Wall clock time and date at job start Wed Apr 1 2020 03:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46900 * 2 1 4 4 H 1.09000 * 109.46930 * 305.50207 * 3 2 1 5 5 C 1.53005 * 109.46714 * 185.50413 * 3 2 1 6 6 N 1.46904 * 109.46442 * 179.97438 * 5 3 2 7 7 C 1.46904 * 110.99514 * 180.02562 * 6 5 3 8 8 H 1.09005 * 110.30533 * 327.17250 * 7 6 5 9 9 C 1.54391 * 110.34424 * 89.46300 * 7 6 5 10 10 N 1.48435 * 104.65325 * 142.73894 * 9 7 6 11 11 C 1.34776 * 127.98167 * 140.37345 * 10 9 7 12 12 O 1.21283 * 119.99791 * 180.08881 * 11 10 9 13 13 C 1.50695 * 120.00227 * 0.08156 * 11 10 9 14 14 S 1.80997 * 109.47194 * 180.02562 * 13 11 10 15 15 C 1.76206 * 99.99805 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00208 * 359.97438 * 15 14 13 17 17 C 1.38800 * 119.99514 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00585 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99675 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47020 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47221 * 119.99939 * 19 17 15 22 22 H 1.48501 * 109.47118 * 240.00256 * 19 17 15 23 23 C 1.48154 * 104.17972 * 320.44401 * 10 9 7 24 24 C 1.54287 * 110.34475 * 205.00174 * 7 6 5 25 25 C 1.52994 * 110.34571 * 122.25312 * 24 7 6 26 26 C 1.52999 * 110.42622 * 0.04472 * 24 7 6 27 27 O 1.42893 * 109.47358 * 65.50464 * 3 2 1 28 28 C 1.42895 * 114.00200 * 242.74079 * 27 3 2 29 29 H 1.09003 * 109.46776 * 181.82476 * 1 2 3 30 30 H 1.08997 * 109.46839 * 301.82125 * 1 2 3 31 31 H 1.08997 * 109.47090 * 61.82443 * 1 2 3 32 32 H 1.08994 * 109.47285 * 240.00142 * 2 1 3 33 33 H 1.09002 * 109.47101 * 119.99749 * 2 1 3 34 34 H 1.08996 * 109.47054 * 59.99957 * 5 3 2 35 35 H 1.09000 * 109.47254 * 299.99595 * 5 3 2 36 36 H 1.00898 * 110.99956 * 56.04905 * 6 5 3 37 37 H 1.09000 * 110.40669 * 261.52060 * 9 7 6 38 38 H 1.08998 * 110.40317 * 23.83592 * 9 7 6 39 39 H 1.09004 * 109.47311 * 300.00915 * 13 11 10 40 40 H 1.09004 * 109.46741 * 60.00122 * 13 11 10 41 41 H 0.96999 * 120.00061 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.40140 * 280.73118 * 23 10 9 43 43 H 1.08994 * 110.40727 * 158.41649 * 23 10 9 44 44 H 1.09001 * 109.47110 * 176.98797 * 25 24 7 45 45 H 1.08997 * 109.47442 * 296.99501 * 25 24 7 46 46 H 1.09000 * 109.46720 * 56.99310 * 25 24 7 47 47 H 1.08998 * 109.47315 * 302.95555 * 26 24 7 48 48 H 1.09001 * 109.47923 * 62.95699 * 26 24 7 49 49 H 1.09006 * 109.47130 * 182.96017 * 26 24 7 50 50 H 1.09002 * 109.47340 * 53.71783 * 28 27 3 51 51 H 1.09003 * 109.47676 * 173.72010 * 28 27 3 52 52 H 1.09002 * 109.47038 * 293.72320 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5984 1.9840 -0.8366 5 6 3.5638 1.4447 -0.1384 6 7 4.0533 2.8298 -0.1390 7 6 5.5158 2.8711 -0.2712 8 1 5.9643 2.0059 0.2172 9 6 5.9190 2.9185 -1.7607 10 7 7.0973 3.8202 -1.8023 11 6 8.2166 3.6888 -2.5414 12 8 9.0977 4.5183 -2.4603 13 6 8.3735 2.5112 -3.4685 14 16 9.9705 2.6172 -4.3137 15 6 9.8903 1.1613 -5.3029 16 1 9.0205 0.5230 -5.2549 17 6 10.9457 0.8342 -6.1431 18 7 12.0061 1.6118 -6.2013 19 14 10.8610 -0.7097 -7.1913 20 1 9.5725 -1.4055 -6.9446 21 1 10.9562 -0.3395 -8.6263 22 1 11.9867 -1.6110 -6.8368 23 6 6.7630 4.8987 -0.8431 24 6 6.0724 4.1768 0.3338 25 6 7.0875 3.8626 1.4346 26 6 4.9345 5.0350 0.8903 27 8 1.6722 2.0779 1.2259 28 6 0.7927 3.1921 1.0621 29 1 -0.3633 -1.0272 0.0327 30 1 -0.3633 0.5418 0.8732 31 1 -0.3633 0.4852 -0.9059 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8444 0.9601 -1.0735 35 1 4.0054 0.9033 0.6983 36 1 3.7507 3.3206 0.6890 37 1 6.1899 1.9232 -2.1130 38 1 5.1058 3.3254 -2.3618 39 1 8.3281 1.5868 -2.8927 40 1 7.5706 2.5198 -4.2057 41 1 12.7437 1.3830 -6.7881 42 1 6.0824 5.6167 -1.3007 43 1 7.6695 5.3991 -0.5028 44 1 7.5106 4.7924 1.8148 45 1 6.5907 3.3308 2.2460 46 1 7.8845 3.2406 1.0269 47 1 4.2135 5.2398 0.0990 48 1 4.4407 4.5016 1.7026 49 1 5.3387 5.9751 1.2658 50 1 -0.0791 2.8851 0.4844 51 1 0.4725 3.5494 2.0409 52 1 1.3138 3.9920 0.5360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755753282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:19 Heat of formation + Delta-G solvation = -82.201970 kcal Electronic energy + Delta-G solvation = -28798.829489 eV Core-core repulsion = 24924.599505 eV Total energy + Delta-G solvation = -3874.229984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.38490 -39.01447 -37.97121 -34.99207 -33.86502 -33.33759 -32.42129 -29.61802 -29.54006 -28.01614 -27.29133 -26.23519 -25.90754 -25.32271 -23.50712 -22.03059 -21.44911 -19.45088 -19.00958 -17.62193 -17.26981 -16.71934 -16.32861 -16.07555 -15.55174 -15.28891 -15.03283 -14.79772 -14.67795 -14.37846 -14.12533 -13.96599 -13.87906 -13.64432 -13.41970 -13.01705 -12.82191 -12.69191 -12.62813 -12.36239 -12.19340 -12.09034 -11.92184 -11.75758 -11.66924 -11.62643 -11.46501 -11.11962 -11.06664 -11.01716 -11.00239 -10.93412 -10.74412 -10.71311 -9.85947 -9.79280 -9.38205 -9.06697 -8.79283 -8.47026 -8.21439 -6.48970 -6.20876 -3.91238 2.90881 3.09316 3.21969 3.26302 3.31485 3.40762 3.58017 3.85153 4.17333 4.22013 4.39039 4.55067 4.62557 4.69709 4.71546 4.90833 4.97146 5.01539 5.06496 5.07135 5.11069 5.13093 5.14345 5.21001 5.29824 5.33079 5.36967 5.42890 5.48725 5.51142 5.57345 5.59028 5.60733 5.64894 5.70232 5.70568 5.79015 5.84294 5.89107 5.89985 5.94384 5.98335 6.10611 6.15559 6.36517 6.75483 6.84238 7.10290 7.60662 7.77992 8.36331 8.59983 9.24463 10.86628 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.002491 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.970662 B =11239.900181 C =13263.031641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.090 3.910 4 H 0.073 0.927 5 C 0.047 3.953 6 N -0.682 5.682 7 C 0.080 3.920 8 H 0.060 0.940 9 C 0.113 3.887 10 N -0.629 5.629 11 C 0.555 3.445 12 O -0.517 6.517 13 C -0.146 4.146 14 S -0.061 6.061 15 C -0.533 4.533 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.119 3.881 24 C -0.081 4.081 25 C -0.139 4.139 26 C -0.138 4.138 27 O -0.385 6.385 28 C 0.031 3.969 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.352 0.648 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.268 0.732 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.040 0.960 51 H 0.081 0.919 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.799 1.506 17.039 30.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.032 3.968 4 H 0.091 0.909 5 C -0.083 4.083 6 N -0.319 5.319 7 C -0.031 4.031 8 H 0.078 0.922 9 C -0.011 4.011 10 N -0.366 5.366 11 C 0.344 3.656 12 O -0.391 6.391 13 C -0.296 4.296 14 S 0.166 5.834 15 C -0.682 4.682 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.005 4.005 24 C -0.083 4.083 25 C -0.196 4.196 26 C -0.196 4.196 27 O -0.304 6.304 28 C -0.066 4.066 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.176 0.824 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.059 0.941 51 H 0.099 0.901 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.243 2.792 16.517 28.650 hybrid contribution -0.970 -2.248 -0.151 2.453 sum -24.213 0.544 16.366 29.230 Atomic orbital electron populations 1.21736 0.95464 1.01863 1.01777 1.21843 0.96576 0.96027 1.02926 1.22263 0.93972 0.93420 0.87135 0.90912 1.22364 0.94123 0.90298 1.01490 1.60678 1.09753 1.14472 1.46951 1.22492 0.87578 0.97055 0.95967 0.92160 1.22418 0.88013 0.94915 0.95794 1.48977 1.17711 1.26309 1.43589 1.19955 0.79417 0.86902 0.79349 1.90709 1.39502 1.43351 1.65550 1.23494 1.07505 0.98009 1.00606 1.85403 1.13324 1.34336 1.50366 1.22893 1.06889 1.10108 1.28266 0.90917 1.24995 0.94530 0.97609 0.96494 1.70027 1.06333 1.36874 1.37044 0.86117 0.78220 0.81560 0.79595 1.19618 1.20562 1.20573 1.22304 0.99790 0.90239 0.88155 1.21640 0.96029 0.95020 0.95563 1.21884 0.98502 1.02020 0.97224 1.21779 0.97613 0.99233 1.00984 1.87867 1.66353 1.45878 1.30320 1.22848 0.92889 0.88684 1.02174 0.92574 0.92370 0.92940 0.90681 0.91137 0.89800 0.94316 0.82384 0.90504 0.90029 0.89450 0.89325 0.92245 0.91235 0.89950 0.92047 0.92700 0.92105 0.91025 0.92423 0.92066 0.94105 0.90055 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.83 37.16 0.37 -0.52 16 2 C -0.14 -0.87 5.64 -26.73 -0.15 -1.02 16 3 C 0.09 0.63 2.50 -26.73 -0.07 0.57 16 4 H 0.07 0.51 7.60 -51.93 -0.39 0.11 16 5 C 0.05 0.36 5.27 -3.82 -0.02 0.34 16 6 N -0.68 -5.54 5.65 -105.24 -0.59 -6.14 16 7 C 0.08 0.77 3.04 -66.31 -0.20 0.57 16 8 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 9 C 0.11 1.32 6.63 -2.25 -0.01 1.31 16 10 N -0.63 -9.45 3.33 -169.07 -0.56 -10.01 16 11 C 0.55 11.05 7.94 -10.99 -0.09 10.97 16 12 O -0.52 -12.30 16.13 5.55 0.09 -12.21 16 13 C -0.15 -3.07 5.15 36.00 0.19 -2.88 16 14 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 15 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 16 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 19 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.12 1.47 6.13 -2.41 -0.01 1.45 16 24 C -0.08 -0.77 1.03 -153.11 -0.16 -0.93 16 25 C -0.14 -1.34 8.24 37.15 0.31 -1.03 16 26 C -0.14 -1.00 7.08 37.16 0.26 -0.74 16 27 O -0.39 -2.98 9.20 -35.23 -0.32 -3.30 16 28 C 0.03 0.17 10.70 101.05 1.08 1.25 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.36 7.75 -51.93 -0.40 -0.04 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.32 8.07 -51.93 -0.42 -0.10 16 36 H 0.35 2.73 4.95 -39.29 -0.19 2.53 16 37 H 0.08 0.90 7.33 -51.93 -0.38 0.52 16 38 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 39 H 0.09 1.71 7.96 -51.91 -0.41 1.30 16 40 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 43 H 0.08 1.14 7.60 -51.93 -0.39 0.74 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.53 7.66 -51.93 -0.40 0.13 16 48 H 0.06 0.38 6.89 -51.93 -0.36 0.02 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.04 0.20 8.10 -51.93 -0.42 -0.22 16 51 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 52 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 424.19 15.07 6.39 6.39 Total: -1.00 -33.90 424.19 -9.42 -43.32 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -9.60 Total: -1.36 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 1.69 Total: -3.69 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -0.42 Total: -41.76 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.23 Total: -15.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.90 -9.42 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755753282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.883 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds