Wall clock time and date at job start Wed Apr 1 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47363 * 2 1 4 4 H 1.08996 * 109.46932 * 55.00625 * 3 2 1 5 5 C 1.53007 * 109.46780 * 175.00070 * 3 2 1 6 6 N 1.46892 * 109.47116 * 294.47436 * 5 3 2 7 7 C 1.48532 * 111.00271 * 281.51077 * 6 5 3 8 8 C 1.54936 * 103.22714 * 200.28267 * 7 6 5 9 9 C 1.54592 * 102.92353 * 37.41298 * 8 7 6 10 10 H 1.08997 * 110.39319 * 97.00397 * 9 8 7 11 11 N 1.46505 * 110.31273 * 219.12844 * 9 8 7 12 12 C 1.46506 * 119.99929 * 235.71957 * 11 9 8 13 13 C 1.52992 * 109.47105 * 89.99809 * 12 11 9 14 14 C 1.34777 * 120.00013 * 55.71444 * 11 9 8 15 15 O 1.21279 * 119.99765 * 0.02562 * 14 11 9 16 16 C 1.50694 * 120.00205 * 180.02562 * 14 11 9 17 17 S 1.80997 * 109.47411 * 179.97438 * 16 14 11 18 18 C 1.76203 * 100.00321 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99580 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00089 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00141 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47538 * 59.99809 * 22 20 18 24 24 H 1.48499 * 109.46878 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47191 * 299.99448 * 22 20 18 26 26 C 1.47908 * 110.99981 * 164.11465 * 6 5 3 27 27 O 1.42893 * 109.47384 * 295.00067 * 3 2 1 28 28 C 1.42897 * 114.00058 * 153.22412 * 27 3 2 29 29 H 1.09000 * 109.46520 * 299.99958 * 1 2 3 30 30 H 1.09003 * 109.46907 * 59.99199 * 1 2 3 31 31 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46820 * 240.00371 * 2 1 3 33 33 H 1.08999 * 109.47388 * 120.00805 * 2 1 3 34 34 H 1.09003 * 109.46475 * 174.47578 * 5 3 2 35 35 H 1.08996 * 109.46988 * 54.48183 * 5 3 2 36 36 H 1.08995 * 110.66938 * 318.71240 * 7 6 5 37 37 H 1.08997 * 110.66367 * 81.68339 * 7 6 5 38 38 H 1.09004 * 110.72498 * 279.05928 * 8 7 6 39 39 H 1.09001 * 110.72921 * 155.77315 * 8 7 6 40 40 H 1.09004 * 109.46779 * 209.99621 * 12 11 9 41 41 H 1.08997 * 109.46957 * 329.99419 * 12 11 9 42 42 H 1.09004 * 109.47148 * 299.99585 * 13 12 11 43 43 H 1.08997 * 109.47531 * 59.99962 * 13 12 11 44 44 H 1.09001 * 109.47034 * 179.97438 * 13 12 11 45 45 H 1.09004 * 109.47314 * 300.00141 * 16 14 11 46 46 H 1.08999 * 109.46853 * 59.99747 * 16 14 11 47 47 H 0.96998 * 120.00283 * 180.02562 * 21 20 18 48 48 H 1.09006 * 109.91395 * 26.49470 * 26 6 5 49 49 H 1.09001 * 109.91793 * 265.20344 * 26 6 5 50 50 H 1.09005 * 109.47030 * 55.21874 * 28 27 3 51 51 H 1.08998 * 109.47371 * 175.21512 * 28 27 3 52 52 H 1.08999 * 109.47708 * 295.21388 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5650 1.4441 0.1257 6 7 3.9486 0.9078 1.4383 7 6 3.7761 1.9298 2.5021 8 6 4.6847 1.4096 3.6442 9 6 5.8983 0.8286 2.8831 10 1 6.7092 1.5562 2.8494 11 7 6.3533 -0.4094 3.5208 12 6 7.7449 -0.5383 3.9605 13 6 7.8707 -0.0499 5.4048 14 6 5.4918 -1.4297 3.7030 15 8 4.3399 -1.3230 3.3387 16 6 5.9596 -2.7029 4.3594 17 16 4.5812 -3.8716 4.4601 18 6 5.3870 -5.2284 5.2440 19 1 6.4328 -5.1581 5.5044 20 6 4.6780 -6.3879 5.5259 21 7 3.4036 -6.4737 5.2081 22 14 5.5322 -7.8260 6.3576 23 1 6.0545 -7.3946 7.6791 24 1 4.5633 -8.9355 6.5459 25 1 6.6580 -8.2915 5.5084 26 6 5.3808 0.5388 1.4621 27 8 1.6621 2.0814 -1.2210 28 6 1.5269 3.5001 -1.1169 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9364 2.4642 0.0273 35 1 3.9950 0.8235 -0.6603 36 1 4.1145 2.9064 2.1560 37 1 2.7362 1.9768 2.8254 38 1 4.1788 0.6310 4.2153 39 1 4.9931 2.2279 4.2949 40 1 8.0488 -1.5836 3.9026 41 1 8.3866 0.0628 3.3163 42 1 7.5668 0.9954 5.4627 43 1 7.2290 -0.6510 6.0489 44 1 8.9060 -0.1462 5.7321 45 1 6.7653 -3.1408 3.7701 46 1 6.3224 -2.4821 5.3632 47 1 2.9080 -7.2839 5.4054 48 1 5.9308 1.1388 0.7370 49 1 5.4951 -0.5209 1.2341 50 1 2.4516 3.9256 -0.7267 51 1 1.3218 3.9189 -2.1022 52 1 0.7044 3.7384 -0.4426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753451701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:40 Heat of formation + Delta-G solvation = -72.917643 kcal Electronic energy + Delta-G solvation = -29389.076051 eV Core-core repulsion = 25515.248665 eV Total energy + Delta-G solvation = -3873.827385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.30782 -38.86138 -37.46787 -35.54660 -33.69798 -32.39429 -31.89425 -30.08081 -29.37556 -28.40735 -27.25625 -26.22626 -25.41774 -23.37136 -23.23950 -21.69374 -21.53912 -20.34545 -18.67007 -17.53176 -17.00585 -16.67397 -16.45528 -15.71290 -15.44621 -15.02581 -14.80326 -14.77363 -14.45936 -14.17227 -13.87850 -13.78467 -13.62805 -13.32567 -13.25577 -13.07044 -12.76220 -12.62632 -12.46941 -12.25442 -11.95266 -11.82331 -11.67776 -11.56969 -11.35645 -11.27649 -11.19032 -11.12885 -11.02180 -11.00030 -10.84069 -10.74674 -10.72017 -10.42429 -9.77428 -9.71997 -9.02583 -9.02229 -8.44302 -8.28669 -8.16505 -6.44370 -6.17977 -3.87603 2.96746 3.18979 3.25101 3.27454 3.30735 3.52486 3.65434 4.12364 4.24104 4.58732 4.59812 4.77076 4.82649 4.92398 4.98912 5.05716 5.15173 5.15738 5.16636 5.18154 5.21347 5.23352 5.32407 5.39345 5.43518 5.44136 5.49109 5.56284 5.59823 5.61721 5.69408 5.79704 5.84642 5.85583 5.89304 5.95565 6.00395 6.04422 6.09053 6.24446 6.26062 6.28600 6.30556 6.61059 6.81207 6.94100 6.96332 7.19802 7.62091 7.66265 8.38249 8.72683 9.27178 10.89234 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.002962 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.158112 B = 9451.521818 C =11439.312675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.099 3.901 4 H 0.058 0.942 5 C 0.025 3.975 6 N -0.487 5.487 7 C 0.041 3.959 8 C -0.133 4.133 9 C 0.145 3.855 10 H 0.087 0.913 11 N -0.618 5.618 12 C 0.107 3.893 13 C -0.172 4.172 14 C 0.527 3.473 15 O -0.483 6.483 16 C -0.151 4.151 17 S -0.058 6.058 18 C -0.535 4.535 19 H 0.070 0.930 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.916 3.084 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.037 3.963 27 O -0.384 6.384 28 C 0.031 3.969 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.268 0.732 48 H 0.040 0.960 49 H 0.087 0.913 50 H 0.037 0.963 51 H 0.082 0.918 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 21.316 -7.686 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.041 3.959 4 H 0.076 0.924 5 C -0.104 4.104 6 N -0.212 5.212 7 C -0.087 4.087 8 C -0.172 4.172 9 C 0.040 3.960 10 H 0.105 0.895 11 N -0.355 5.355 12 C -0.016 4.016 13 C -0.230 4.230 14 C 0.314 3.686 15 O -0.355 6.355 16 C -0.301 4.301 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.088 0.912 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.743 3.257 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.091 4.091 27 O -0.302 6.302 28 C -0.066 4.066 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.078 0.922 48 H 0.058 0.942 49 H 0.105 0.895 50 H 0.055 0.945 51 H 0.100 0.900 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.526 20.790 -8.335 22.541 hybrid contribution 2.681 -0.046 1.038 2.876 sum 5.207 20.744 -7.297 22.598 Atomic orbital electron populations 1.21717 0.96031 1.01619 1.01205 1.21573 0.95654 0.93832 1.04062 1.22086 0.92837 0.94990 0.85987 0.92358 1.22787 0.97036 0.98032 0.92541 1.64611 1.18389 1.35514 1.02704 1.23183 1.00743 0.92476 0.92301 1.22880 0.95756 1.00892 0.97690 1.21744 0.96517 0.85794 0.91897 0.89482 1.48103 1.10635 1.14751 1.61970 1.21527 0.82279 1.02585 0.95233 1.22227 1.02055 1.01654 0.97076 1.20255 0.85662 0.83881 0.78828 1.90778 1.17070 1.80514 1.47115 1.23606 1.06424 0.97648 1.02462 1.85379 1.09990 1.08753 1.78995 1.22823 0.98834 1.01187 1.45510 0.91161 1.24969 0.94888 0.98125 0.95537 1.70006 1.07486 1.28097 1.44659 0.86264 0.79074 0.80716 0.79675 1.19995 1.20840 1.19987 1.23155 0.88012 1.02379 0.95599 1.87931 1.89461 1.19102 1.33750 1.22736 0.99556 0.82099 1.02195 0.93305 0.92861 0.92616 0.91809 0.88227 0.94977 0.90339 0.94576 0.90108 0.88329 0.91590 0.89973 0.90958 0.92658 0.91899 0.91786 0.89736 0.89651 0.92185 0.94160 0.89456 0.94457 0.89961 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.81 37.16 0.36 -1.44 16 2 C -0.11 -1.51 5.59 -26.73 -0.15 -1.66 16 3 C 0.10 1.17 2.27 -26.73 -0.06 1.11 16 4 H 0.06 0.68 7.20 -51.93 -0.37 0.30 16 5 C 0.02 0.29 4.43 -3.82 -0.02 0.27 16 6 N -0.49 -6.36 4.26 -230.46 -0.98 -7.34 16 7 C 0.04 0.47 6.10 -1.90 -0.01 0.46 16 8 C -0.13 -1.62 6.24 -24.87 -0.16 -1.78 16 9 C 0.15 1.69 3.46 -66.58 -0.23 1.46 16 10 H 0.09 0.79 7.86 -51.93 -0.41 0.38 16 11 N -0.62 -8.26 2.45 -164.57 -0.40 -8.66 16 12 C 0.11 1.11 5.90 -4.04 -0.02 1.09 16 13 C -0.17 -1.66 10.24 37.15 0.38 -1.28 16 14 C 0.53 9.52 6.59 -10.99 -0.07 9.45 16 15 O -0.48 -10.22 12.72 5.56 0.07 -10.15 16 16 C -0.15 -3.02 4.71 36.00 0.17 -2.85 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 22 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.04 0.47 5.47 -2.75 -0.02 0.46 16 27 O -0.38 -4.51 9.89 -35.23 -0.35 -4.86 16 28 C 0.03 0.26 10.79 101.05 1.09 1.35 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.62 7.82 -51.93 -0.41 0.22 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.57 7.64 -51.93 -0.40 1.17 16 34 H 0.03 0.34 7.03 -51.93 -0.36 -0.03 16 35 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 36 H 0.04 0.35 7.73 -51.93 -0.40 -0.05 16 37 H 0.08 0.95 7.82 -51.93 -0.41 0.55 16 38 H 0.10 1.57 6.04 -51.93 -0.31 1.26 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.90 6.44 -51.93 -0.33 0.56 16 41 H 0.07 0.58 7.96 -51.93 -0.41 0.16 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.74 7.22 -51.93 -0.37 0.36 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 1.60 7.40 -51.91 -0.38 1.22 16 46 H 0.09 1.62 7.18 -51.92 -0.37 1.24 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.04 0.43 7.77 -51.93 -0.40 0.03 16 49 H 0.09 1.35 7.24 -51.93 -0.38 0.97 16 50 H 0.04 0.28 7.46 -51.93 -0.39 -0.10 16 51 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 417.64 15.07 6.29 6.29 Total: -1.00 -33.00 417.64 -9.86 -42.86 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -9.46 Total: 0.92 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 1.47 Total: -6.26 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: -0.65 Total: -41.45 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.28 Total: -15.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.00 -9.86 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753451701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.059 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds