Wall clock time and date at job start Wed Apr 1 2020 02:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47269 * 2 1 4 4 H 1.09005 * 109.52214 * 54.92281 * 3 2 1 5 5 C 1.53196 * 109.50133 * 294.84322 * 3 2 1 6 6 N 1.46928 * 108.77360 * 294.68597 * 5 3 2 7 7 C 1.34770 * 120.63115 * 126.36863 * 6 5 3 8 8 O 1.21280 * 120.00340 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00083 * 179.97438 * 7 6 5 10 10 S 1.80991 * 109.47180 * 179.97438 * 9 7 6 11 11 C 1.76202 * 100.00058 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99458 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00377 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99907 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00239 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47410 * 89.99587 * 15 13 11 17 17 H 1.48501 * 109.47000 * 210.00048 * 15 13 11 18 18 H 1.48499 * 109.47002 * 329.99472 * 15 13 11 19 19 C 1.46931 * 118.73683 * 306.38690 * 6 5 3 20 20 C 1.53188 * 108.77436 * 53.60845 * 19 6 5 21 21 C 1.53038 * 109.31798 * 305.36758 * 20 19 6 22 22 H 1.09000 * 109.44451 * 301.34998 * 21 20 19 23 23 N 1.46903 * 109.46138 * 181.38368 * 21 20 19 24 24 C 1.46899 * 110.99591 * 84.93246 * 23 21 20 25 25 C 1.53003 * 109.46920 * 179.97438 * 24 23 21 26 26 C 1.52996 * 109.47148 * 179.97438 * 25 24 23 27 27 O 1.42901 * 109.47127 * 180.02562 * 26 25 24 28 28 C 1.42903 * 114.00267 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47410 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46711 * 299.99456 * 1 2 3 31 31 H 1.08997 * 109.47767 * 59.99448 * 1 2 3 32 32 H 1.09009 * 109.46711 * 240.00543 * 2 1 3 33 33 H 1.08995 * 109.47250 * 120.00523 * 2 1 3 34 34 H 1.09003 * 109.58364 * 54.46843 * 5 3 2 35 35 H 1.08994 * 109.58880 * 174.89248 * 5 3 2 36 36 H 1.09005 * 109.46776 * 300.00433 * 9 7 6 37 37 H 1.09005 * 109.46541 * 60.00087 * 9 7 6 38 38 H 0.96994 * 120.00489 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.58533 * 173.40121 * 19 6 5 40 40 H 1.09003 * 109.58520 * 293.68372 * 19 6 5 41 41 H 1.09003 * 109.49932 * 185.41263 * 20 19 6 42 42 H 1.09002 * 109.49718 * 65.32064 * 20 19 6 43 43 H 1.00894 * 111.00141 * 320.97615 * 23 21 20 44 44 H 1.09000 * 109.47826 * 60.00201 * 24 23 21 45 45 H 1.08999 * 109.47449 * 299.99480 * 24 23 21 46 46 H 1.09004 * 109.47145 * 60.00082 * 25 24 23 47 47 H 1.09003 * 109.47206 * 300.00077 * 25 24 23 48 48 H 1.09001 * 109.46983 * 60.00634 * 26 25 24 49 49 H 1.08999 * 109.47591 * 299.99810 * 26 25 24 50 50 H 1.09002 * 109.47382 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.46938 * 59.99878 * 28 27 26 52 52 H 1.09004 * 109.46926 * 299.99999 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8408 5 6 1.6385 2.1269 -1.3104 6 7 2.3366 1.4666 -2.4220 7 6 1.6489 0.9911 -3.4791 8 8 0.4422 1.1059 -3.5189 9 6 2.3795 0.3168 -4.6117 10 16 1.1890 -0.2081 -5.8698 11 6 2.2835 -0.9417 -7.0397 12 1 3.3461 -0.9601 -6.8472 13 6 1.7802 -1.4960 -8.2084 14 7 0.4851 -1.4740 -8.4427 15 14 2.9405 -2.2744 -9.4482 16 1 3.1093 -3.7153 -9.1314 17 1 2.3748 -2.1306 -10.8137 18 1 4.2599 -1.5958 -9.3851 19 6 3.7985 1.3341 -2.3589 20 6 4.1758 0.6588 -1.0367 21 6 3.5652 1.4450 0.1256 22 1 3.9300 2.4718 0.1005 23 7 3.9526 0.8190 1.3969 24 6 5.2670 1.3009 1.8419 25 6 5.6351 0.6286 3.1661 26 6 7.0043 1.1300 3.6293 27 8 7.3484 0.5016 4.8658 28 6 8.6162 0.9032 5.3889 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.5612 2.0404 -1.4526 35 1 1.9211 3.1789 -1.2748 36 1 3.0904 1.0157 -5.0526 37 1 2.9139 -0.5540 -4.2319 38 1 0.1334 -1.8609 -9.2596 39 1 4.1465 0.7247 -3.1930 40 1 4.2575 2.3215 -2.4113 41 1 5.2608 0.6411 -0.9338 42 1 3.7924 -0.3615 -1.0270 43 1 3.9426 -0.1872 1.3224 44 1 5.2299 2.3813 1.9814 45 1 6.0172 1.0572 1.0896 46 1 5.6722 -0.4519 3.0271 47 1 4.8849 0.8726 3.9184 48 1 6.9676 2.2105 3.7684 49 1 7.7544 0.8856 2.8771 50 1 8.8032 0.3824 6.3281 51 1 8.6124 1.9789 5.5649 52 1 9.3997 0.6549 4.6730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754478940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:15 Heat of formation + Delta-G solvation = -94.992440 kcal Electronic energy + Delta-G solvation = -28364.858251 eV Core-core repulsion = 24490.073630 eV Total energy + Delta-G solvation = -3874.784621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44458 -38.57289 -38.07762 -35.88044 -34.18894 -32.75243 -32.43388 -30.31962 -30.16764 -28.47899 -27.13004 -25.55706 -25.12118 -24.00943 -23.45427 -22.47660 -21.81300 -20.10449 -18.38002 -17.73117 -16.94659 -16.78532 -16.69528 -15.86859 -15.67499 -15.57756 -15.39994 -15.06057 -14.81160 -14.72025 -14.54440 -14.15292 -13.93545 -13.41066 -13.16949 -13.04450 -12.85716 -12.67365 -12.52713 -12.32537 -12.22751 -12.09322 -11.85756 -11.76184 -11.55157 -11.51500 -11.45547 -11.23598 -11.07253 -11.02609 -10.76807 -10.69592 -10.54285 -10.26475 -10.13711 -9.80731 -9.32439 -9.07312 -8.71736 -8.46366 -8.22262 -6.50126 -6.22145 -3.92568 2.95478 3.06889 3.18164 3.21320 3.25590 3.29458 3.60556 3.92204 4.19579 4.44126 4.49783 4.54409 4.67849 4.76708 4.82692 4.85848 4.87740 4.91774 4.95791 5.00854 5.04243 5.07677 5.12946 5.18710 5.21773 5.29205 5.31149 5.43403 5.48948 5.51709 5.61464 5.64809 5.69256 5.73648 5.75626 5.81899 5.83931 5.87746 5.97587 6.08915 6.10931 6.15892 6.33189 6.47414 6.65933 6.69403 6.74389 7.04063 7.57947 7.59879 8.34365 8.59513 9.23086 10.85243 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.002059 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.122701 B =13596.868566 C =14900.401155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.087 4.087 4 H 0.086 0.914 5 C 0.113 3.887 6 N -0.616 5.616 7 C 0.536 3.464 8 O -0.515 6.515 9 C -0.151 4.151 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.113 3.887 20 C -0.167 4.167 21 C 0.095 3.905 22 H 0.078 0.922 23 N -0.682 5.682 24 C 0.062 3.938 25 C -0.118 4.118 26 C 0.062 3.938 27 O -0.393 6.393 28 C 0.032 3.968 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.343 0.657 44 H 0.073 0.927 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.050 0.950 49 H 0.048 0.952 50 H 0.086 0.914 51 H 0.041 0.959 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.908 7.081 24.937 29.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.107 4.107 4 H 0.104 0.896 5 C -0.010 4.010 6 N -0.353 5.353 7 C 0.323 3.677 8 O -0.389 6.389 9 C -0.301 4.301 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.011 4.011 20 C -0.207 4.207 21 C -0.015 4.015 22 H 0.096 0.904 23 N -0.312 5.312 24 C -0.068 4.068 25 C -0.156 4.156 26 C -0.015 4.015 27 O -0.312 6.312 28 C -0.065 4.065 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.162 0.838 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.104 0.896 51 H 0.060 0.940 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.488 7.527 25.231 28.727 hybrid contribution 3.195 -0.916 -1.488 3.641 sum 14.683 6.611 23.744 28.689 Atomic orbital electron populations 1.21821 0.95715 1.01741 1.01940 1.21494 0.96196 0.95793 1.01644 1.21532 0.94146 0.97619 0.97411 0.89594 1.21666 0.99520 0.95045 0.84776 1.48049 1.06893 1.60002 1.20325 1.20280 0.87630 0.77504 0.82241 1.90685 1.13951 1.56031 1.78274 1.23555 1.04764 1.02456 0.99361 1.85401 1.08592 1.74501 1.14811 1.22857 0.94978 1.43996 1.06544 0.91024 1.24982 0.95580 0.95564 0.97413 1.70014 1.11524 1.42734 1.25951 0.86183 0.80230 0.79410 0.79767 1.20281 1.20733 1.19729 1.21591 0.80704 1.00816 0.98000 1.22698 1.00742 1.01220 0.96055 1.21556 0.95417 0.97994 0.86506 0.90391 1.60562 1.28144 1.12068 1.30389 1.21848 0.89936 1.00025 0.94953 1.21466 0.95589 1.01087 0.97413 1.22482 0.96750 0.96496 0.85747 1.87878 1.36875 1.67811 1.38613 1.22748 0.85048 0.99573 0.99138 0.93031 0.93160 0.91732 0.91973 0.91874 0.88286 0.92114 0.89439 0.89481 0.92184 0.89274 0.91619 0.91183 0.90586 0.83791 0.90880 0.95023 0.91196 0.90130 0.93209 0.93399 0.89564 0.94042 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.68 37.16 0.36 -1.49 16 2 C -0.11 -1.24 4.67 -26.73 -0.12 -1.36 16 3 C -0.09 -0.84 2.38 -90.50 -0.22 -1.06 16 4 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 5 C 0.11 1.34 5.70 -3.71 -0.02 1.32 16 6 N -0.62 -8.40 2.33 -172.76 -0.40 -8.81 16 7 C 0.54 9.99 7.72 -10.98 -0.08 9.90 16 8 O -0.52 -11.53 15.27 5.56 0.08 -11.45 16 9 C -0.15 -3.04 4.50 36.01 0.16 -2.88 16 10 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 11 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 15 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 20 C -0.17 -1.42 4.99 -26.61 -0.13 -1.55 16 21 C 0.10 0.77 2.13 -67.67 -0.14 0.63 16 22 H 0.08 0.62 7.80 -51.93 -0.40 0.22 16 23 N -0.68 -5.07 5.80 -106.68 -0.62 -5.68 16 24 C 0.06 0.39 5.48 -3.82 -0.02 0.37 16 25 C -0.12 -0.78 5.84 -26.73 -0.16 -0.94 16 26 C 0.06 0.41 5.94 37.16 0.22 0.63 16 27 O -0.39 -3.30 10.70 -35.23 -0.38 -3.68 16 28 C 0.03 0.17 11.01 101.05 1.11 1.28 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.06 0.92 6.46 -51.93 -0.34 0.58 16 32 H 0.06 0.80 6.13 -51.92 -0.32 0.48 16 33 H 0.06 0.62 7.00 -51.93 -0.36 0.26 16 34 H 0.10 1.39 5.21 -51.93 -0.27 1.12 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.64 7.94 -51.91 -0.41 1.23 16 37 H 0.09 1.63 7.69 -51.91 -0.40 1.23 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.51 7.42 -51.93 -0.39 0.12 16 42 H 0.08 0.73 6.45 -51.93 -0.33 0.40 16 43 H 0.34 2.55 7.63 -39.29 -0.30 2.25 16 44 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 45 H 0.03 0.19 7.41 -51.93 -0.38 -0.19 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 52 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 415.10 15.07 6.26 6.26 Total: -1.00 -33.56 415.10 -9.68 -43.25 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -9.25 Total: -0.12 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 1.13 Total: -6.89 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.29 Total: -39.86 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.29 Total: -15.12 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.56 -9.68 -43.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754478940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.746 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds