Wall clock time and date at job start Wed Apr 1 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.49049 * 2 1 4 4 C 1.53241 * 109.48992 * 239.91896 * 2 1 3 5 5 H 1.08997 * 109.63238 * 66.49925 * 4 2 1 6 6 C 1.53003 * 109.62977 * 305.91604 * 4 2 1 7 7 N 1.47077 * 108.51708 * 186.20996 * 4 2 1 8 8 C 1.34777 * 120.88256 * 231.16361 * 7 4 2 9 9 O 1.21723 * 120.00072 * 355.03260 * 8 7 4 10 10 C 1.46254 * 120.00172 * 175.03527 * 8 7 4 11 11 C 1.35022 * 119.99834 * 185.19054 * 10 8 7 12 12 C 1.46963 * 119.99889 * 179.97438 * 11 10 8 13 13 C 1.40023 * 120.10307 * 359.72767 * 12 11 10 14 14 C 1.37593 * 119.89763 * 179.75837 * 13 12 11 15 15 C 1.39180 * 120.10282 * 0.49529 * 14 13 12 16 16 O 1.35574 * 119.89699 * 179.73708 * 15 14 13 17 17 C 1.34783 * 116.99606 * 185.59718 * 16 15 14 18 18 H 1.07997 * 120.00246 * 354.93728 * 17 16 15 19 19 C 1.38714 * 119.99640 * 174.94457 * 17 16 15 20 20 N 1.31506 * 120.00466 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99814 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47387 * 90.00011 * 21 19 17 23 23 H 1.48505 * 109.46968 * 209.99503 * 21 19 17 24 24 H 1.48504 * 109.47042 * 329.99478 * 21 19 17 25 25 C 1.39174 * 120.20179 * 359.75728 * 15 14 13 26 26 C 1.37594 * 120.10080 * 0.02562 * 25 15 14 27 27 C 1.47077 * 118.24143 * 51.18588 * 7 4 2 28 28 C 1.53240 * 108.51779 * 308.81502 * 27 7 4 29 29 N 1.46895 * 109.34252 * 53.83168 * 28 27 7 30 30 C 1.46895 * 111.00444 * 172.75018 * 29 28 27 31 31 H 1.08996 * 109.47140 * 299.94611 * 1 2 3 32 32 H 1.09004 * 109.46824 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46906 * 59.94869 * 1 2 3 34 34 H 1.09002 * 109.46772 * 60.00310 * 6 4 2 35 35 H 1.08998 * 109.46923 * 180.02562 * 6 4 2 36 36 H 1.08991 * 109.47188 * 300.00396 * 6 4 2 37 37 H 1.07998 * 120.00254 * 5.19233 * 10 8 7 38 38 H 1.08006 * 120.00545 * 0.02562 * 11 10 8 39 39 H 1.08001 * 120.04744 * 359.97315 * 13 12 11 40 40 H 1.08008 * 119.94843 * 180.23037 * 14 13 12 41 41 H 0.96998 * 120.00464 * 180.02562 * 20 19 17 42 42 H 1.08001 * 119.94901 * 179.97438 * 25 15 14 43 43 H 1.08001 * 120.05085 * 179.97438 * 26 25 15 44 44 H 1.09003 * 109.63451 * 189.10762 * 27 7 4 45 45 H 1.08999 * 109.79206 * 68.61730 * 27 7 4 46 46 H 1.08996 * 109.49450 * 293.86397 * 28 27 7 47 47 H 1.09005 * 109.49112 * 173.79150 * 28 27 7 48 48 H 1.09000 * 109.47733 * 184.30412 * 30 29 28 49 49 H 1.09003 * 109.46935 * 304.29646 * 30 29 28 50 50 H 1.08998 * 109.47539 * 64.29126 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7241 -1.2500 5 1 1.7776 -0.1509 -2.1388 6 6 1.4160 -2.1182 -1.3284 7 7 3.5042 -0.8435 -1.1552 8 6 4.2977 -0.4500 -2.1710 9 8 3.8043 -0.0734 -3.2181 10 6 5.7517 -0.4756 -2.0154 11 6 6.5439 0.0162 -2.9920 12 6 8.0050 -0.0090 -2.8354 13 6 8.5776 -0.5372 -1.6719 14 6 9.9461 -0.5632 -1.5318 15 6 10.7608 -0.0562 -2.5399 16 8 12.1086 -0.0791 -2.3953 17 6 12.8370 0.5303 -3.3517 18 1 12.3493 0.9359 -4.2257 19 6 14.2132 0.6362 -3.2134 20 7 14.8071 0.1426 -2.1490 21 14 15.2229 1.4800 -4.5393 22 1 15.3301 2.9291 -4.2329 23 1 16.5813 0.8816 -4.5830 24 1 14.5601 1.3000 -5.8560 25 6 10.1960 0.4746 -3.6959 26 6 8.8286 0.5008 -3.8466 27 6 4.0782 -1.4041 0.0774 28 6 3.4867 -0.6533 1.2752 29 7 2.0203 -0.6935 1.1986 30 6 1.4140 -0.1352 2.4146 31 1 -0.3633 0.5130 0.8904 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5146 -0.8895 34 1 0.3310 -2.0272 -1.3812 35 1 1.7817 -2.6310 -2.2180 36 1 1.6899 -2.6897 -0.4417 37 1 6.1918 -0.8878 -1.1194 38 1 6.1040 0.4288 -3.8879 39 1 7.9461 -0.9268 -0.8871 40 1 10.3888 -0.9739 -0.6363 41 1 15.7693 0.2170 -2.0521 42 1 10.8320 0.8674 -4.4754 43 1 8.3912 0.9133 -4.7438 44 1 5.1612 -1.2805 0.0664 45 1 3.8314 -2.4632 0.1511 46 1 3.8236 0.3832 1.2572 47 1 3.8158 -1.1270 2.2001 48 1 0.3309 -0.2468 2.3649 49 1 1.7942 -0.6667 3.2871 50 1 1.6672 0.9219 2.4945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492385585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:16 Heat of formation + Delta-G solvation = -3.851735 kcal Electronic energy + Delta-G solvation = -29282.879518 eV Core-core repulsion = 25276.603103 eV Total energy + Delta-G solvation = -4006.276414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.60126 -39.21825 -38.44944 -36.88554 -34.97137 -33.95941 -33.06976 -32.27108 -30.44632 -29.55949 -28.80802 -28.04754 -26.48096 -25.69243 -24.09733 -23.11093 -22.70092 -22.09433 -20.71096 -19.27441 -18.50319 -18.01593 -17.51144 -17.03610 -16.41689 -15.90128 -15.56128 -15.14785 -14.93050 -14.79885 -14.68545 -14.39944 -14.20552 -13.84191 -13.64982 -13.52835 -13.29115 -13.03041 -12.92833 -12.68673 -12.57975 -12.51329 -12.14525 -11.96891 -11.90016 -11.79571 -11.77124 -11.66379 -11.30940 -11.21531 -11.13479 -11.07241 -10.84839 -10.68051 -10.54639 -9.66406 -9.59864 -9.51253 -8.96418 -8.85858 -8.50868 -8.39533 -7.12276 -6.66120 -4.20988 1.06494 2.12305 2.54609 2.90042 3.03309 3.04117 3.08816 3.47696 3.59021 3.81418 4.36288 4.49980 4.55297 4.60522 4.77872 4.84206 4.91158 4.96549 4.98471 5.04533 5.12559 5.16382 5.18517 5.24304 5.27419 5.35720 5.41624 5.45056 5.52043 5.56732 5.60233 5.63324 5.65715 5.71028 5.75859 5.93475 6.00106 6.11163 6.12556 6.33000 6.45612 6.54512 6.59536 6.66914 6.68345 6.78111 6.91067 7.11895 7.22593 7.26848 7.45656 7.62700 7.79200 8.31047 8.78683 9.45508 10.50478 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.001792 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.303835 B =15624.808326 C =16276.347080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 H 0.044 0.956 4 C 0.149 3.851 5 H 0.099 0.901 6 C -0.153 4.153 7 N -0.613 5.613 8 C 0.559 3.441 9 O -0.559 6.559 10 C -0.285 4.285 11 C 0.039 3.961 12 C -0.198 4.198 13 C -0.043 4.043 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.265 1.265 25 C -0.242 4.242 26 C -0.035 4.035 27 C 0.110 3.890 28 C 0.039 3.961 29 N -0.535 5.535 30 C 0.022 3.978 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.868 -1.662 6.828 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 H 0.062 0.938 4 C 0.045 3.955 5 H 0.116 0.884 6 C -0.211 4.211 7 N -0.346 5.346 8 C 0.353 3.647 9 O -0.440 6.440 10 C -0.306 4.306 11 C 0.019 3.981 12 C -0.199 4.199 13 C -0.061 4.061 14 C -0.218 4.218 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.189 1.189 25 C -0.261 4.261 26 C -0.053 4.053 27 C -0.013 4.013 28 C -0.090 4.090 29 N -0.260 5.260 30 C -0.126 4.126 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.058 0.942 47 H 0.106 0.894 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -23.816 -2.077 6.516 24.779 hybrid contribution 0.845 1.263 -0.395 1.571 sum -22.971 -0.814 6.121 23.786 Atomic orbital electron populations 1.21991 0.93557 1.03103 1.02092 1.22013 0.95820 0.95544 0.90296 0.93805 1.21179 0.79484 0.97408 0.97440 0.88350 1.22048 1.00412 0.96284 1.02376 1.48065 1.06133 1.63725 1.16690 1.18413 0.87671 0.76103 0.82467 1.90759 1.76726 1.49204 1.27271 1.22516 0.91505 1.13580 1.02980 1.22297 0.91885 0.88040 0.95873 1.18460 0.91460 1.12230 0.97797 1.20852 0.93616 0.95853 0.95779 1.20145 0.92422 1.09513 0.99765 1.19612 0.84802 0.91824 0.92728 1.83905 1.11901 1.64128 1.46377 1.21474 0.89049 1.36227 1.00101 0.88537 1.25394 0.96014 0.96949 0.98117 1.70009 1.11058 1.40851 1.26531 0.85647 0.78836 0.79114 0.79533 1.19633 1.20044 1.18947 1.21100 0.95043 1.09878 1.00102 1.20989 0.92919 0.94754 0.96650 1.21872 0.98819 0.97926 0.82666 1.22525 0.87589 0.99756 0.99086 1.61965 1.06376 1.55434 1.02249 1.22433 1.00589 0.97449 0.92176 0.92176 0.90980 0.91830 0.91622 0.92831 0.91262 0.85664 0.85998 0.86551 0.86119 0.91590 0.85115 0.86820 0.88657 0.90674 0.94177 0.89396 0.90812 0.91311 0.95732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.21 37.16 0.31 -0.68 16 2 C 0.07 0.63 2.31 -67.58 -0.16 0.48 16 3 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 4 C 0.15 1.56 2.81 -67.49 -0.19 1.37 16 5 H 0.10 1.20 7.09 -51.93 -0.37 0.84 16 6 C -0.15 -1.39 8.69 37.16 0.32 -1.07 16 7 N -0.61 -7.17 2.70 -166.61 -0.45 -7.62 16 8 C 0.56 8.26 7.62 -13.04 -0.10 8.16 16 9 O -0.56 -10.04 15.72 5.17 0.08 -9.96 16 10 C -0.29 -4.00 8.75 -37.51 -0.33 -4.32 16 11 C 0.04 0.60 9.45 -37.19 -0.35 0.25 16 12 C -0.20 -3.38 5.87 -105.02 -0.62 -4.00 16 13 C -0.04 -0.72 9.40 -39.15 -0.37 -1.09 16 14 C -0.20 -3.95 9.97 -39.47 -0.39 -4.34 16 15 C 0.17 3.81 6.66 -38.88 -0.26 3.56 16 16 O -0.16 -4.38 9.74 0.72 0.01 -4.38 16 17 C -0.39 -10.41 9.48 30.91 0.29 -10.11 16 18 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.85 -23.76 13.67 55.48 0.76 -23.00 16 21 Si 0.94 19.48 29.55 -169.99 -5.02 14.46 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.24 -4.99 9.14 -39.47 -0.36 -5.36 16 26 C -0.03 -0.62 9.78 -39.15 -0.38 -1.00 16 27 C 0.11 1.00 6.11 -3.60 -0.02 0.97 16 28 C 0.04 0.31 5.62 -3.70 -0.02 0.29 16 29 N -0.54 -4.28 4.23 -234.58 -0.99 -5.28 16 30 C 0.02 0.14 9.01 60.06 0.54 0.68 16 31 H 0.06 0.35 6.32 -51.93 -0.33 0.02 16 32 H 0.07 0.46 6.35 -51.93 -0.33 0.13 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.49 6.36 -51.93 -0.33 0.16 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.63 7.07 -51.93 -0.37 0.26 16 37 H 0.13 1.50 3.89 -52.49 -0.20 1.30 16 38 H 0.12 1.88 7.53 -52.48 -0.40 1.48 16 39 H 0.12 1.59 6.16 -52.49 -0.32 1.27 16 40 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.13 2.67 5.62 -52.49 -0.29 2.38 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.10 0.80 5.37 -51.93 -0.28 0.52 16 45 H 0.08 0.64 7.62 -51.93 -0.40 0.24 16 46 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 48 H 0.07 0.41 6.21 -51.93 -0.32 0.09 16 49 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 50 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -30.69 393.35 -9.02 -39.70 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.14 Total: 5.38 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.18 Total: -15.23 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.68 Total: -35.90 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.09 Total: -14.34 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.69 -9.02 -39.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492385585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.851 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds