Wall clock time and date at job start Wed Apr 1 2020 03:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46900 * 2 1 4 4 H 1.09000 * 109.46930 * 305.50207 * 3 2 1 5 5 C 1.53005 * 109.46714 * 185.50413 * 3 2 1 6 6 N 1.46904 * 109.46442 * 179.97438 * 5 3 2 7 7 C 1.46904 * 110.99514 * 180.02562 * 6 5 3 8 8 H 1.09005 * 110.30533 * 327.17250 * 7 6 5 9 9 C 1.54391 * 110.34424 * 89.46300 * 7 6 5 10 10 N 1.48435 * 104.65325 * 142.73894 * 9 7 6 11 11 C 1.34776 * 127.98167 * 140.37345 * 10 9 7 12 12 O 1.21283 * 119.99791 * 180.08881 * 11 10 9 13 13 C 1.50695 * 120.00227 * 0.08156 * 11 10 9 14 14 S 1.80997 * 109.47194 * 180.02562 * 13 11 10 15 15 C 1.76206 * 99.99805 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00208 * 359.97438 * 15 14 13 17 17 C 1.38800 * 119.99514 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00585 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99675 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47020 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47221 * 119.99939 * 19 17 15 22 22 H 1.48501 * 109.47118 * 240.00256 * 19 17 15 23 23 C 1.48154 * 104.17972 * 320.44401 * 10 9 7 24 24 C 1.54287 * 110.34475 * 205.00174 * 7 6 5 25 25 C 1.52994 * 110.34571 * 122.25312 * 24 7 6 26 26 C 1.52999 * 110.42622 * 0.04472 * 24 7 6 27 27 O 1.42893 * 109.47358 * 65.50464 * 3 2 1 28 28 C 1.42895 * 114.00200 * 242.74079 * 27 3 2 29 29 H 1.09003 * 109.46776 * 181.82476 * 1 2 3 30 30 H 1.08997 * 109.46839 * 301.82125 * 1 2 3 31 31 H 1.08997 * 109.47090 * 61.82443 * 1 2 3 32 32 H 1.08994 * 109.47285 * 240.00142 * 2 1 3 33 33 H 1.09002 * 109.47101 * 119.99749 * 2 1 3 34 34 H 1.08996 * 109.47054 * 59.99957 * 5 3 2 35 35 H 1.09000 * 109.47254 * 299.99595 * 5 3 2 36 36 H 1.00898 * 110.99956 * 56.04905 * 6 5 3 37 37 H 1.09000 * 110.40669 * 261.52060 * 9 7 6 38 38 H 1.08998 * 110.40317 * 23.83592 * 9 7 6 39 39 H 1.09004 * 109.47311 * 300.00915 * 13 11 10 40 40 H 1.09004 * 109.46741 * 60.00122 * 13 11 10 41 41 H 0.96999 * 120.00061 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.40140 * 280.73118 * 23 10 9 43 43 H 1.08994 * 110.40727 * 158.41649 * 23 10 9 44 44 H 1.09001 * 109.47110 * 176.98797 * 25 24 7 45 45 H 1.08997 * 109.47442 * 296.99501 * 25 24 7 46 46 H 1.09000 * 109.46720 * 56.99310 * 25 24 7 47 47 H 1.08998 * 109.47315 * 302.95555 * 26 24 7 48 48 H 1.09001 * 109.47923 * 62.95699 * 26 24 7 49 49 H 1.09006 * 109.47130 * 182.96017 * 26 24 7 50 50 H 1.09002 * 109.47340 * 53.71783 * 28 27 3 51 51 H 1.09003 * 109.47676 * 173.72010 * 28 27 3 52 52 H 1.09002 * 109.47038 * 293.72320 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5984 1.9840 -0.8366 5 6 3.5638 1.4447 -0.1384 6 7 4.0533 2.8298 -0.1390 7 6 5.5158 2.8711 -0.2712 8 1 5.9643 2.0059 0.2172 9 6 5.9190 2.9185 -1.7607 10 7 7.0973 3.8202 -1.8023 11 6 8.2166 3.6888 -2.5414 12 8 9.0977 4.5183 -2.4603 13 6 8.3735 2.5112 -3.4685 14 16 9.9705 2.6172 -4.3137 15 6 9.8903 1.1613 -5.3029 16 1 9.0205 0.5230 -5.2549 17 6 10.9457 0.8342 -6.1431 18 7 12.0061 1.6118 -6.2013 19 14 10.8610 -0.7097 -7.1913 20 1 9.5725 -1.4055 -6.9446 21 1 10.9562 -0.3395 -8.6263 22 1 11.9867 -1.6110 -6.8368 23 6 6.7630 4.8987 -0.8431 24 6 6.0724 4.1768 0.3338 25 6 7.0875 3.8626 1.4346 26 6 4.9345 5.0350 0.8903 27 8 1.6722 2.0779 1.2259 28 6 0.7927 3.1921 1.0621 29 1 -0.3633 -1.0272 0.0327 30 1 -0.3633 0.5418 0.8732 31 1 -0.3633 0.4852 -0.9059 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8444 0.9601 -1.0735 35 1 4.0054 0.9033 0.6983 36 1 3.7507 3.3206 0.6890 37 1 6.1899 1.9232 -2.1130 38 1 5.1058 3.3254 -2.3618 39 1 8.3281 1.5868 -2.8927 40 1 7.5706 2.5198 -4.2057 41 1 12.7437 1.3830 -6.7881 42 1 6.0824 5.6167 -1.3007 43 1 7.6695 5.3991 -0.5028 44 1 7.5106 4.7924 1.8148 45 1 6.5907 3.3308 2.2460 46 1 7.8845 3.2406 1.0269 47 1 4.2135 5.2398 0.0990 48 1 4.4407 4.5016 1.7026 49 1 5.3387 5.9751 1.2658 50 1 -0.0791 2.8851 0.4844 51 1 0.4725 3.5494 2.0409 52 1 1.3138 3.9920 0.5360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755753282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:16 Heat of formation + Delta-G solvation = -104.388477 kcal Electronic energy + Delta-G solvation = -28799.791568 eV Core-core repulsion = 24924.599505 eV Total energy + Delta-G solvation = -3875.192063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43832 -39.81680 -39.11428 -35.83255 -34.77145 -34.59850 -33.97977 -31.15073 -30.32519 -28.75632 -27.96462 -27.75654 -26.84844 -26.74026 -24.21260 -22.84453 -21.97808 -20.83065 -20.04936 -19.41081 -18.12209 -17.80657 -17.21124 -16.95584 -16.89965 -16.63255 -16.29339 -15.99359 -15.71561 -15.49947 -15.20839 -14.83161 -14.72473 -14.49069 -14.48291 -14.10151 -13.87218 -13.74191 -13.55481 -13.31719 -13.17707 -13.14652 -12.94366 -12.90599 -12.72892 -12.62969 -12.55209 -12.34407 -12.16932 -12.00302 -11.82033 -11.79418 -11.67694 -11.55335 -11.48409 -11.17098 -11.00536 -10.36862 -10.30215 -9.83638 -9.40184 -8.69804 -8.35985 -6.14881 1.21505 1.40950 1.43330 1.53342 1.56088 2.02383 2.25666 2.93005 2.98178 3.05891 3.21716 3.38884 3.51427 3.82662 3.84564 4.00930 4.13610 4.18559 4.20223 4.25915 4.28652 4.32580 4.41240 4.43910 4.56520 4.59290 4.63939 4.65339 4.68176 4.72708 4.75906 4.78429 4.87117 4.89681 4.91974 4.95313 5.03825 5.05589 5.10003 5.14276 5.18772 5.22965 5.28474 5.40537 5.42691 5.46270 6.01778 6.18754 6.35795 6.40266 6.47038 7.05058 7.08395 8.73642 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.002491 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.970662 B =11239.900181 C =13263.031641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.094 3.906 4 H 0.075 0.925 5 C 0.047 3.953 6 N -0.675 5.675 7 C 0.089 3.911 8 H 0.057 0.943 9 C 0.108 3.892 10 N -0.621 5.621 11 C 0.553 3.447 12 O -0.567 6.567 13 C -0.119 4.119 14 S -0.149 6.149 15 C -0.544 4.544 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 1.001 2.999 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.273 1.273 23 C 0.113 3.887 24 C -0.072 4.072 25 C -0.137 4.137 26 C -0.132 4.132 27 O -0.400 6.400 28 C 0.027 3.973 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.033 0.967 36 H 0.358 0.642 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.272 0.728 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.045 0.955 51 H 0.090 0.910 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.707 0.338 17.613 32.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.036 3.964 4 H 0.093 0.907 5 C -0.083 4.083 6 N -0.312 5.312 7 C -0.022 4.022 8 H 0.075 0.925 9 C -0.015 4.015 10 N -0.355 5.355 11 C 0.342 3.658 12 O -0.446 6.446 13 C -0.270 4.270 14 S 0.078 5.922 15 C -0.692 4.692 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.010 4.010 24 C -0.073 4.073 25 C -0.195 4.195 26 C -0.189 4.189 27 O -0.319 6.319 28 C -0.069 4.069 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.182 0.818 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.064 0.936 51 H 0.109 0.891 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -26.223 1.623 17.132 31.365 hybrid contribution -0.187 -1.826 -0.225 1.849 sum -26.410 -0.203 16.907 31.358 Atomic orbital electron populations 1.21714 0.95029 1.02101 1.01769 1.21843 0.96949 0.95706 1.02846 1.22218 0.93318 0.93726 0.87104 0.90679 1.22391 0.94705 0.89831 1.01337 1.60635 1.08369 1.14892 1.47258 1.22315 0.88660 0.96961 0.94262 0.92518 1.22675 0.86758 0.94351 0.97678 1.48880 1.16943 1.27454 1.42253 1.19680 0.80291 0.86078 0.79787 1.90685 1.41654 1.44845 1.67391 1.23282 1.03430 0.99501 1.00759 1.85585 1.19144 1.35451 1.52015 1.23203 1.07491 1.10038 1.28457 0.89976 1.26152 0.93848 1.01389 0.97810 1.70189 1.07310 1.39167 1.38109 0.84883 0.78922 0.76666 0.77330 1.17971 1.19851 1.19865 1.22570 0.99599 0.90060 0.88739 1.21598 0.96504 0.94980 0.94259 1.21871 0.97961 1.02004 0.97637 1.21739 0.96595 0.99192 1.01410 1.87850 1.66827 1.46571 1.30678 1.22964 0.92809 0.88175 1.02976 0.92221 0.92827 0.92488 0.90125 0.91862 0.89659 0.94900 0.81754 0.90337 0.88817 0.87834 0.87697 0.91945 0.89755 0.91765 0.91603 0.91026 0.94612 0.90628 0.91043 0.91311 0.93616 0.89105 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.83 71.98 0.71 -0.78 16 2 C -0.14 -1.50 5.64 30.60 0.17 -1.33 16 3 C 0.09 1.12 2.50 30.60 0.08 1.20 16 4 H 0.08 0.86 7.60 -2.39 -0.02 0.85 16 5 C 0.05 0.62 5.27 86.30 0.45 1.07 16 6 N -0.67 -9.15 5.65 -486.86 -2.75 -11.90 16 7 C 0.09 1.53 3.04 45.82 0.14 1.67 16 8 H 0.06 1.06 7.39 -2.38 -0.02 1.04 16 9 C 0.11 2.33 6.63 86.48 0.57 2.90 16 10 N -0.62 -18.26 3.33 -807.20 -2.69 -20.94 16 11 C 0.55 22.35 7.94 87.66 0.70 23.05 16 12 O -0.57 -28.07 16.13 -3.04 -0.05 -28.12 16 13 C -0.12 -5.01 5.15 71.23 0.37 -4.65 16 14 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 15 C -0.54 -31.52 9.50 67.95 0.65 -30.87 16 16 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.73 5.49 84.86 0.47 1.20 16 18 N -0.91 -56.52 13.22 21.65 0.29 -56.24 16 19 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.11 2.69 6.13 86.53 0.53 3.22 16 24 C -0.07 -1.23 1.03 -51.28 -0.05 -1.28 16 25 C -0.14 -2.46 8.24 71.98 0.59 -1.87 16 26 C -0.13 -1.51 7.08 71.98 0.51 -1.00 16 27 O -0.40 -5.29 9.20 -148.98 -1.37 -6.66 16 28 C 0.03 0.24 10.70 113.37 1.21 1.45 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.58 7.75 -2.39 -0.02 0.56 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.03 0.49 8.07 -2.39 -0.02 0.47 16 36 H 0.36 4.41 4.95 -89.70 -0.44 3.97 16 37 H 0.08 1.69 7.33 -2.39 -0.02 1.67 16 38 H 0.09 1.87 8.06 -2.39 -0.02 1.85 16 39 H 0.10 4.01 7.96 -2.39 -0.02 3.99 16 40 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.08 1.79 7.86 -2.39 -0.02 1.77 16 43 H 0.06 1.79 7.60 -2.39 -0.02 1.77 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 48 H 0.07 0.67 6.89 -2.39 -0.02 0.65 16 49 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 50 H 0.05 0.35 8.10 -2.39 -0.02 0.33 16 51 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -75.77 424.19 1.82 -73.95 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.43 Total: 19.68 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 7.09 Total: -6.01 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -5.15 Total: -89.08 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.42 Total: -34.78 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -75.77 1.82 -73.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755753282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.437 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds