Wall clock time and date at job start Wed Apr 1 2020 04:08:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53000 * 109.47576 * 2 1
4 4 N 1.46492 * 109.47224 * 180.02562 * 3 2 1
5 5 C 1.34777 * 119.99788 * 269.99871 * 4 3 2
6 6 O 1.21284 * 120.00147 * 180.02562 * 5 4 3
7 7 C 1.50701 * 120.00319 * 0.02562 * 5 4 3
8 8 S 1.80993 * 109.47446 * 179.97438 * 7 5 4
9 9 C 1.76196 * 100.00262 * 179.97438 * 8 7 5
10 10 H 1.08006 * 119.99782 * 0.02562 * 9 8 7
11 11 C 1.38805 * 120.00262 * 179.97438 * 9 8 7
12 12 N 1.31625 * 119.99564 * 0.02562 * 11 9 8
13 13 Si 1.86793 * 119.99944 * 180.02562 * 11 9 8
14 14 H 1.48501 * 109.47498 * 60.00250 * 13 11 9
15 15 H 1.48503 * 109.47130 * 180.02562 * 13 11 9
16 16 H 1.48497 * 109.47163 * 300.00056 * 13 11 9
17 17 C 1.46500 * 120.00349 * 89.99988 * 4 3 2
18 18 H 1.08999 * 110.62400 * 356.89677 * 17 4 3
19 19 C 1.55137 * 110.70930 * 233.59776 * 17 4 3
20 20 C 1.54898 * 101.65481 * 205.96287 * 19 17 4
21 21 N 1.47845 * 104.79816 * 37.07312 * 20 19 17
22 22 C 1.46904 * 110.99907 * 213.63736 * 21 20 19
23 23 H 1.08999 * 109.47149 * 65.21454 * 22 21 20
24 24 C 1.52993 * 109.46958 * 305.21593 * 22 21 20
25 25 C 1.53004 * 109.46963 * 185.21407 * 22 21 20
26 26 O 1.42894 * 109.47000 * 65.00044 * 25 22 21
27 27 C 1.42903 * 113.99878 * 180.02562 * 26 25 22
28 28 C 1.47448 * 108.56254 * 335.90263 * 21 20 19
29 29 H 1.08996 * 109.47445 * 300.00366 * 1 2 3
30 30 H 1.09005 * 109.47046 * 59.99751 * 1 2 3
31 31 H 1.08997 * 109.47394 * 179.97438 * 1 2 3
32 32 H 1.09008 * 109.47152 * 239.99910 * 2 1 3
33 33 H 1.09005 * 109.47046 * 120.00249 * 2 1 3
34 34 H 1.09001 * 109.46626 * 59.99600 * 3 2 1
35 35 H 1.08997 * 109.46980 * 300.00435 * 3 2 1
36 36 H 1.09000 * 109.46684 * 300.00095 * 7 5 4
37 37 H 1.08999 * 109.46944 * 59.99345 * 7 5 4
38 38 H 0.97007 * 119.99818 * 179.97438 * 12 11 9
39 39 H 1.09005 * 110.99150 * 324.05648 * 19 17 4
40 40 H 1.09005 * 110.99106 * 87.82999 * 19 17 4
41 41 H 1.09001 * 110.37649 * 278.23818 * 20 19 17
42 42 H 1.09000 * 110.37613 * 155.89901 * 20 19 17
43 43 H 1.09005 * 109.46833 * 305.94700 * 24 22 21
44 44 H 1.08994 * 109.47756 * 65.95022 * 24 22 21
45 45 H 1.09003 * 109.46890 * 185.95299 * 24 22 21
46 46 H 1.09001 * 109.47078 * 185.00334 * 25 22 21
47 47 H 1.09001 * 109.46755 * 304.99549 * 25 22 21
48 48 H 1.08996 * 109.47227 * 59.99664 * 27 26 25
49 49 H 1.09006 * 109.47052 * 179.97438 * 27 26 25
50 50 H 1.09002 * 109.46621 * 299.99817 * 27 26 25
51 51 H 1.08994 * 109.88908 * 120.39932 * 28 21 20
52 52 H 1.09003 * 109.88861 * 241.58433 * 28 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 3.5050 1.4424 -0.0006
5 6 4.1793 1.4422 1.1663
6 8 5.3922 1.4426 1.1659
7 6 3.4264 1.4415 2.4718
8 16 4.6031 1.4406 3.8470
9 6 3.4836 1.4407 5.2076
10 1 2.4182 1.4407 5.0303
11 6 3.9709 1.4396 6.5073
12 7 5.2693 1.4390 6.7233
13 14 2.7840 1.4389 7.9497
14 1 1.9285 0.2267 7.8864
15 1 3.5506 1.4384 9.2216
16 1 1.9293 2.6517 7.8880
17 6 4.2370 1.4425 -1.2696
18 1 3.5465 1.3874 -2.1112
19 6 5.2571 0.2745 -1.3147
20 6 6.3154 0.8213 -2.3047
21 7 6.4010 2.2667 -2.0057
22 6 6.6738 3.0410 -3.2239
23 1 5.8287 2.9540 -3.9067
24 6 7.9342 2.4991 -3.9010
25 6 6.8840 4.5115 -2.8572
26 8 8.0606 4.6393 -2.0565
27 6 8.3490 5.9807 -1.6570
28 6 5.1349 2.6926 -1.3814
29 1 -0.3634 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6767 1.9563 0.8900
35 1 1.6767 1.9563 -0.8899
36 1 2.7995 2.3312 2.5300
37 1 2.8000 0.5513 2.5294
38 1 5.6098 1.4386 7.6317
39 1 5.6950 0.1003 -0.3318
40 1 4.7937 -0.6339 -1.6998
41 1 5.9897 0.6651 -3.3331
42 1 7.2788 0.3409 -2.1339
43 1 8.7554 2.4879 -3.1842
44 1 7.7486 1.4857 -4.2567
45 1 8.1968 3.1378 -4.7444
46 1 6.9981 5.1003 -3.7674
47 1 6.0218 4.8728 -2.2965
48 1 7.5173 6.3721 -1.0713
49 1 9.2561 5.9928 -1.0526
50 1 8.4934 6.6002 -2.5422
51 1 5.3293 3.0995 -0.3891
52 1 4.6488 3.4438 -2.0039
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753313315.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:08:34
Heat of formation + Delta-G solvation = -94.948155 kcal
Electronic energy + Delta-G solvation = -29404.786719 eV
Core-core repulsion = 25530.004019 eV
Total energy + Delta-G solvation = -3874.782700 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.192 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.56814 -39.82869 -38.29939 -37.15137 -34.75950 -34.58343 -33.19753 -31.15101
-30.31492 -28.97222 -27.91587 -27.63819 -26.71041 -26.38543 -23.42330 -22.97466
-22.19149 -20.93895 -20.31399 -19.31059 -18.01576 -17.83596 -17.43825 -17.10228
-16.88113 -16.42411 -16.20263 -16.08487 -15.84415 -15.64098 -15.34947 -14.81229
-14.53410 -14.42308 -14.29960 -14.19498 -13.88932 -13.78758 -13.59583 -13.18161
-13.10966 -13.01580 -12.91667 -12.86423 -12.68626 -12.62925 -12.47755 -12.35056
-12.10790 -12.07136 -11.97949 -11.88318 -11.73750 -11.58190 -11.53731 -11.12620
-10.52215 -10.50031 -10.24846 -9.67681 -9.03692 -8.65869 -8.34108 -6.12149
1.25992 1.42829 1.45429 1.55027 1.65684 2.09370 2.28052 2.90609
2.99509 3.06474 3.26394 3.62226 3.64978 3.81295 3.96328 4.00023
4.07960 4.10992 4.12751 4.27895 4.28148 4.33927 4.39811 4.45031
4.46826 4.48081 4.51770 4.54973 4.57397 4.58915 4.73873 4.76515
4.85473 4.89327 4.93803 4.95516 4.99811 5.02745 5.05973 5.20943
5.25657 5.29743 5.40581 5.44472 5.46239 5.78846 6.08534 6.19211
6.21043 6.36591 6.43213 7.06531 7.26108 8.74810
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.010414 B = 0.003088 C = 0.002568
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2688.078164 B = 9065.449111 C =10900.520448
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.139 4.139
3 C 0.104 3.896
4 N -0.599 5.599
5 C 0.530 3.470
6 O -0.538 6.538
7 C -0.123 4.123
8 S -0.149 6.149
9 C -0.547 4.547
10 H 0.080 0.920
11 C 0.014 3.986
12 N -0.911 5.911
13 Si 0.997 3.003
14 H -0.262 1.262
15 H -0.278 1.278
16 H -0.261 1.261
17 C 0.135 3.865
18 H 0.132 0.868
19 C -0.147 4.147
20 C 0.059 3.941
21 N -0.533 5.533
22 C 0.076 3.924
23 H 0.076 0.924
24 C -0.134 4.134
25 C 0.066 3.934
26 O -0.400 6.400
27 C 0.028 3.972
28 C 0.045 3.955
29 H 0.052 0.948
30 H 0.073 0.927
31 H 0.058 0.942
32 H 0.073 0.927
33 H 0.041 0.959
34 H 0.077 0.923
35 H 0.111 0.889
36 H 0.100 0.900
37 H 0.099 0.901
38 H 0.271 0.729
39 H 0.058 0.942
40 H 0.089 0.911
41 H 0.073 0.927
42 H 0.065 0.935
43 H 0.045 0.955
44 H 0.063 0.937
45 H 0.073 0.927
46 H 0.073 0.927
47 H 0.040 0.960
48 H 0.034 0.966
49 H 0.084 0.916
50 H 0.058 0.942
51 H 0.043 0.957
52 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.350 3.034 -26.343 27.517
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.178 4.178
3 C -0.018 4.018
4 N -0.333 5.333
5 C 0.317 3.683
6 O -0.415 6.415
7 C -0.274 4.274
8 S 0.078 5.922
9 C -0.695 4.695
10 H 0.098 0.902
11 C -0.191 4.191
12 N -0.547 5.547
13 Si 0.819 3.181
14 H -0.186 1.186
15 H -0.204 1.204
16 H -0.186 1.186
17 C 0.031 3.969
18 H 0.149 0.851
19 C -0.186 4.186
20 C -0.068 4.068
21 N -0.259 5.259
22 C -0.032 4.032
23 H 0.094 0.906
24 C -0.192 4.192
25 C -0.011 4.011
26 O -0.319 6.319
27 C -0.069 4.069
28 C -0.084 4.084
29 H 0.071 0.929
30 H 0.092 0.908
31 H 0.077 0.923
32 H 0.092 0.908
33 H 0.060 0.940
34 H 0.095 0.905
35 H 0.129 0.871
36 H 0.118 0.882
37 H 0.117 0.883
38 H 0.080 0.920
39 H 0.077 0.923
40 H 0.108 0.892
41 H 0.091 0.909
42 H 0.083 0.917
43 H 0.064 0.936
44 H 0.082 0.918
45 H 0.092 0.908
46 H 0.091 0.909
47 H 0.058 0.942
48 H 0.053 0.947
49 H 0.102 0.898
50 H 0.077 0.923
51 H 0.061 0.939
52 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -4.890 2.993 -25.859 26.487
hybrid contribution -2.235 0.138 0.983 2.446
sum -7.125 3.131 -24.876 26.065
Atomic orbital electron populations
1.21669 0.93613 1.02398 1.02623 1.21922 0.97316 0.96462 1.02058
1.21957 0.77195 0.97851 1.04751 1.47875 1.07554 1.73625 1.04207
1.20001 0.87403 0.75750 0.85136 1.90725 1.15045 1.48505 1.87193
1.23406 1.02673 1.05637 0.95691 1.85594 1.12453 1.96973 0.97141
1.23153 0.94559 1.58978 0.92778 0.90153 1.26124 0.97575 0.93736
1.01652 1.70186 1.14118 1.47932 1.22498 0.85024 0.77647 0.79527
0.75929 1.18621 1.20351 1.18598 1.22427 0.93811 0.94887 0.85757
0.85072 1.23098 0.96640 0.98114 1.00710 1.22841 0.98734 0.87478
0.97755 1.63442 1.32915 1.03721 1.25821 1.22010 0.98939 0.92078
0.90189 0.90603 1.21697 0.96618 1.01121 0.99734 1.22752 0.87498
0.96448 0.94432 1.87983 1.44734 1.27818 1.71333 1.22819 1.00998
0.83396 0.99654 1.22975 0.88993 0.96984 0.99424 0.92879 0.90768
0.92274 0.90839 0.94008 0.90504 0.87091 0.88198 0.88251 0.92020
0.92328 0.89207 0.90914 0.91650 0.93557 0.91790 0.90815 0.90901
0.94167 0.94711 0.89767 0.92345 0.93889 0.91132
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.01 9.91 71.98 0.71 -1.29 16
2 C -0.14 -2.47 6.26 30.59 0.19 -2.28 16
3 C 0.10 1.96 5.19 86.38 0.45 2.40 16
4 N -0.60 -15.94 2.54 -791.32 -2.01 -17.95 16
5 C 0.53 20.39 6.80 87.66 0.60 20.99 16
6 O -0.54 -25.48 12.22 -3.04 -0.04 -25.52 16
7 C -0.12 -5.13 4.71 71.24 0.34 -4.80 16
8 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16
9 C -0.55 -31.93 9.50 67.96 0.65 -31.29 16
10 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16
11 C 0.01 0.81 5.49 84.86 0.47 1.27 16
12 N -0.91 -57.09 13.22 21.65 0.29 -56.80 16
13 Si 1.00 44.27 29.55 68.60 2.03 46.29 16
14 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16
15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16
16 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16
17 C 0.14 3.06 3.43 46.17 0.16 3.22 16
18 H 0.13 1.88 7.89 -2.39 -0.02 1.86 16
19 C -0.15 -3.76 6.38 31.98 0.20 -3.56 16
20 C 0.06 1.35 5.44 86.77 0.47 1.82 16
21 N -0.53 -13.99 4.98 -860.37 -4.28 -18.27 16
22 C 0.08 1.48 2.02 44.91 0.09 1.57 16
23 H 0.08 1.08 8.11 -2.39 -0.02 1.06 16
24 C -0.13 -2.43 8.55 71.98 0.62 -1.81 16
25 C 0.07 1.34 5.46 71.98 0.39 1.73 16
26 O -0.40 -10.75 9.89 -148.98 -1.47 -12.23 16
27 C 0.03 0.58 11.01 113.37 1.25 1.83 16
28 C 0.05 1.19 5.36 86.64 0.46 1.65 16
29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16
31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
32 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16
33 H 0.04 0.98 7.22 -2.38 -0.02 0.96 16
34 H 0.08 1.57 6.44 -2.39 -0.02 1.55 16
35 H 0.11 1.32 7.97 -2.39 -0.02 1.31 16
36 H 0.10 3.84 7.40 -2.39 -0.02 3.83 16
37 H 0.10 3.86 7.18 -2.40 -0.02 3.85 16
38 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16
39 H 0.06 2.13 5.69 -2.38 -0.01 2.12 16
40 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16
41 H 0.07 1.17 7.35 -2.39 -0.02 1.16 16
42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
43 H 0.05 1.12 7.76 -2.38 -0.02 1.10 16
44 H 0.06 0.99 7.00 -2.39 -0.02 0.97 16
45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
46 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
47 H 0.04 0.86 6.66 -2.39 -0.02 0.84 16
48 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16
49 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16
50 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
51 H 0.04 1.58 6.40 -2.39 -0.02 1.57 16
52 H 0.07 1.46 6.66 -2.39 -0.02 1.44 16
Total: -1.00 -80.63 415.22 1.27 -79.36
By element:
Atomic # 1 Polarization: 22.46 SS G_CDS: 0.88 Total: 23.34 kcal
Atomic # 6 Polarization: -15.58 SS G_CDS: 7.04 Total: -8.54 kcal
Atomic # 7 Polarization: -87.02 SS G_CDS: -6.00 Total: -93.02 kcal
Atomic # 8 Polarization: -36.24 SS G_CDS: -1.51 Total: -37.75 kcal
Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal
Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal
Total: -80.63 1.27 -79.36 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753313315.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.584 kcal
(2) G-P(sol) polarization free energy of solvation -80.633 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.364 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds