Wall clock time and date at job start Wed Apr 1 2020 02:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.49049 * 2 1 4 4 C 1.53241 * 109.48992 * 239.91896 * 2 1 3 5 5 H 1.08997 * 109.63238 * 66.49925 * 4 2 1 6 6 C 1.53003 * 109.62977 * 305.91604 * 4 2 1 7 7 N 1.47077 * 108.51708 * 186.20996 * 4 2 1 8 8 C 1.34777 * 120.88256 * 231.16361 * 7 4 2 9 9 O 1.21723 * 120.00072 * 355.03260 * 8 7 4 10 10 C 1.46254 * 120.00172 * 175.03527 * 8 7 4 11 11 C 1.35022 * 119.99834 * 185.19054 * 10 8 7 12 12 C 1.46963 * 119.99889 * 179.97438 * 11 10 8 13 13 C 1.40023 * 120.10307 * 359.72767 * 12 11 10 14 14 C 1.37593 * 119.89763 * 179.75837 * 13 12 11 15 15 C 1.39180 * 120.10282 * 0.49529 * 14 13 12 16 16 O 1.35574 * 119.89699 * 179.73708 * 15 14 13 17 17 C 1.34783 * 116.99606 * 185.59718 * 16 15 14 18 18 H 1.07997 * 120.00246 * 354.93728 * 17 16 15 19 19 C 1.38714 * 119.99640 * 174.94457 * 17 16 15 20 20 N 1.31506 * 120.00466 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99814 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47387 * 90.00011 * 21 19 17 23 23 H 1.48505 * 109.46968 * 209.99503 * 21 19 17 24 24 H 1.48504 * 109.47042 * 329.99478 * 21 19 17 25 25 C 1.39174 * 120.20179 * 359.75728 * 15 14 13 26 26 C 1.37594 * 120.10080 * 0.02562 * 25 15 14 27 27 C 1.47077 * 118.24143 * 51.18588 * 7 4 2 28 28 C 1.53240 * 108.51779 * 308.81502 * 27 7 4 29 29 N 1.46895 * 109.34252 * 53.83168 * 28 27 7 30 30 C 1.46895 * 111.00444 * 172.75018 * 29 28 27 31 31 H 1.08996 * 109.47140 * 299.94611 * 1 2 3 32 32 H 1.09004 * 109.46824 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46906 * 59.94869 * 1 2 3 34 34 H 1.09002 * 109.46772 * 60.00310 * 6 4 2 35 35 H 1.08998 * 109.46923 * 180.02562 * 6 4 2 36 36 H 1.08991 * 109.47188 * 300.00396 * 6 4 2 37 37 H 1.07998 * 120.00254 * 5.19233 * 10 8 7 38 38 H 1.08006 * 120.00545 * 0.02562 * 11 10 8 39 39 H 1.08001 * 120.04744 * 359.97315 * 13 12 11 40 40 H 1.08008 * 119.94843 * 180.23037 * 14 13 12 41 41 H 0.96998 * 120.00464 * 180.02562 * 20 19 17 42 42 H 1.08001 * 119.94901 * 179.97438 * 25 15 14 43 43 H 1.08001 * 120.05085 * 179.97438 * 26 25 15 44 44 H 1.09003 * 109.63451 * 189.10762 * 27 7 4 45 45 H 1.08999 * 109.79206 * 68.61730 * 27 7 4 46 46 H 1.08996 * 109.49450 * 293.86397 * 28 27 7 47 47 H 1.09005 * 109.49112 * 173.79150 * 28 27 7 48 48 H 1.09000 * 109.47733 * 184.30412 * 30 29 28 49 49 H 1.09003 * 109.46935 * 304.29646 * 30 29 28 50 50 H 1.08998 * 109.47539 * 64.29126 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7241 -1.2500 5 1 1.7776 -0.1509 -2.1388 6 6 1.4160 -2.1182 -1.3284 7 7 3.5042 -0.8435 -1.1552 8 6 4.2977 -0.4500 -2.1710 9 8 3.8043 -0.0734 -3.2181 10 6 5.7517 -0.4756 -2.0154 11 6 6.5439 0.0162 -2.9920 12 6 8.0050 -0.0090 -2.8354 13 6 8.5776 -0.5372 -1.6719 14 6 9.9461 -0.5632 -1.5318 15 6 10.7608 -0.0562 -2.5399 16 8 12.1086 -0.0791 -2.3953 17 6 12.8370 0.5303 -3.3517 18 1 12.3493 0.9359 -4.2257 19 6 14.2132 0.6362 -3.2134 20 7 14.8071 0.1426 -2.1490 21 14 15.2229 1.4800 -4.5393 22 1 15.3301 2.9291 -4.2329 23 1 16.5813 0.8816 -4.5830 24 1 14.5601 1.3000 -5.8560 25 6 10.1960 0.4746 -3.6959 26 6 8.8286 0.5008 -3.8466 27 6 4.0782 -1.4041 0.0774 28 6 3.4867 -0.6533 1.2752 29 7 2.0203 -0.6935 1.1986 30 6 1.4140 -0.1352 2.4146 31 1 -0.3633 0.5130 0.8904 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5146 -0.8895 34 1 0.3310 -2.0272 -1.3812 35 1 1.7817 -2.6310 -2.2180 36 1 1.6899 -2.6897 -0.4417 37 1 6.1918 -0.8878 -1.1194 38 1 6.1040 0.4288 -3.8879 39 1 7.9461 -0.9268 -0.8871 40 1 10.3888 -0.9739 -0.6363 41 1 15.7693 0.2170 -2.0521 42 1 10.8320 0.8674 -4.4754 43 1 8.3912 0.9133 -4.7438 44 1 5.1612 -1.2805 0.0664 45 1 3.8314 -2.4632 0.1511 46 1 3.8236 0.3832 1.2572 47 1 3.8158 -1.1270 2.2001 48 1 0.3309 -0.2468 2.3649 49 1 1.7942 -0.6667 3.2871 50 1 1.6672 0.9219 2.4945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492385585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:15 Heat of formation + Delta-G solvation = -22.077171 kcal Electronic energy + Delta-G solvation = -29283.669832 eV Core-core repulsion = 25276.603103 eV Total energy + Delta-G solvation = -4007.066728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.53253 -40.83123 -39.47159 -38.46886 -35.87244 -34.95050 -34.44333 -33.85334 -31.97935 -30.51469 -29.56021 -29.26353 -27.54011 -27.09098 -25.20446 -24.00315 -23.73648 -23.47085 -21.98420 -20.46543 -19.78792 -19.23110 -18.84882 -18.54425 -17.34493 -16.66278 -16.53507 -16.47195 -16.09663 -16.01647 -15.98243 -15.61632 -15.46912 -15.32454 -14.93284 -14.67850 -14.35132 -14.18842 -14.02309 -13.70520 -13.58396 -13.34016 -13.31827 -13.20743 -12.99400 -12.71568 -12.69307 -12.62052 -12.56239 -12.46516 -12.21935 -12.13258 -12.00126 -11.89678 -11.61080 -11.22161 -11.13071 -10.81948 -10.58717 -9.90177 -9.79929 -9.26084 -8.68774 -8.52628 -6.18627 -0.27424 0.57796 1.11154 1.35619 1.45509 1.52454 1.95807 2.14869 2.30869 2.85176 2.89424 3.16779 3.41389 3.51325 3.75264 3.86118 3.87881 4.02618 4.06952 4.09993 4.15744 4.28079 4.30605 4.39743 4.44785 4.47815 4.51935 4.61045 4.65713 4.65857 4.74580 4.81143 4.89033 4.91537 4.93399 4.99004 5.02681 5.04528 5.11547 5.18608 5.21776 5.29718 5.32491 5.40955 5.53169 5.61926 5.64027 5.79332 5.96838 6.02957 6.04748 6.09164 6.42604 6.91772 7.16328 7.68550 8.69323 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.001792 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.303835 B =15624.808326 C =16276.347080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 H 0.025 0.975 4 C 0.142 3.858 5 H 0.076 0.924 6 C -0.143 4.143 7 N -0.606 5.606 8 C 0.549 3.451 9 O -0.596 6.596 10 C -0.250 4.250 11 C 0.019 3.981 12 C -0.171 4.171 13 C -0.036 4.036 14 C -0.205 4.205 15 C 0.131 3.869 16 O -0.218 6.218 17 C -0.417 4.417 18 H 0.105 0.895 19 C -0.018 4.018 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.249 4.249 26 C -0.040 4.040 27 C 0.103 3.897 28 C 0.040 3.960 29 N -0.537 5.537 30 C 0.022 3.978 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.153 0.847 38 H 0.123 0.877 39 H 0.159 0.841 40 H 0.125 0.875 41 H 0.275 0.725 42 H 0.125 0.875 43 H 0.143 0.857 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.028 0.972 47 H 0.110 0.890 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.425 -2.064 7.712 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 H 0.043 0.957 4 C 0.039 3.961 5 H 0.094 0.906 6 C -0.201 4.201 7 N -0.338 5.338 8 C 0.343 3.657 9 O -0.479 6.479 10 C -0.270 4.270 11 C -0.001 4.001 12 C -0.172 4.172 13 C -0.054 4.054 14 C -0.224 4.224 15 C 0.078 3.922 16 O -0.123 6.123 17 C -0.492 4.492 18 H 0.123 0.877 19 C -0.217 4.217 20 N -0.549 5.549 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.176 1.176 25 C -0.268 4.268 26 C -0.058 4.058 27 C -0.019 4.019 28 C -0.088 4.088 29 N -0.262 5.262 30 C -0.126 4.126 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.170 0.830 38 H 0.141 0.859 39 H 0.176 0.824 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.047 0.953 47 H 0.128 0.872 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -27.467 -2.494 7.431 28.564 hybrid contribution 1.267 1.304 -0.540 1.897 sum -26.200 -1.190 6.891 27.117 Atomic orbital electron populations 1.21970 0.91823 1.03723 1.02776 1.21922 0.97153 0.94165 0.89916 0.95708 1.21303 0.78880 0.98297 0.97613 0.90602 1.21966 1.01377 0.94949 1.01794 1.48200 1.06698 1.62138 1.16742 1.18597 0.88194 0.76257 0.82669 1.90753 1.77345 1.50926 1.28924 1.22814 0.91222 1.10150 1.02864 1.22179 0.90745 0.90207 0.96942 1.18756 0.92363 1.09110 0.96969 1.21252 0.92667 0.94775 0.96693 1.20419 0.93535 1.09158 0.99337 1.20190 0.84247 0.93232 0.94490 1.83886 1.13645 1.67161 1.47649 1.21889 0.89772 1.36919 1.00654 0.87740 1.26599 0.96952 0.97600 1.00565 1.70141 1.11300 1.44207 1.29295 0.84592 0.76966 0.77981 0.76758 1.18810 1.19533 1.17632 1.21196 0.96329 1.09861 0.99415 1.21306 0.91749 0.94590 0.98146 1.22142 0.99408 0.98641 0.81665 1.22552 0.87654 0.99145 0.99484 1.62005 1.06427 1.55276 1.02498 1.22491 1.01180 0.97234 0.91688 0.91033 0.90304 0.91720 0.89876 0.94294 0.90760 0.82974 0.85938 0.82352 0.85744 0.91578 0.85754 0.83916 0.87675 0.89404 0.95322 0.87155 0.89834 0.90134 0.96202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.21 71.99 0.59 -0.95 16 2 C 0.08 1.19 2.31 45.00 0.10 1.29 16 3 H 0.02 0.47 8.14 -2.39 -0.02 0.46 16 4 C 0.14 2.73 2.81 44.96 0.13 2.85 16 5 H 0.08 1.81 7.09 -2.39 -0.02 1.79 16 6 C -0.14 -2.25 8.69 71.98 0.63 -1.62 16 7 N -0.61 -12.64 2.70 -799.25 -2.16 -14.80 16 8 C 0.55 14.92 7.62 86.33 0.66 15.58 16 9 O -0.60 -20.70 15.72 -4.42 -0.07 -20.77 16 10 C -0.25 -6.08 8.75 23.61 0.21 -5.88 16 11 C 0.02 0.53 9.45 23.82 0.23 0.76 16 12 C -0.17 -5.36 5.87 -20.12 -0.12 -5.48 16 13 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16 14 C -0.21 -8.09 9.97 22.34 0.22 -7.86 16 15 C 0.13 6.19 6.66 22.72 0.15 6.34 16 16 O -0.22 -12.58 9.74 -20.33 -0.20 -12.78 16 17 C -0.42 -23.37 9.48 67.93 0.64 -22.72 16 18 H 0.11 5.36 5.18 -2.91 -0.02 5.35 16 19 C -0.02 -1.00 5.49 84.86 0.47 -0.54 16 20 N -0.91 -54.11 13.67 21.62 0.30 -53.81 16 21 Si 1.02 41.43 29.55 68.60 2.03 43.46 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 25 C -0.25 -10.43 9.14 22.34 0.20 -10.23 16 26 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 27 C 0.10 1.47 6.11 86.35 0.53 2.00 16 28 C 0.04 0.50 5.62 86.38 0.49 0.99 16 29 N -0.54 -6.87 4.23 -896.08 -3.79 -10.66 16 30 C 0.02 0.20 9.01 127.69 1.15 1.35 16 31 H 0.07 0.61 6.32 -2.39 -0.02 0.60 16 32 H 0.08 0.75 6.35 -2.39 -0.02 0.73 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 1.02 6.36 -2.39 -0.02 1.00 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 1.11 7.07 -2.39 -0.02 1.09 16 37 H 0.15 2.83 3.89 -2.91 -0.01 2.82 16 38 H 0.12 3.48 7.53 -2.91 -0.02 3.46 16 39 H 0.16 3.52 6.16 -2.91 -0.02 3.50 16 40 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.12 5.28 5.62 -2.91 -0.02 5.26 16 43 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 44 H 0.11 1.27 5.37 -2.39 -0.01 1.25 16 45 H 0.09 1.11 7.62 -2.39 -0.02 1.09 16 46 H 0.03 0.43 8.14 -2.39 -0.02 0.42 16 47 H 0.11 0.93 8.06 -2.38 -0.02 0.91 16 48 H 0.08 0.63 6.21 -2.39 -0.01 0.62 16 49 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 50 H 0.02 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -72.30 393.35 3.77 -68.54 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.96 Total: 27.00 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 6.70 Total: -26.17 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -5.66 Total: -79.28 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.27 Total: -33.55 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -72.30 3.77 -68.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492385585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.461 kcal (2) G-P(sol) polarization free energy of solvation -72.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds