Wall clock time and date at job start Wed Apr 1 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46956 * 2 1 4 4 H 1.09001 * 109.47161 * 304.99330 * 3 2 1 5 5 S 1.81400 * 109.47347 * 64.99597 * 3 2 1 6 6 C 1.81408 * 102.99949 * 187.96517 * 5 3 2 7 7 C 1.50701 * 109.47259 * 184.99841 * 3 2 1 8 8 O 1.21285 * 119.99841 * 324.88847 * 7 3 2 9 9 N 1.34779 * 120.00520 * 144.89077 * 7 3 2 10 10 C 1.46921 * 120.63458 * 174.65089 * 9 7 3 11 11 C 1.53625 * 108.54283 * 126.36511 * 10 9 7 12 12 C 1.53033 * 109.24072 * 54.85710 * 11 10 9 13 13 N 1.46499 * 109.46037 * 178.48814 * 12 11 10 14 14 C 1.36943 * 120.00102 * 238.31618 * 13 12 11 15 15 H 1.08000 * 119.99692 * 150.21362 * 14 13 12 16 16 C 1.38808 * 119.99659 * 330.20749 * 14 13 12 17 17 N 1.31615 * 120.00774 * 341.20005 * 16 14 13 18 18 Si 1.86804 * 119.99752 * 161.19980 * 16 14 13 19 19 H 1.48505 * 109.46994 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47063 * 119.99808 * 18 16 14 21 21 H 1.48496 * 109.47097 * 240.00089 * 18 16 14 22 22 C 1.46499 * 120.00075 * 58.31327 * 13 12 11 23 23 C 1.52998 * 109.46935 * 90.00196 * 22 13 12 24 24 O 1.42894 * 109.47398 * 65.00443 * 23 22 13 25 25 C 1.42905 * 114.00292 * 180.02562 * 24 23 22 26 26 C 1.53041 * 109.54148 * 298.50925 * 12 11 10 27 27 C 1.46928 * 120.62700 * 354.92533 * 9 7 3 28 28 H 1.08997 * 109.46527 * 60.00694 * 1 2 3 29 29 H 1.08996 * 109.46751 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47201 * 299.99989 * 1 2 3 31 31 H 1.09006 * 109.47102 * 119.99333 * 2 1 3 32 32 H 1.08993 * 109.47815 * 239.99321 * 2 1 3 33 33 H 1.08997 * 109.47070 * 300.13765 * 6 5 3 34 34 H 1.08998 * 109.47032 * 60.14217 * 6 5 3 35 35 H 1.09003 * 109.47127 * 180.13918 * 6 5 3 36 36 H 1.09003 * 109.58567 * 246.20409 * 10 9 7 37 37 H 1.08996 * 109.58382 * 6.62547 * 10 9 7 38 38 H 1.08995 * 109.63138 * 294.86192 * 11 10 9 39 39 H 1.09005 * 109.42521 * 174.72556 * 11 10 9 40 40 H 1.09005 * 109.45077 * 58.52308 * 12 11 10 41 41 H 0.96999 * 120.00403 * 185.03144 * 17 16 14 42 42 H 1.09002 * 109.47522 * 209.99983 * 22 13 12 43 43 H 1.09002 * 109.46885 * 330.00464 * 22 13 12 44 44 H 1.09005 * 109.47207 * 185.00281 * 23 22 13 45 45 H 1.09002 * 109.47487 * 305.00080 * 23 22 13 46 46 H 1.08998 * 109.47059 * 179.97438 * 25 24 23 47 47 H 1.08998 * 109.46709 * 299.99698 * 25 24 23 48 48 H 1.08999 * 109.47019 * 59.99782 * 25 24 23 49 49 H 1.08996 * 109.49763 * 301.41723 * 26 12 11 50 50 H 1.09001 * 109.49935 * 181.31604 * 26 12 11 51 51 H 1.09005 * 109.58870 * 353.38033 * 27 9 7 52 52 H 1.09003 * 109.58833 * 113.65562 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 16 1.5600 2.2536 1.5499 6 6 2.0254 3.9838 1.2662 7 6 3.5419 1.4444 -0.1238 8 8 4.1949 0.5687 0.4033 9 7 4.1596 2.4191 -0.8201 10 6 5.6261 2.5016 -0.8528 11 6 6.0809 2.5371 -2.3198 12 6 5.3709 3.6855 -3.0402 13 7 5.8283 3.7464 -4.4306 14 6 6.4083 4.8901 -4.9113 15 1 7.1485 4.8316 -5.6955 16 6 6.0446 6.1243 -4.3906 17 7 4.9161 6.2513 -3.7253 18 14 7.1569 7.6052 -4.6340 19 1 8.3563 7.2010 -5.4109 20 1 6.4206 8.6608 -5.3748 21 1 7.5778 8.1310 -3.3106 22 6 5.6653 2.5838 -5.3069 23 6 4.3125 2.6660 -6.0170 24 8 4.2992 3.7997 -6.8868 25 6 3.0736 3.9695 -7.6018 26 6 3.8588 3.4514 -3.0107 27 6 3.3790 3.4229 -1.5562 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.8935 -0.5139 -0.8898 33 1 3.0964 4.0450 1.0731 34 1 1.4784 4.3709 0.4065 35 1 1.7809 4.5752 2.1486 36 1 5.9524 3.4087 -0.3440 37 1 6.0522 1.6291 -0.3577 38 1 5.8299 1.5934 -2.8039 39 1 7.1590 2.6926 -2.3614 40 1 5.6026 4.6261 -2.5403 41 1 4.6262 7.1268 -3.4246 42 1 6.4645 2.5724 -6.0481 43 1 5.7084 1.6715 -4.7119 44 1 4.1523 1.7590 -6.5999 45 1 3.5190 2.7669 -5.2765 46 1 3.1439 4.8510 -8.2390 47 1 2.8874 3.0895 -8.2175 48 1 2.2548 4.0976 -6.8939 49 1 3.6288 2.4991 -3.4883 50 1 3.3553 4.2576 -3.5442 51 1 2.3219 3.1585 -1.5252 52 1 3.5237 4.4033 -1.1021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754549808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:14 Heat of formation + Delta-G solvation = -68.793518 kcal Electronic energy + Delta-G solvation = -30771.844033 eV Core-core repulsion = 26898.195483 eV Total energy + Delta-G solvation = -3873.648550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.37602 -39.36699 -38.23396 -36.54131 -35.61800 -33.59399 -32.67304 -31.96247 -30.07674 -29.75540 -28.83649 -27.10817 -26.29767 -24.84262 -24.19909 -22.93114 -22.53972 -21.17233 -19.87724 -18.93878 -18.32083 -17.78355 -17.23840 -16.98886 -16.67705 -16.37520 -16.23593 -15.70793 -15.63304 -15.47964 -15.21297 -15.08638 -14.83575 -14.48825 -14.39978 -14.26465 -13.84170 -13.67666 -13.52907 -13.29024 -13.07700 -13.06873 -12.92776 -12.86732 -12.69251 -12.64648 -12.41176 -12.25336 -12.10000 -11.98262 -11.97367 -11.64705 -11.56969 -11.42584 -11.14935 -11.05057 -10.81802 -10.32664 -10.26178 -9.67468 -8.72881 -8.45589 -7.74615 -5.12718 0.34403 1.26848 1.47535 1.53066 1.59630 1.80307 2.00536 2.59806 3.18719 3.26977 3.43439 3.56277 3.65119 3.72931 4.08001 4.19910 4.24632 4.26074 4.29192 4.35639 4.36979 4.39782 4.48877 4.49480 4.51292 4.61637 4.65017 4.74176 4.76755 4.77945 4.81774 4.83551 4.85139 4.88762 4.92479 5.07431 5.10233 5.13515 5.16892 5.25152 5.32488 5.40031 5.42961 5.78434 5.83238 5.98353 6.34523 6.54101 6.65108 7.03854 7.34846 8.01305 8.49114 9.32379 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.003712 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.858919 B = 7541.361001 C = 8338.734196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.081 4.081 4 H 0.124 0.876 5 S -0.223 6.223 6 C -0.131 4.131 7 C 0.517 3.483 8 O -0.569 6.569 9 N -0.599 5.599 10 C 0.122 3.878 11 C -0.138 4.138 12 C 0.198 3.802 13 N -0.588 5.588 14 C -0.236 4.236 15 H 0.047 0.953 16 C -0.028 4.028 17 N -0.911 5.911 18 Si 0.942 3.058 19 H -0.280 1.280 20 H -0.299 1.299 21 H -0.293 1.293 22 C 0.141 3.859 23 C 0.044 3.956 24 O -0.395 6.395 25 C 0.033 3.967 26 C -0.114 4.114 27 C 0.115 3.885 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.245 0.755 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.041 0.959 46 H 0.079 0.921 47 H 0.051 0.949 48 H 0.031 0.969 49 H 0.044 0.956 50 H 0.065 0.935 51 H 0.094 0.906 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 -8.240 5.211 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.212 4.212 4 H 0.141 0.859 5 S 0.003 5.997 6 C -0.299 4.299 7 C 0.303 3.697 8 O -0.449 6.449 9 N -0.332 5.332 10 C -0.001 4.001 11 C -0.178 4.178 12 C 0.091 3.909 13 N -0.308 5.308 14 C -0.367 4.367 15 H 0.065 0.935 16 C -0.224 4.224 17 N -0.557 5.557 18 Si 0.773 3.227 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.220 1.220 22 C 0.015 3.985 23 C -0.034 4.034 24 O -0.314 6.314 25 C -0.064 4.064 26 C -0.154 4.154 27 C -0.007 4.007 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.137 0.863 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.098 0.902 47 H 0.069 0.931 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.084 0.916 51 H 0.112 0.888 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.120 -8.855 6.476 14.926 hybrid contribution 1.021 1.683 -1.522 2.488 sum -9.099 -7.173 4.954 12.601 Atomic orbital electron populations 1.21806 0.92566 1.02990 1.03047 1.21197 0.97946 0.90480 1.03210 1.23582 0.93629 1.03573 1.00388 0.85865 1.86864 1.81245 1.07857 1.23727 1.23679 1.04559 0.94047 1.07637 1.20772 0.90439 0.80737 0.77732 1.90643 1.67497 1.37579 1.49180 1.48243 1.07346 1.28789 1.48781 1.21598 0.79246 1.02178 0.97044 1.22456 1.00656 1.00120 0.94527 1.20138 0.90794 0.95970 0.83989 1.44045 1.69782 1.10635 1.06347 1.19095 1.14553 0.85082 1.17956 0.93548 1.25334 0.97043 0.98552 1.01492 1.70011 1.20385 1.21889 1.43403 0.85602 0.79360 0.81082 0.76668 1.20532 1.22659 1.21990 1.21063 0.93936 0.90868 0.92632 1.23467 1.00687 0.87104 0.92190 1.88077 1.35676 1.48727 1.58885 1.22722 0.86803 1.01394 0.95464 1.22173 0.99014 0.99928 0.94306 1.21962 0.95252 0.91179 0.92333 0.91578 0.91009 0.91639 0.91594 0.90502 0.91266 0.88776 0.86272 0.91433 0.89916 0.92661 0.91809 0.91302 0.94522 0.94121 0.91065 0.93558 0.94114 0.90210 0.93093 0.95037 0.93702 0.91616 0.88805 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.74 71.98 0.70 -1.67 16 2 C -0.09 -1.92 4.98 30.59 0.15 -1.77 16 3 C -0.08 -1.89 2.17 29.85 0.06 -1.83 16 4 H 0.12 2.53 5.53 -2.39 -0.01 2.51 16 5 S -0.22 -5.06 20.57 -56.49 -1.16 -6.22 16 6 C -0.13 -2.55 9.54 113.37 1.08 -1.46 16 7 C 0.52 15.50 6.53 87.66 0.57 16.07 16 8 O -0.57 -20.79 15.79 -3.04 -0.05 -20.83 16 9 N -0.60 -17.76 2.82 -818.06 -2.31 -20.06 16 10 C 0.12 3.88 6.47 86.51 0.56 4.44 16 11 C -0.14 -4.79 5.29 30.82 0.16 -4.63 16 12 C 0.20 8.02 1.62 45.02 0.07 8.09 16 13 N -0.59 -26.53 2.39 -677.89 -1.62 -28.15 16 14 C -0.24 -12.27 9.06 84.03 0.76 -11.51 16 15 H 0.05 2.53 7.90 -2.91 -0.02 2.51 16 16 C -0.03 -1.45 4.83 84.86 0.41 -1.04 16 17 N -0.91 -47.64 10.45 21.65 0.23 -47.42 16 18 Si 0.94 43.67 29.60 68.60 2.03 45.70 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 C 0.14 5.49 5.57 86.38 0.48 5.97 16 23 C 0.04 1.61 6.05 71.98 0.44 2.05 16 24 O -0.39 -16.44 10.18 -148.98 -1.52 -17.95 16 25 C 0.03 1.04 11.01 113.37 1.25 2.29 16 26 C -0.11 -4.09 4.08 30.67 0.13 -3.96 16 27 C 0.12 3.30 4.87 86.36 0.42 3.72 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.10 7.13 -2.39 -0.02 1.09 16 31 H 0.07 1.62 8.02 -2.38 -0.02 1.60 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.56 7.10 -2.39 -0.02 1.54 16 34 H 0.09 1.62 8.13 -2.39 -0.02 1.60 16 35 H 0.12 1.91 8.14 -2.39 -0.02 1.90 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 2.67 7.00 -2.39 -0.02 2.65 16 38 H 0.05 1.88 6.67 -2.39 -0.02 1.87 16 39 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.07 3.30 5.89 -2.38 -0.01 3.29 16 41 H 0.25 12.68 8.32 -92.71 -0.77 11.91 16 42 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 43 H 0.07 2.44 6.37 -2.39 -0.02 2.43 16 44 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.04 1.50 5.37 -2.39 -0.01 1.49 16 46 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.04 1.53 6.33 -2.39 -0.02 1.52 16 50 H 0.07 2.80 7.38 -2.39 -0.02 2.78 16 51 H 0.09 2.20 5.21 -2.38 -0.01 2.18 16 52 H 0.07 2.11 7.63 -2.39 -0.02 2.09 16 Total: -1.00 -61.82 404.35 3.74 -58.08 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.89 Total: 22.09 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 7.25 Total: 14.76 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -3.70 Total: -95.63 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.56 Total: -38.79 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -1.16 Total: -6.22 kcal Total: -61.82 3.74 -58.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754549808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.711 kcal (2) G-P(sol) polarization free energy of solvation -61.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds