Wall clock time and date at job start Wed Apr 1 2020 03:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46956 * 2 1 4 4 H 1.09001 * 109.47161 * 304.99330 * 3 2 1 5 5 S 1.81400 * 109.47347 * 64.99597 * 3 2 1 6 6 C 1.81408 * 102.99949 * 187.96517 * 5 3 2 7 7 C 1.50701 * 109.47259 * 184.99841 * 3 2 1 8 8 O 1.21285 * 119.99841 * 324.88847 * 7 3 2 9 9 N 1.34779 * 120.00520 * 144.89077 * 7 3 2 10 10 C 1.46921 * 120.63458 * 174.65089 * 9 7 3 11 11 C 1.53625 * 108.54283 * 126.36511 * 10 9 7 12 12 C 1.53033 * 109.24072 * 54.85710 * 11 10 9 13 13 N 1.46499 * 109.46037 * 178.48814 * 12 11 10 14 14 C 1.36943 * 120.00102 * 238.31618 * 13 12 11 15 15 H 1.08000 * 119.99692 * 150.21362 * 14 13 12 16 16 C 1.38808 * 119.99659 * 330.20749 * 14 13 12 17 17 N 1.31615 * 120.00774 * 341.20005 * 16 14 13 18 18 Si 1.86804 * 119.99752 * 161.19980 * 16 14 13 19 19 H 1.48505 * 109.46994 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47063 * 119.99808 * 18 16 14 21 21 H 1.48496 * 109.47097 * 240.00089 * 18 16 14 22 22 C 1.46499 * 120.00075 * 58.31327 * 13 12 11 23 23 C 1.52998 * 109.46935 * 90.00196 * 22 13 12 24 24 O 1.42894 * 109.47398 * 65.00443 * 23 22 13 25 25 C 1.42905 * 114.00292 * 180.02562 * 24 23 22 26 26 C 1.53041 * 109.54148 * 298.50925 * 12 11 10 27 27 C 1.46928 * 120.62700 * 354.92533 * 9 7 3 28 28 H 1.08997 * 109.46527 * 60.00694 * 1 2 3 29 29 H 1.08996 * 109.46751 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47201 * 299.99989 * 1 2 3 31 31 H 1.09006 * 109.47102 * 119.99333 * 2 1 3 32 32 H 1.08993 * 109.47815 * 239.99321 * 2 1 3 33 33 H 1.08997 * 109.47070 * 300.13765 * 6 5 3 34 34 H 1.08998 * 109.47032 * 60.14217 * 6 5 3 35 35 H 1.09003 * 109.47127 * 180.13918 * 6 5 3 36 36 H 1.09003 * 109.58567 * 246.20409 * 10 9 7 37 37 H 1.08996 * 109.58382 * 6.62547 * 10 9 7 38 38 H 1.08995 * 109.63138 * 294.86192 * 11 10 9 39 39 H 1.09005 * 109.42521 * 174.72556 * 11 10 9 40 40 H 1.09005 * 109.45077 * 58.52308 * 12 11 10 41 41 H 0.96999 * 120.00403 * 185.03144 * 17 16 14 42 42 H 1.09002 * 109.47522 * 209.99983 * 22 13 12 43 43 H 1.09002 * 109.46885 * 330.00464 * 22 13 12 44 44 H 1.09005 * 109.47207 * 185.00281 * 23 22 13 45 45 H 1.09002 * 109.47487 * 305.00080 * 23 22 13 46 46 H 1.08998 * 109.47059 * 179.97438 * 25 24 23 47 47 H 1.08998 * 109.46709 * 299.99698 * 25 24 23 48 48 H 1.08999 * 109.47019 * 59.99782 * 25 24 23 49 49 H 1.08996 * 109.49763 * 301.41723 * 26 12 11 50 50 H 1.09001 * 109.49935 * 181.31604 * 26 12 11 51 51 H 1.09005 * 109.58870 * 353.38033 * 27 9 7 52 52 H 1.09003 * 109.58833 * 113.65562 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 16 1.5600 2.2536 1.5499 6 6 2.0254 3.9838 1.2662 7 6 3.5419 1.4444 -0.1238 8 8 4.1949 0.5687 0.4033 9 7 4.1596 2.4191 -0.8201 10 6 5.6261 2.5016 -0.8528 11 6 6.0809 2.5371 -2.3198 12 6 5.3709 3.6855 -3.0402 13 7 5.8283 3.7464 -4.4306 14 6 6.4083 4.8901 -4.9113 15 1 7.1485 4.8316 -5.6955 16 6 6.0446 6.1243 -4.3906 17 7 4.9161 6.2513 -3.7253 18 14 7.1569 7.6052 -4.6340 19 1 8.3563 7.2010 -5.4109 20 1 6.4206 8.6608 -5.3748 21 1 7.5778 8.1310 -3.3106 22 6 5.6653 2.5838 -5.3069 23 6 4.3125 2.6660 -6.0170 24 8 4.2992 3.7997 -6.8868 25 6 3.0736 3.9695 -7.6018 26 6 3.8588 3.4514 -3.0107 27 6 3.3790 3.4229 -1.5562 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.8935 -0.5139 -0.8898 33 1 3.0964 4.0450 1.0731 34 1 1.4784 4.3709 0.4065 35 1 1.7809 4.5752 2.1486 36 1 5.9524 3.4087 -0.3440 37 1 6.0522 1.6291 -0.3577 38 1 5.8299 1.5934 -2.8039 39 1 7.1590 2.6926 -2.3614 40 1 5.6026 4.6261 -2.5403 41 1 4.6262 7.1268 -3.4246 42 1 6.4645 2.5724 -6.0481 43 1 5.7084 1.6715 -4.7119 44 1 4.1523 1.7590 -6.5999 45 1 3.5190 2.7669 -5.2765 46 1 3.1439 4.8510 -8.2390 47 1 2.8874 3.0895 -8.2175 48 1 2.2548 4.0976 -6.8939 49 1 3.6288 2.4991 -3.4883 50 1 3.3553 4.2576 -3.5442 51 1 2.3219 3.1585 -1.5252 52 1 3.5237 4.4033 -1.1021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754549808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:18 Heat of formation + Delta-G solvation = -53.784563 kcal Electronic energy + Delta-G solvation = -30771.193196 eV Core-core repulsion = 26898.195483 eV Total energy + Delta-G solvation = -3872.997713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.07177 -37.85614 -36.77994 -34.98227 -34.63880 -31.81961 -31.21287 -30.55618 -29.01789 -28.34749 -27.75093 -25.67044 -24.77078 -23.26192 -22.87627 -21.82718 -21.08256 -19.72716 -18.50432 -17.37476 -16.84509 -16.72670 -15.79063 -15.68586 -15.26417 -15.01332 -14.74093 -14.49080 -14.11186 -14.03966 -13.79746 -13.74384 -13.50796 -13.35509 -13.26230 -13.03033 -12.73249 -12.38491 -12.22772 -12.06223 -11.85225 -11.74059 -11.54862 -11.36540 -11.27006 -11.14569 -11.10079 -10.84650 -10.81640 -10.70467 -10.29390 -10.18391 -9.94424 -9.88948 -9.77515 -9.63978 -9.40720 -8.79748 -8.43786 -8.32598 -7.75737 -6.65422 -5.79826 -3.18500 1.33917 2.23421 3.01759 3.20541 3.37032 3.46079 3.48553 4.42133 4.49213 4.54355 4.62190 4.77299 5.07765 5.11302 5.16150 5.24231 5.28639 5.37290 5.38270 5.57044 5.58727 5.64311 5.68510 5.70573 5.79883 5.81832 5.85214 5.88765 5.95996 5.99157 6.07794 6.13744 6.16165 6.17335 6.23275 6.27708 6.31957 6.40012 6.58444 6.62300 6.74917 6.80964 6.90262 7.41446 7.56476 7.61420 7.88282 8.01686 8.29639 8.49715 9.23937 9.84187 10.37469 11.30169 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.003712 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.858919 B = 7541.361001 C = 8338.734196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 C -0.085 4.085 4 H 0.110 0.890 5 S -0.215 6.215 6 C -0.134 4.134 7 C 0.518 3.482 8 O -0.538 6.538 9 N -0.601 5.601 10 C 0.117 3.883 11 C -0.151 4.151 12 C 0.196 3.804 13 N -0.576 5.576 14 C -0.231 4.231 15 H 0.065 0.935 16 C 0.008 3.992 17 N -0.902 5.902 18 Si 0.896 3.104 19 H -0.279 1.279 20 H -0.293 1.293 21 H -0.292 1.292 22 C 0.143 3.857 23 C 0.040 3.960 24 O -0.354 6.354 25 C 0.035 3.965 26 C -0.130 4.130 27 C 0.104 3.896 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.250 0.750 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.017 0.983 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.023 0.977 48 H 0.030 0.970 49 H 0.039 0.961 50 H 0.096 0.904 51 H 0.067 0.933 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.617 -7.439 5.065 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.130 4.130 3 C -0.217 4.217 4 H 0.128 0.872 5 S 0.012 5.988 6 C -0.302 4.302 7 C 0.302 3.698 8 O -0.415 6.415 9 N -0.335 5.335 10 C -0.005 4.005 11 C -0.191 4.191 12 C 0.089 3.911 13 N -0.295 5.295 14 C -0.361 4.361 15 H 0.082 0.918 16 C -0.189 4.189 17 N -0.548 5.548 18 Si 0.727 3.273 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.219 1.219 22 C 0.016 3.984 23 C -0.040 4.040 24 O -0.272 6.272 25 C -0.062 4.062 26 C -0.169 4.169 27 C -0.018 4.018 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.057 0.943 50 H 0.114 0.886 51 H 0.085 0.915 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.570 -8.043 6.333 13.351 hybrid contribution 0.508 1.453 -1.449 2.114 sum -8.062 -6.590 4.884 11.501 Atomic orbital electron populations 1.21851 0.94532 1.01991 1.02727 1.21182 0.96330 0.91484 1.03964 1.23568 0.96089 1.02417 0.99585 0.87218 1.86771 1.81615 1.06687 1.23761 1.23626 1.05394 0.94952 1.06269 1.20255 0.89207 0.81645 0.78674 1.90655 1.66462 1.36454 1.47970 1.48252 1.07703 1.28714 1.48798 1.21714 0.78494 1.02081 0.98226 1.22648 1.01330 1.01281 0.93857 1.20216 0.89223 0.96654 0.85050 1.43938 1.69502 1.10838 1.05174 1.19103 1.14790 0.83709 1.18474 0.91773 1.24920 0.96076 0.97093 1.00842 1.69909 1.19865 1.22119 1.42876 0.86310 0.80612 0.83200 0.77170 1.20428 1.22006 1.21871 1.20985 0.93439 0.91175 0.92771 1.23570 1.01865 0.86467 0.92076 1.88145 1.33344 1.47604 1.58109 1.22579 0.88400 0.99816 0.95408 1.22454 1.00898 1.01007 0.92568 1.22069 0.94008 0.91248 0.94515 0.92551 0.92269 0.91392 0.90055 0.90475 0.89891 0.89908 0.87928 0.91680 0.89866 0.92982 0.91165 0.87937 0.94000 0.93114 0.93041 0.96455 0.93723 0.90697 0.95850 0.95089 0.94281 0.88588 0.91532 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.74 37.16 0.36 -1.07 16 2 C -0.09 -1.06 4.98 -26.73 -0.13 -1.19 16 3 C -0.09 -1.09 2.17 -27.88 -0.06 -1.15 16 4 H 0.11 1.29 5.53 -51.92 -0.29 1.00 16 5 S -0.21 -2.64 20.57 -107.50 -2.21 -4.85 16 6 C -0.13 -1.44 9.54 101.05 0.96 -0.48 16 7 C 0.52 8.13 6.53 -10.98 -0.07 8.06 16 8 O -0.54 -10.06 15.79 5.55 0.09 -9.97 16 9 N -0.60 -9.31 2.82 -172.50 -0.49 -9.80 16 10 C 0.12 1.90 6.47 -3.49 -0.02 1.88 16 11 C -0.15 -2.67 5.29 -26.39 -0.14 -2.81 16 12 C 0.20 3.97 1.62 -67.89 -0.11 3.86 16 13 N -0.58 -12.92 2.39 -165.62 -0.40 -13.31 16 14 C -0.23 -5.91 9.06 -15.06 -0.14 -6.05 16 15 H 0.06 1.70 7.90 -52.49 -0.41 1.29 16 16 C 0.01 0.22 4.83 -17.43 -0.08 0.13 16 17 N -0.90 -23.32 10.45 55.49 0.58 -22.74 16 18 Si 0.90 20.96 29.60 -169.99 -5.03 15.93 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.14 2.83 5.57 -4.04 -0.02 2.81 16 23 C 0.04 0.75 6.05 37.16 0.22 0.97 16 24 O -0.35 -7.50 10.18 -35.23 -0.36 -7.86 16 25 C 0.04 0.59 11.01 101.05 1.11 1.70 16 26 C -0.13 -2.36 4.08 -26.61 -0.11 -2.47 16 27 C 0.10 1.57 4.87 -3.71 -0.02 1.56 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.65 7.13 -51.93 -0.37 0.28 16 31 H 0.08 1.04 8.02 -51.93 -0.42 0.63 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.00 7.10 -51.93 -0.37 0.63 16 34 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 38 H 0.05 0.92 6.67 -51.93 -0.35 0.57 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.10 2.42 5.89 -51.93 -0.31 2.12 16 41 H 0.25 6.39 8.32 -40.82 -0.34 6.05 16 42 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 43 H 0.05 0.92 6.37 -51.93 -0.33 0.59 16 44 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.04 0.86 5.37 -51.93 -0.28 0.58 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.04 0.70 6.33 -51.93 -0.33 0.37 16 50 H 0.10 2.06 7.38 -51.93 -0.38 1.68 16 51 H 0.07 0.87 5.21 -51.93 -0.27 0.60 16 52 H 0.07 1.15 7.63 -51.93 -0.40 0.75 16 LS Contribution 404.35 15.07 6.09 6.09 Total: -1.00 -28.59 404.35 -9.03 -37.62 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -9.06 Total: 3.12 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 1.76 Total: 5.76 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.30 Total: -45.84 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.27 Total: -17.83 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -2.21 Total: -4.85 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.59 -9.03 -37.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754549808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.163 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds