall clock time and date at job start Wed Apr 1 2020 04:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47576 * 2 1 4 4 N 1.46492 * 109.47224 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99788 * 269.99871 * 4 3 2 6 6 O 1.21284 * 120.00147 * 180.02562 * 5 4 3 7 7 C 1.50701 * 120.00319 * 0.02562 * 5 4 3 8 8 S 1.80993 * 109.47446 * 179.97438 * 7 5 4 9 9 C 1.76196 * 100.00262 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99782 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00262 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99564 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99944 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47498 * 60.00250 * 13 11 9 15 15 H 1.48503 * 109.47130 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47163 * 300.00056 * 13 11 9 17 17 C 1.46500 * 120.00349 * 89.99988 * 4 3 2 18 18 H 1.08999 * 110.62400 * 356.89677 * 17 4 3 19 19 C 1.55137 * 110.70930 * 233.59776 * 17 4 3 20 20 C 1.54898 * 101.65481 * 205.96287 * 19 17 4 21 21 N 1.47845 * 104.79816 * 37.07312 * 20 19 17 22 22 C 1.46904 * 110.99907 * 213.63736 * 21 20 19 23 23 H 1.08999 * 109.47149 * 65.21454 * 22 21 20 24 24 C 1.52993 * 109.46958 * 305.21593 * 22 21 20 25 25 C 1.53004 * 109.46963 * 185.21407 * 22 21 20 26 26 O 1.42894 * 109.47000 * 65.00044 * 25 22 21 27 27 C 1.42903 * 113.99878 * 180.02562 * 26 25 22 28 28 C 1.47448 * 108.56254 * 335.90263 * 21 20 19 29 29 H 1.08996 * 109.47445 * 300.00366 * 1 2 3 30 30 H 1.09005 * 109.47046 * 59.99751 * 1 2 3 31 31 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47152 * 239.99910 * 2 1 3 33 33 H 1.09005 * 109.47046 * 120.00249 * 2 1 3 34 34 H 1.09001 * 109.46626 * 59.99600 * 3 2 1 35 35 H 1.08997 * 109.46980 * 300.00435 * 3 2 1 36 36 H 1.09000 * 109.46684 * 300.00095 * 7 5 4 37 37 H 1.08999 * 109.46944 * 59.99345 * 7 5 4 38 38 H 0.97007 * 119.99818 * 179.97438 * 12 11 9 39 39 H 1.09005 * 110.99150 * 324.05648 * 19 17 4 40 40 H 1.09005 * 110.99106 * 87.82999 * 19 17 4 41 41 H 1.09001 * 110.37649 * 278.23818 * 20 19 17 42 42 H 1.09000 * 110.37613 * 155.89901 * 20 19 17 43 43 H 1.09005 * 109.46833 * 305.94700 * 24 22 21 44 44 H 1.08994 * 109.47756 * 65.95022 * 24 22 21 45 45 H 1.09003 * 109.46890 * 185.95299 * 24 22 21 46 46 H 1.09001 * 109.47078 * 185.00334 * 25 22 21 47 47 H 1.09001 * 109.46755 * 304.99549 * 25 22 21 48 48 H 1.08996 * 109.47227 * 59.99664 * 27 26 25 49 49 H 1.09006 * 109.47052 * 179.97438 * 27 26 25 50 50 H 1.09002 * 109.46621 * 299.99817 * 27 26 25 51 51 H 1.08994 * 109.88908 * 120.39932 * 28 21 20 52 52 H 1.09003 * 109.88861 * 241.58433 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1793 1.4422 1.1663 6 8 5.3922 1.4426 1.1659 7 6 3.4264 1.4415 2.4718 8 16 4.6031 1.4406 3.8470 9 6 3.4836 1.4407 5.2076 10 1 2.4182 1.4407 5.0303 11 6 3.9709 1.4396 6.5073 12 7 5.2693 1.4390 6.7233 13 14 2.7840 1.4389 7.9497 14 1 1.9285 0.2267 7.8864 15 1 3.5506 1.4384 9.2216 16 1 1.9293 2.6517 7.8880 17 6 4.2370 1.4425 -1.2696 18 1 3.5465 1.3874 -2.1112 19 6 5.2571 0.2745 -1.3147 20 6 6.3154 0.8213 -2.3047 21 7 6.4010 2.2667 -2.0057 22 6 6.6738 3.0410 -3.2239 23 1 5.8287 2.9540 -3.9067 24 6 7.9342 2.4991 -3.9010 25 6 6.8840 4.5115 -2.8572 26 8 8.0606 4.6393 -2.0565 27 6 8.3490 5.9807 -1.6570 28 6 5.1349 2.6926 -1.3814 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 2.7995 2.3312 2.5300 37 1 2.8000 0.5513 2.5294 38 1 5.6098 1.4386 7.6317 39 1 5.6950 0.1003 -0.3318 40 1 4.7937 -0.6339 -1.6998 41 1 5.9897 0.6651 -3.3331 42 1 7.2788 0.3409 -2.1339 43 1 8.7554 2.4879 -3.1842 44 1 7.7486 1.4857 -4.2567 45 1 8.1968 3.1378 -4.7444 46 1 6.9981 5.1003 -3.7674 47 1 6.0218 4.8728 -2.2965 48 1 7.5173 6.3721 -1.0713 49 1 9.2561 5.9928 -1.0526 50 1 8.4934 6.6002 -2.5422 51 1 5.3293 3.0995 -0.3891 52 1 4.6488 3.4438 -2.0039 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753313315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:35 Heat of formation + Delta-G solvation = -71.726121 kcal Electronic energy + Delta-G solvation = -29403.779736 eV Core-core repulsion = 25530.004019 eV Total energy + Delta-G solvation = -3873.775717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.39262 -38.76865 -37.29232 -35.99265 -33.86245 -32.39889 -32.22662 -29.73466 -29.35327 -27.88305 -27.02488 -25.81369 -25.54991 -25.36388 -22.39139 -22.02653 -21.26307 -20.01855 -18.76818 -17.58438 -16.88449 -16.71067 -16.37823 -16.12664 -15.32108 -15.04212 -15.01904 -14.78263 -14.77096 -14.48190 -13.87839 -13.67513 -13.48718 -13.26430 -13.13152 -12.96111 -12.88403 -12.47899 -12.39329 -12.27729 -12.21886 -11.98575 -11.81981 -11.49522 -11.42370 -11.25987 -11.20633 -11.03891 -11.02828 -10.95032 -10.90843 -10.75940 -10.74261 -10.65192 -9.78261 -9.64613 -9.03954 -9.02870 -8.54416 -8.17306 -8.07603 -6.45284 -6.18190 -3.88160 2.93179 3.11924 3.24900 3.26784 3.30485 3.61207 3.74854 3.94626 4.23536 4.59482 4.64722 4.74467 4.80749 4.86645 4.93282 5.00803 5.07856 5.14271 5.16605 5.17978 5.24165 5.27238 5.28316 5.30760 5.36314 5.39163 5.48444 5.51846 5.59486 5.63727 5.66734 5.68078 5.73019 5.79683 5.87780 5.90975 5.92397 6.01199 6.02511 6.11653 6.15126 6.23861 6.28313 6.40381 6.88391 7.02468 7.06871 7.26063 7.61215 7.63194 8.37923 8.66327 9.26791 10.89044 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.003088 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.078164 B = 9065.449111 C =10900.520448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.111 3.889 4 N -0.614 5.614 5 C 0.531 3.469 6 O -0.495 6.495 7 C -0.151 4.151 8 S -0.058 6.058 9 C -0.536 4.536 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.917 3.083 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.133 3.867 18 H 0.086 0.914 19 C -0.147 4.147 20 C 0.052 3.948 21 N -0.502 5.502 22 C 0.077 3.923 23 H 0.048 0.952 24 C -0.140 4.140 25 C 0.070 3.930 26 O -0.367 6.367 27 C 0.031 3.969 28 C 0.037 3.963 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.039 0.961 49 H 0.085 0.915 50 H 0.034 0.966 51 H 0.094 0.906 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 2.805 -23.605 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.012 4.012 4 N -0.350 5.350 5 C 0.318 3.682 6 O -0.367 6.367 7 C -0.301 4.301 8 S 0.169 5.831 9 C -0.684 4.684 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.502 5.502 13 Si 0.743 3.257 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.200 1.200 17 C 0.028 3.972 18 H 0.104 0.896 19 C -0.186 4.186 20 C -0.076 4.076 21 N -0.227 5.227 22 C -0.031 4.031 23 H 0.066 0.934 24 C -0.198 4.198 25 C -0.007 4.007 26 O -0.285 6.285 27 C -0.066 4.066 28 C -0.091 4.091 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.104 0.896 50 H 0.052 0.948 51 H 0.112 0.888 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.696 2.763 -23.075 23.302 hybrid contribution -3.232 0.197 0.261 3.248 sum -4.928 2.960 -22.813 23.527 Atomic orbital electron populations 1.21698 0.95242 1.01929 1.01858 1.21987 0.96013 0.97378 1.02903 1.21639 0.79576 0.96889 1.03108 1.47934 1.06124 1.75756 1.05149 1.20287 0.88071 0.75502 0.84295 1.90724 1.13250 1.46207 1.86563 1.23603 1.04555 1.04472 0.97516 1.85414 1.07849 1.96666 0.93187 1.22823 0.94278 1.58982 0.92330 0.91119 1.24974 0.95617 0.94608 0.98315 1.70011 1.11690 1.46787 1.21718 0.86256 0.80244 0.78757 0.80427 1.19977 1.20828 1.19981 1.22174 0.93381 0.95900 0.85725 0.89625 1.23195 0.95947 0.96656 1.02783 1.22907 0.99755 0.88381 0.96510 1.63612 1.32581 1.02720 1.23758 1.21876 0.97780 0.92663 0.90820 0.93385 1.21751 0.97961 1.00017 1.00049 1.22576 0.88554 0.95737 0.93842 1.88023 1.43627 1.26260 1.70567 1.22726 1.01250 0.84016 0.98610 1.23195 0.88400 0.96051 1.01471 0.92309 0.92870 0.92529 0.91924 0.91166 0.89895 0.90921 0.89609 0.89484 0.92165 0.87458 0.91455 0.94240 0.90055 0.90574 0.92886 0.92643 0.93520 0.93442 0.94221 0.89611 0.94771 0.88805 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.14 -1.47 6.26 -26.73 -0.17 -1.63 16 3 C 0.11 1.20 5.19 -4.05 -0.02 1.18 16 4 N -0.61 -8.55 2.54 -164.05 -0.42 -8.96 16 5 C 0.53 9.91 6.80 -10.98 -0.07 9.83 16 6 O -0.49 -10.97 12.22 5.55 0.07 -10.90 16 7 C -0.15 -3.07 4.71 36.01 0.17 -2.90 16 8 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 9 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 10 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 11 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 12 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 13 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.13 1.66 3.43 -66.11 -0.23 1.43 16 18 H 0.09 0.85 7.89 -51.93 -0.41 0.44 16 19 C -0.15 -1.94 6.38 -24.60 -0.16 -2.10 16 20 C 0.05 0.63 5.44 -2.30 -0.01 0.61 16 21 N -0.50 -6.73 4.98 -223.30 -1.11 -7.84 16 22 C 0.08 0.83 2.02 -67.71 -0.14 0.70 16 23 H 0.05 0.45 8.11 -51.93 -0.42 0.03 16 24 C -0.14 -1.39 8.55 37.15 0.32 -1.07 16 25 C 0.07 0.77 5.46 37.16 0.20 0.97 16 26 O -0.37 -4.88 9.89 -35.23 -0.35 -5.23 16 27 C 0.03 0.32 11.01 101.05 1.11 1.43 16 28 C 0.04 0.51 5.36 -2.83 -0.02 0.49 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.86 7.22 -51.93 -0.37 0.49 16 34 H 0.08 0.94 6.44 -51.93 -0.33 0.60 16 35 H 0.07 0.62 7.97 -51.93 -0.41 0.21 16 36 H 0.09 1.64 7.40 -51.92 -0.38 1.25 16 37 H 0.09 1.67 7.18 -51.92 -0.37 1.29 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.11 1.86 5.69 -51.93 -0.30 1.56 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.39 7.35 -51.93 -0.38 0.01 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 0.91 7.76 -51.93 -0.40 0.51 16 44 H 0.05 0.47 7.00 -51.93 -0.36 0.11 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.53 6.66 -51.93 -0.35 0.18 16 48 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.09 1.66 6.40 -51.93 -0.33 1.32 16 52 H 0.05 0.53 6.66 -51.93 -0.35 0.19 16 LS Contribution 415.22 15.07 6.26 6.26 Total: -1.00 -34.03 415.22 -9.87 -43.90 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -9.37 Total: 0.58 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 1.56 Total: -4.93 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.79 Total: -42.36 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.28 Total: -16.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.03 -9.87 -43.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753313315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.827 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds