Wall clock time and date at job start Wed Apr 1 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47363 * 2 1 4 4 H 1.08996 * 109.46932 * 55.00625 * 3 2 1 5 5 C 1.53007 * 109.46780 * 175.00070 * 3 2 1 6 6 N 1.46892 * 109.47116 * 294.47436 * 5 3 2 7 7 C 1.48532 * 111.00271 * 281.51077 * 6 5 3 8 8 C 1.54936 * 103.22714 * 200.28267 * 7 6 5 9 9 C 1.54592 * 102.92353 * 37.41298 * 8 7 6 10 10 H 1.08997 * 110.39319 * 97.00397 * 9 8 7 11 11 N 1.46505 * 110.31273 * 219.12844 * 9 8 7 12 12 C 1.46506 * 119.99929 * 235.71957 * 11 9 8 13 13 C 1.52992 * 109.47105 * 89.99809 * 12 11 9 14 14 C 1.34777 * 120.00013 * 55.71444 * 11 9 8 15 15 O 1.21279 * 119.99765 * 0.02562 * 14 11 9 16 16 C 1.50694 * 120.00205 * 180.02562 * 14 11 9 17 17 S 1.80997 * 109.47411 * 179.97438 * 16 14 11 18 18 C 1.76203 * 100.00321 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99580 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00089 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00141 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47538 * 59.99809 * 22 20 18 24 24 H 1.48499 * 109.46878 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47191 * 299.99448 * 22 20 18 26 26 C 1.47908 * 110.99981 * 164.11465 * 6 5 3 27 27 O 1.42893 * 109.47384 * 295.00067 * 3 2 1 28 28 C 1.42897 * 114.00058 * 153.22412 * 27 3 2 29 29 H 1.09000 * 109.46520 * 299.99958 * 1 2 3 30 30 H 1.09003 * 109.46907 * 59.99199 * 1 2 3 31 31 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46820 * 240.00371 * 2 1 3 33 33 H 1.08999 * 109.47388 * 120.00805 * 2 1 3 34 34 H 1.09003 * 109.46475 * 174.47578 * 5 3 2 35 35 H 1.08996 * 109.46988 * 54.48183 * 5 3 2 36 36 H 1.08995 * 110.66938 * 318.71240 * 7 6 5 37 37 H 1.08997 * 110.66367 * 81.68339 * 7 6 5 38 38 H 1.09004 * 110.72498 * 279.05928 * 8 7 6 39 39 H 1.09001 * 110.72921 * 155.77315 * 8 7 6 40 40 H 1.09004 * 109.46779 * 209.99621 * 12 11 9 41 41 H 1.08997 * 109.46957 * 329.99419 * 12 11 9 42 42 H 1.09004 * 109.47148 * 299.99585 * 13 12 11 43 43 H 1.08997 * 109.47531 * 59.99962 * 13 12 11 44 44 H 1.09001 * 109.47034 * 179.97438 * 13 12 11 45 45 H 1.09004 * 109.47314 * 300.00141 * 16 14 11 46 46 H 1.08999 * 109.46853 * 59.99747 * 16 14 11 47 47 H 0.96998 * 120.00283 * 180.02562 * 21 20 18 48 48 H 1.09006 * 109.91395 * 26.49470 * 26 6 5 49 49 H 1.09001 * 109.91793 * 265.20344 * 26 6 5 50 50 H 1.09005 * 109.47030 * 55.21874 * 28 27 3 51 51 H 1.08998 * 109.47371 * 175.21512 * 28 27 3 52 52 H 1.08999 * 109.47708 * 295.21388 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5650 1.4441 0.1257 6 7 3.9486 0.9078 1.4383 7 6 3.7761 1.9298 2.5021 8 6 4.6847 1.4096 3.6442 9 6 5.8983 0.8286 2.8831 10 1 6.7092 1.5562 2.8494 11 7 6.3533 -0.4094 3.5208 12 6 7.7449 -0.5383 3.9605 13 6 7.8707 -0.0499 5.4048 14 6 5.4918 -1.4297 3.7030 15 8 4.3399 -1.3230 3.3387 16 6 5.9596 -2.7029 4.3594 17 16 4.5812 -3.8716 4.4601 18 6 5.3870 -5.2284 5.2440 19 1 6.4328 -5.1581 5.5044 20 6 4.6780 -6.3879 5.5259 21 7 3.4036 -6.4737 5.2081 22 14 5.5322 -7.8260 6.3576 23 1 6.0545 -7.3946 7.6791 24 1 4.5633 -8.9355 6.5459 25 1 6.6580 -8.2915 5.5084 26 6 5.3808 0.5388 1.4621 27 8 1.6621 2.0814 -1.2210 28 6 1.5269 3.5001 -1.1169 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9364 2.4642 0.0273 35 1 3.9950 0.8235 -0.6603 36 1 4.1145 2.9064 2.1560 37 1 2.7362 1.9768 2.8254 38 1 4.1788 0.6310 4.2153 39 1 4.9931 2.2279 4.2949 40 1 8.0488 -1.5836 3.9026 41 1 8.3866 0.0628 3.3163 42 1 7.5668 0.9954 5.4627 43 1 7.2290 -0.6510 6.0489 44 1 8.9060 -0.1462 5.7321 45 1 6.7653 -3.1408 3.7701 46 1 6.3224 -2.4821 5.3632 47 1 2.9080 -7.2839 5.4054 48 1 5.9308 1.1388 0.7370 49 1 5.4951 -0.5209 1.2341 50 1 2.4516 3.9256 -0.7267 51 1 1.3218 3.9189 -2.1022 52 1 0.7044 3.7384 -0.4426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753451701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:37 Heat of formation + Delta-G solvation = -94.169802 kcal Electronic energy + Delta-G solvation = -29389.997613 eV Core-core repulsion = 25515.248665 eV Total energy + Delta-G solvation = -3874.748948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44096 -39.86503 -38.50815 -36.71062 -34.66412 -34.57052 -32.89690 -31.08337 -30.73870 -29.40283 -28.23247 -27.61962 -27.02462 -24.32492 -24.23642 -22.66324 -22.59670 -21.30045 -20.24161 -19.18876 -17.92174 -17.86873 -17.59949 -16.86959 -16.69502 -16.47116 -16.27236 -15.94400 -15.63839 -15.27306 -15.04483 -14.71018 -14.69225 -14.58696 -14.42417 -14.23418 -14.20480 -13.78753 -13.46641 -13.17424 -13.14489 -13.07770 -12.87419 -12.74339 -12.60737 -12.60087 -12.56923 -12.31908 -12.17784 -12.11901 -12.07069 -11.80414 -11.76285 -11.68210 -11.40213 -11.11598 -10.58046 -10.44649 -10.21646 -9.56718 -9.18396 -8.62573 -8.32867 -6.09832 1.28399 1.43106 1.47188 1.57192 1.77675 2.17386 2.30236 2.67302 3.00639 3.24203 3.30476 3.65377 3.65904 3.79304 3.89681 4.00189 4.09439 4.16738 4.22780 4.25665 4.32911 4.37929 4.41657 4.44275 4.46150 4.52578 4.53720 4.58293 4.62256 4.63107 4.65855 4.78213 4.84273 4.91316 4.93694 4.97657 5.00319 5.02685 5.03916 5.19580 5.23556 5.28339 5.39048 5.41958 5.49201 5.81319 6.00829 6.08966 6.20482 6.34422 6.44839 7.08035 7.37267 8.75870 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.002962 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.158112 B = 9451.521818 C =11439.312675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.107 3.893 4 H 0.061 0.939 5 C 0.033 3.967 6 N -0.517 5.517 7 C 0.046 3.954 8 C -0.131 4.131 9 C 0.145 3.855 10 H 0.132 0.868 11 N -0.604 5.604 12 C 0.100 3.900 13 C -0.166 4.166 14 C 0.526 3.474 15 O -0.522 6.522 16 C -0.124 4.124 17 S -0.146 6.146 18 C -0.546 4.546 19 H 0.079 0.921 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.996 3.004 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.040 3.960 27 O -0.401 6.401 28 C 0.025 3.975 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.270 0.730 48 H 0.066 0.934 49 H 0.050 0.950 50 H 0.048 0.952 51 H 0.098 0.902 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 23.619 -7.598 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C 0.049 3.951 4 H 0.079 0.921 5 C -0.096 4.096 6 N -0.242 5.242 7 C -0.082 4.082 8 C -0.170 4.170 9 C 0.041 3.959 10 H 0.150 0.850 11 N -0.339 5.339 12 C -0.022 4.022 13 C -0.225 4.225 14 C 0.312 3.688 15 O -0.397 6.397 16 C -0.275 4.275 17 S 0.082 5.918 18 C -0.694 4.694 19 H 0.097 0.903 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.817 3.183 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.088 4.088 27 O -0.320 6.320 28 C -0.072 4.072 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.116 0.884 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.338 23.136 -8.248 25.136 hybrid contribution 1.848 -0.634 0.962 2.177 sum 7.186 22.502 -7.287 24.720 Atomic orbital electron populations 1.21672 0.95173 1.01509 1.01712 1.21463 0.96434 0.95084 1.02019 1.21903 0.93139 0.93778 0.86316 0.92108 1.22688 0.96607 0.98687 0.91605 1.64498 1.19054 1.36988 1.03679 1.23159 1.00203 0.93263 0.91534 1.22810 0.95811 1.00455 0.97912 1.22038 0.97690 0.85335 0.90815 0.85048 1.48045 1.11181 1.14014 1.60656 1.21838 0.80655 1.03183 0.96565 1.22178 1.02846 1.01671 0.95770 1.19932 0.85717 0.84320 0.78791 1.90775 1.18837 1.81189 1.48932 1.23421 1.03294 0.97043 1.03747 1.85536 1.15365 1.11559 1.79390 1.23155 0.99206 1.01596 1.45477 0.90306 1.26098 0.95561 1.01372 0.96052 1.70179 1.09386 1.29070 1.46071 0.85048 0.77980 0.76425 0.78824 1.18655 1.20372 1.18700 1.23066 0.88251 1.00607 0.96907 1.87899 1.89569 1.21089 1.33417 1.22948 1.00435 0.80255 1.03514 0.92946 0.92036 0.93098 0.92720 0.91363 0.92980 0.91498 0.91644 0.91225 0.92745 0.88824 0.90707 0.87154 0.91537 0.94666 0.89593 0.88529 0.88506 0.92058 0.91572 0.93183 0.93316 0.88383 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.81 71.98 0.71 -2.92 16 2 C -0.11 -3.17 5.59 30.59 0.17 -3.00 16 3 C 0.11 2.51 2.27 30.60 0.07 2.58 16 4 H 0.06 1.39 7.20 -2.39 -0.02 1.37 16 5 C 0.03 0.74 4.43 86.31 0.38 1.12 16 6 N -0.52 -13.37 4.26 -883.03 -3.76 -17.13 16 7 C 0.05 0.99 6.10 86.65 0.53 1.52 16 8 C -0.13 -3.00 6.24 31.80 0.20 -2.80 16 9 C 0.14 3.01 3.46 45.87 0.16 3.17 16 10 H 0.13 1.66 7.86 -2.39 -0.02 1.64 16 11 N -0.60 -15.29 2.45 -792.98 -1.94 -17.23 16 12 C 0.10 1.77 5.90 86.38 0.51 2.28 16 13 C -0.17 -2.73 10.24 71.98 0.74 -2.00 16 14 C 0.53 19.46 6.59 87.66 0.58 20.04 16 15 O -0.52 -23.37 12.72 -3.03 -0.04 -23.41 16 16 C -0.12 -5.07 4.71 71.23 0.34 -4.74 16 17 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 18 C -0.55 -31.73 9.50 67.95 0.65 -31.08 16 19 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -56.75 13.22 21.65 0.29 -56.47 16 22 Si 1.00 44.19 29.55 68.60 2.03 46.21 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 26 C 0.04 0.97 5.47 86.44 0.47 1.45 16 27 O -0.40 -9.02 9.89 -148.98 -1.47 -10.49 16 28 C 0.02 0.36 10.79 113.37 1.22 1.59 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.44 7.82 -2.39 -0.02 1.42 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 2.36 7.64 -2.39 -0.02 2.34 16 34 H 0.05 0.95 7.03 -2.39 -0.02 0.93 16 35 H 0.07 1.64 8.00 -2.39 -0.02 1.62 16 36 H 0.07 1.03 7.73 -2.39 -0.02 1.01 16 37 H 0.07 1.63 7.82 -2.39 -0.02 1.61 16 38 H 0.05 1.78 6.04 -2.39 -0.01 1.76 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 1.46 6.44 -2.38 -0.02 1.45 16 41 H 0.11 1.21 7.96 -2.39 -0.02 1.19 16 42 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.03 0.77 7.22 -2.39 -0.02 0.76 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.10 3.68 7.40 -2.39 -0.02 3.66 16 46 H 0.10 3.71 7.18 -2.40 -0.02 3.69 16 47 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 48 H 0.07 1.22 7.77 -2.38 -0.02 1.21 16 49 H 0.05 1.58 7.24 -2.39 -0.02 1.56 16 50 H 0.05 0.61 7.46 -2.38 -0.02 0.59 16 51 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.07 417.64 1.99 -75.08 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.87 Total: 24.36 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 7.18 Total: -11.53 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -5.42 Total: -90.82 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.51 Total: -33.90 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -77.07 1.99 -75.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753451701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.095 kcal (2) G-P(sol) polarization free energy of solvation -77.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds