Wall clock time and date at job start Wed Apr 1 2020 02:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47269 * 2 1 4 4 H 1.09005 * 109.52214 * 54.92281 * 3 2 1 5 5 C 1.53196 * 109.50133 * 294.84322 * 3 2 1 6 6 N 1.46928 * 108.77360 * 294.68597 * 5 3 2 7 7 C 1.34770 * 120.63115 * 126.36863 * 6 5 3 8 8 O 1.21280 * 120.00340 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00083 * 179.97438 * 7 6 5 10 10 S 1.80991 * 109.47180 * 179.97438 * 9 7 6 11 11 C 1.76202 * 100.00058 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99458 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00377 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99907 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00239 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47410 * 89.99587 * 15 13 11 17 17 H 1.48501 * 109.47000 * 210.00048 * 15 13 11 18 18 H 1.48499 * 109.47002 * 329.99472 * 15 13 11 19 19 C 1.46931 * 118.73683 * 306.38690 * 6 5 3 20 20 C 1.53188 * 108.77436 * 53.60845 * 19 6 5 21 21 C 1.53038 * 109.31798 * 305.36758 * 20 19 6 22 22 H 1.09000 * 109.44451 * 301.34998 * 21 20 19 23 23 N 1.46903 * 109.46138 * 181.38368 * 21 20 19 24 24 C 1.46899 * 110.99591 * 84.93246 * 23 21 20 25 25 C 1.53003 * 109.46920 * 179.97438 * 24 23 21 26 26 C 1.52996 * 109.47148 * 179.97438 * 25 24 23 27 27 O 1.42901 * 109.47127 * 180.02562 * 26 25 24 28 28 C 1.42903 * 114.00267 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47410 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46711 * 299.99456 * 1 2 3 31 31 H 1.08997 * 109.47767 * 59.99448 * 1 2 3 32 32 H 1.09009 * 109.46711 * 240.00543 * 2 1 3 33 33 H 1.08995 * 109.47250 * 120.00523 * 2 1 3 34 34 H 1.09003 * 109.58364 * 54.46843 * 5 3 2 35 35 H 1.08994 * 109.58880 * 174.89248 * 5 3 2 36 36 H 1.09005 * 109.46776 * 300.00433 * 9 7 6 37 37 H 1.09005 * 109.46541 * 60.00087 * 9 7 6 38 38 H 0.96994 * 120.00489 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.58533 * 173.40121 * 19 6 5 40 40 H 1.09003 * 109.58520 * 293.68372 * 19 6 5 41 41 H 1.09003 * 109.49932 * 185.41263 * 20 19 6 42 42 H 1.09002 * 109.49718 * 65.32064 * 20 19 6 43 43 H 1.00894 * 111.00141 * 320.97615 * 23 21 20 44 44 H 1.09000 * 109.47826 * 60.00201 * 24 23 21 45 45 H 1.08999 * 109.47449 * 299.99480 * 24 23 21 46 46 H 1.09004 * 109.47145 * 60.00082 * 25 24 23 47 47 H 1.09003 * 109.47206 * 300.00077 * 25 24 23 48 48 H 1.09001 * 109.46983 * 60.00634 * 26 25 24 49 49 H 1.08999 * 109.47591 * 299.99810 * 26 25 24 50 50 H 1.09002 * 109.47382 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.46938 * 59.99878 * 28 27 26 52 52 H 1.09004 * 109.46926 * 299.99999 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8408 5 6 1.6385 2.1269 -1.3104 6 7 2.3366 1.4666 -2.4220 7 6 1.6489 0.9911 -3.4791 8 8 0.4422 1.1059 -3.5189 9 6 2.3795 0.3168 -4.6117 10 16 1.1890 -0.2081 -5.8698 11 6 2.2835 -0.9417 -7.0397 12 1 3.3461 -0.9601 -6.8472 13 6 1.7802 -1.4960 -8.2084 14 7 0.4851 -1.4740 -8.4427 15 14 2.9405 -2.2744 -9.4482 16 1 3.1093 -3.7153 -9.1314 17 1 2.3748 -2.1306 -10.8137 18 1 4.2599 -1.5958 -9.3851 19 6 3.7985 1.3341 -2.3589 20 6 4.1758 0.6588 -1.0367 21 6 3.5652 1.4450 0.1256 22 1 3.9300 2.4718 0.1005 23 7 3.9526 0.8190 1.3969 24 6 5.2670 1.3009 1.8419 25 6 5.6351 0.6286 3.1661 26 6 7.0043 1.1300 3.6293 27 8 7.3484 0.5016 4.8658 28 6 8.6162 0.9032 5.3889 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.5612 2.0404 -1.4526 35 1 1.9211 3.1789 -1.2748 36 1 3.0904 1.0157 -5.0526 37 1 2.9139 -0.5540 -4.2319 38 1 0.1334 -1.8609 -9.2596 39 1 4.1465 0.7247 -3.1930 40 1 4.2575 2.3215 -2.4113 41 1 5.2608 0.6411 -0.9338 42 1 3.7924 -0.3615 -1.0270 43 1 3.9426 -0.1872 1.3224 44 1 5.2299 2.3813 1.9814 45 1 6.0172 1.0572 1.0896 46 1 5.6722 -0.4519 3.0271 47 1 4.8849 0.8726 3.9184 48 1 6.9676 2.2105 3.7684 49 1 7.7544 0.8856 2.8771 50 1 8.8032 0.3824 6.3281 51 1 8.6124 1.9789 5.5649 52 1 9.3997 0.6549 4.6730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754478940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:14 Heat of formation + Delta-G solvation = -117.141330 kcal Electronic energy + Delta-G solvation = -28365.818699 eV Core-core repulsion = 24490.073630 eV Total energy + Delta-G solvation = -3875.745068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50392 -39.44471 -38.85981 -36.69233 -35.20567 -34.59099 -33.44784 -31.48427 -31.07925 -29.58742 -27.74658 -27.56712 -25.93381 -24.88421 -24.23149 -23.25785 -22.32520 -21.32410 -19.80985 -19.16179 -18.17005 -17.46075 -17.19188 -16.92053 -16.88763 -16.83599 -16.29061 -16.12260 -15.80508 -15.76383 -15.66745 -15.36002 -14.87582 -14.56220 -14.40702 -14.22191 -13.94919 -13.59824 -13.44313 -13.26138 -13.16686 -13.12214 -12.91041 -12.88426 -12.70140 -12.60337 -12.58035 -12.26636 -12.23590 -11.96789 -11.84835 -11.71729 -11.52500 -11.45722 -11.14968 -11.11650 -10.78879 -10.60886 -10.26336 -9.64203 -9.26126 -8.67239 -8.35017 -6.13221 1.25749 1.41536 1.45794 1.55994 1.61963 2.13937 2.27129 2.70560 2.98995 3.25516 3.34344 3.62149 3.73731 3.92558 3.99620 4.05131 4.07731 4.14844 4.23747 4.24858 4.31499 4.40949 4.42567 4.47612 4.48489 4.52672 4.56762 4.57661 4.62133 4.69101 4.73334 4.75321 4.80643 4.83854 4.87147 4.96144 5.00775 5.07771 5.19969 5.23372 5.25845 5.30327 5.40717 5.40906 5.48053 5.66346 6.12463 6.18998 6.26042 6.33127 6.47302 7.06051 7.19613 8.74183 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.002059 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.122701 B =13596.868566 C =14900.401155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.078 4.078 4 H 0.096 0.904 5 C 0.110 3.890 6 N -0.601 5.601 7 C 0.533 3.467 8 O -0.564 6.564 9 C -0.123 4.123 10 S -0.151 6.151 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.257 1.257 19 C 0.104 3.896 20 C -0.159 4.159 21 C 0.104 3.896 22 H 0.092 0.908 23 N -0.685 5.685 24 C 0.067 3.933 25 C -0.112 4.112 26 C 0.061 3.939 27 O -0.422 6.422 28 C 0.026 3.974 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.271 0.729 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.344 0.656 44 H 0.079 0.921 45 H 0.041 0.959 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.093 0.907 51 H 0.050 0.950 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.342 7.703 26.185 32.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.098 4.098 4 H 0.114 0.886 5 C -0.013 4.013 6 N -0.335 5.335 7 C 0.320 3.680 8 O -0.442 6.442 9 C -0.274 4.274 10 S 0.077 5.923 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.181 1.181 19 C -0.019 4.019 20 C -0.199 4.199 21 C -0.006 4.006 22 H 0.110 0.890 23 N -0.315 5.315 24 C -0.062 4.062 25 C -0.150 4.150 26 C -0.016 4.016 27 O -0.341 6.341 28 C -0.070 4.070 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.163 0.837 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.111 0.889 51 H 0.069 0.931 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.976 8.167 26.532 31.542 hybrid contribution 2.160 -1.051 -1.711 2.950 sum 17.136 7.115 24.820 30.989 Atomic orbital electron populations 1.21794 0.96828 1.01107 1.01310 1.21439 0.95129 0.96770 1.01206 1.21458 0.95747 0.96351 0.96199 0.88552 1.21828 0.98076 0.96373 0.84996 1.48017 1.08382 1.58084 1.18975 1.20045 0.87018 0.77794 0.83101 1.90671 1.15866 1.58279 1.79426 1.23365 1.02838 1.03459 0.97777 1.85588 1.13242 1.75365 1.18145 1.23189 0.95294 1.44021 1.06875 0.90003 1.26121 0.97390 0.95921 0.99668 1.70183 1.13873 1.43907 1.26771 0.84965 0.78065 0.78515 0.76510 1.19329 1.20280 1.18125 1.21920 0.78250 1.02547 0.99141 1.22644 1.02120 1.00266 0.94848 1.21444 0.93771 0.98740 0.86679 0.89020 1.60515 1.29114 1.12152 1.29744 1.21826 0.89407 1.00202 0.94753 1.21389 0.95502 1.00718 0.97351 1.22552 0.96723 0.96896 0.85452 1.87835 1.38267 1.68583 1.39442 1.22905 0.84194 1.00299 0.99638 0.93721 0.91447 0.94605 0.94163 0.90391 0.90926 0.89826 0.87701 0.87937 0.92003 0.89760 0.88994 0.88839 0.91821 0.83740 0.90280 0.94071 0.91863 0.91371 0.92317 0.92537 0.88879 0.93125 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.68 71.98 0.70 -3.03 16 2 C -0.11 -2.26 4.67 30.59 0.14 -2.12 16 3 C -0.08 -1.35 2.38 -10.72 -0.03 -1.37 16 4 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 5 C 0.11 2.48 5.70 86.36 0.49 2.97 16 6 N -0.60 -15.72 2.33 -818.89 -1.91 -17.62 16 7 C 0.53 20.16 7.72 87.66 0.68 20.84 16 8 O -0.56 -26.49 15.27 -3.03 -0.05 -26.54 16 9 C -0.12 -4.98 4.50 71.24 0.32 -4.66 16 10 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 11 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 12 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 13 C 0.01 0.79 5.49 84.86 0.47 1.25 16 14 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 15 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 19 C 0.10 1.88 6.34 86.36 0.55 2.43 16 20 C -0.16 -2.19 4.99 30.67 0.15 -2.04 16 21 C 0.10 1.33 2.13 44.94 0.10 1.43 16 22 H 0.09 1.02 7.80 -2.39 -0.02 1.00 16 23 N -0.69 -8.06 5.80 -491.42 -2.85 -10.91 16 24 C 0.07 0.62 5.48 86.30 0.47 1.10 16 25 C -0.11 -1.25 5.84 30.59 0.18 -1.07 16 26 C 0.06 0.66 5.94 71.98 0.43 1.09 16 27 O -0.42 -6.48 10.70 -148.98 -1.59 -8.07 16 28 C 0.03 0.23 11.01 113.37 1.25 1.48 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.03 1.08 6.46 -2.39 -0.02 1.06 16 32 H 0.04 1.02 6.13 -2.38 -0.01 1.01 16 33 H 0.08 1.41 7.00 -2.39 -0.02 1.39 16 34 H 0.07 2.09 5.21 -2.39 -0.01 2.08 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 3.85 7.94 -2.39 -0.02 3.83 16 37 H 0.10 3.79 7.69 -2.39 -0.02 3.78 16 38 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.08 1.64 5.93 -2.39 -0.01 1.62 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 0.93 7.42 -2.39 -0.02 0.91 16 42 H 0.06 1.08 6.45 -2.39 -0.02 1.06 16 43 H 0.34 4.16 7.63 -89.70 -0.68 3.48 16 44 H 0.08 0.68 8.06 -2.39 -0.02 0.66 16 45 H 0.04 0.33 7.41 -2.39 -0.02 0.31 16 46 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 47 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 52 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 Total: -1.00 -76.41 415.10 1.50 -74.91 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.21 Total: 20.53 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 6.54 Total: -12.36 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -4.47 Total: -84.47 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.64 Total: -34.61 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -76.41 1.50 -74.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754478940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.232 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds