Wall clock time and date at job start Wed Apr 1 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.48802 * 2 1 4 4 C 1.53233 * 109.49161 * 239.94987 * 2 1 3 5 5 H 1.09000 * 109.63142 * 305.91558 * 4 2 1 6 6 C 1.52997 * 109.63056 * 66.30496 * 4 2 1 7 7 N 1.47086 * 108.51802 * 186.21105 * 4 2 1 8 8 C 1.34782 * 120.87781 * 231.15986 * 7 4 2 9 9 O 1.21726 * 119.99850 * 4.84821 * 8 7 4 10 10 C 1.46250 * 119.99897 * 184.84069 * 8 7 4 11 11 C 1.35028 * 120.00121 * 185.55118 * 10 8 7 12 12 C 1.46955 * 120.00001 * 180.02562 * 11 10 8 13 13 C 1.40027 * 120.10015 * 359.72500 * 12 11 10 14 14 C 1.37607 * 119.89416 * 179.69662 * 13 12 11 15 15 C 1.39181 * 120.09999 * 0.60352 * 14 13 12 16 16 O 1.35571 * 119.89302 * 179.69294 * 15 14 13 17 17 C 1.34787 * 116.99337 * 174.47436 * 16 15 14 18 18 H 1.07993 * 120.00220 * 5.09029 * 17 16 15 19 19 C 1.38722 * 119.99673 * 185.08777 * 17 16 15 20 20 N 1.31508 * 119.99886 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47041 * 89.99602 * 21 19 17 23 23 H 1.48499 * 109.46640 * 209.99745 * 21 19 17 24 24 H 1.48500 * 109.46780 * 329.99465 * 21 19 17 25 25 C 1.39171 * 120.20255 * 359.67221 * 15 14 13 26 26 C 1.37598 * 120.10146 * 0.02562 * 25 15 14 27 27 C 1.47078 * 118.23973 * 51.18121 * 7 4 2 28 28 C 1.53239 * 108.52168 * 308.81759 * 27 7 4 29 29 N 1.46896 * 109.49365 * 120.08010 * 2 1 3 30 30 C 1.46906 * 111.00267 * 307.21657 * 29 2 1 31 31 H 1.09006 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47428 * 60.05524 * 1 2 3 33 33 H 1.09001 * 109.47473 * 300.04974 * 1 2 3 34 34 H 1.08997 * 109.47131 * 64.29789 * 6 4 2 35 35 H 1.09006 * 109.47053 * 184.29456 * 6 4 2 36 36 H 1.08993 * 109.47170 * 304.29293 * 6 4 2 37 37 H 1.08005 * 120.00283 * 5.55683 * 10 8 7 38 38 H 1.07996 * 119.99715 * 0.02562 * 11 10 8 39 39 H 1.07995 * 120.05385 * 0.02562 * 13 12 11 40 40 H 1.08003 * 119.94564 * 180.27349 * 14 13 12 41 41 H 0.96998 * 119.99754 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.94790 * 180.02562 * 25 15 14 43 43 H 1.08004 * 120.04477 * 179.97438 * 26 25 15 44 44 H 1.08995 * 109.62660 * 68.53125 * 27 7 4 45 45 H 1.09005 * 109.62733 * 189.10514 * 27 7 4 46 46 H 1.08999 * 109.49184 * 173.79088 * 28 27 7 47 47 H 1.09003 * 109.49030 * 293.84442 * 28 27 7 48 48 H 1.08995 * 109.46828 * 59.99933 * 30 29 2 49 49 H 1.08999 * 109.47061 * 180.02562 * 30 29 2 50 50 H 1.09004 * 109.46501 * 299.99906 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2504 5 1 1.5957 -1.7165 -1.3067 6 6 1.6668 0.0794 -2.4978 7 7 3.5042 -0.8428 -1.1555 8 6 4.2977 -0.4488 -2.1713 9 8 3.8128 0.0939 -3.1471 10 6 5.7411 -0.6732 -2.1010 11 6 6.5488 -0.1799 -3.0642 12 6 7.9992 -0.4059 -2.9938 13 6 8.5465 -1.1274 -1.9258 14 6 9.9045 -1.3418 -1.8674 15 6 10.7350 -0.8320 -2.8611 16 8 12.0730 -1.0405 -2.7961 17 6 12.8091 -0.6216 -3.8447 18 1 12.3411 -0.0717 -4.6477 19 6 14.1679 -0.8969 -3.8923 20 7 14.7379 -1.5661 -2.9142 21 14 15.1882 -0.3158 -5.3452 22 1 15.7253 1.0394 -5.0624 23 1 16.3142 -1.2581 -5.5677 24 1 14.3361 -0.2670 -6.5605 25 6 10.1961 -0.1094 -3.9214 26 6 8.8386 0.1047 -3.9913 27 6 4.0782 -1.4040 0.0769 28 6 3.4866 -0.6538 1.2750 29 7 2.0202 -0.6941 1.1983 30 6 1.4139 -0.1365 2.4147 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5130 -0.8905 33 1 -0.3634 0.5146 0.8895 34 1 2.1805 1.0406 -2.4790 35 1 1.9640 -0.4739 -3.3887 36 1 0.5894 0.2434 -2.5145 37 1 6.1612 -1.2334 -1.2787 38 1 6.1288 0.3806 -3.8862 39 1 7.9033 -1.5196 -1.1520 40 1 10.3270 -1.9020 -1.0464 41 1 15.6879 -1.7590 -2.9477 42 1 10.8443 0.2840 -4.6905 43 1 8.4214 0.6660 -4.8144 44 1 3.8285 -2.4626 0.1480 45 1 5.1611 -1.2804 0.0658 46 1 3.8157 -1.1281 2.1996 47 1 3.8238 0.3826 1.2577 48 1 0.3308 -0.2480 2.3647 49 1 1.7945 -0.6681 3.2868 50 1 1.6671 0.9207 2.4950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492385586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:19 Heat of formation + Delta-G solvation = 8.056589 kcal Electronic energy + Delta-G solvation = -29321.277762 eV Core-core repulsion = 25315.517731 eV Total energy + Delta-G solvation = -4005.760031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.69254 -39.20977 -38.40796 -36.90231 -34.87609 -34.22746 -33.03779 -32.26713 -30.44389 -29.49053 -28.95171 -27.86695 -26.34601 -25.68832 -24.18981 -22.97246 -22.28007 -22.09351 -20.82322 -19.89708 -18.67163 -17.94166 -17.22200 -17.01861 -16.35301 -15.97800 -15.55981 -15.22342 -14.99937 -14.84966 -14.64039 -14.32294 -14.11665 -13.83567 -13.55263 -13.40991 -13.31826 -13.01707 -12.90449 -12.72152 -12.59106 -12.47296 -12.16134 -12.02970 -11.87562 -11.79431 -11.73544 -11.66871 -11.37139 -11.16542 -11.13401 -11.08414 -11.03330 -10.65994 -10.54074 -9.59508 -9.50173 -9.04977 -8.91479 -8.85894 -8.49936 -8.39366 -7.12050 -6.65992 -4.20879 1.06822 2.12346 2.54878 2.89443 3.03155 3.04224 3.09057 3.47241 3.58566 3.81536 4.38906 4.49997 4.53912 4.59637 4.78678 4.88778 4.91838 4.95143 5.01115 5.03821 5.12642 5.14824 5.18050 5.27879 5.30643 5.35243 5.43009 5.46785 5.52583 5.58504 5.62329 5.65135 5.66863 5.70154 5.86099 6.00053 6.07471 6.11318 6.20547 6.44858 6.47901 6.55297 6.59992 6.66400 6.70782 6.78296 6.91156 7.12040 7.22799 7.27061 7.46890 7.62893 7.79350 8.34099 8.78816 9.45680 10.50609 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.001798 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.553353 B =15573.245447 C =16406.030412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.045 0.955 4 C 0.156 3.844 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.615 5.615 8 C 0.558 3.442 9 O -0.550 6.550 10 C -0.286 4.286 11 C 0.038 3.962 12 C -0.198 4.198 13 C -0.043 4.043 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.265 1.265 25 C -0.242 4.242 26 C -0.035 4.035 27 C 0.112 3.888 28 C 0.039 3.961 29 N -0.539 5.539 30 C 0.022 3.978 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.039 0.961 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.542 1.819 7.429 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.039 4.039 3 H 0.063 0.937 4 C 0.052 3.948 5 H 0.093 0.907 6 C -0.193 4.193 7 N -0.349 5.349 8 C 0.353 3.647 9 O -0.431 6.431 10 C -0.307 4.307 11 C 0.019 3.981 12 C -0.199 4.199 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.189 1.189 25 C -0.261 4.261 26 C -0.053 4.053 27 C -0.012 4.012 28 C -0.089 4.089 29 N -0.264 5.264 30 C -0.126 4.126 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.058 0.942 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -23.500 1.408 7.127 24.597 hybrid contribution 0.858 1.068 -0.378 1.421 sum -22.642 2.476 6.749 23.756 Atomic orbital electron populations 1.21947 0.93570 1.02869 1.02216 1.22095 0.95846 0.95828 0.90164 0.93712 1.21302 0.79517 0.99371 0.94598 0.90740 1.22225 0.98864 1.01628 0.96631 1.48038 1.06211 1.63888 1.16740 1.18388 0.87310 0.77302 0.81734 1.90813 1.75570 1.43681 1.33074 1.22578 0.91947 1.11907 1.04265 1.22283 0.91710 0.89647 0.94507 1.18461 0.91757 1.09995 0.99721 1.20861 0.93775 0.95393 0.96096 1.20153 0.92467 1.07908 1.01325 1.19610 0.84815 0.91623 0.92928 1.83906 1.12483 1.68644 1.41292 1.21475 0.90333 1.35927 0.99129 0.88540 1.25398 0.96143 0.96134 0.98799 1.70012 1.12321 1.35223 1.30892 0.85647 0.79148 0.78708 0.79631 1.19643 1.20037 1.18943 1.21101 0.95401 1.07540 1.02085 1.20986 0.92829 0.95419 0.96107 1.21876 0.98831 0.97892 0.82553 1.22522 0.87569 0.99717 0.99118 1.61973 1.06429 1.55620 1.02406 1.22432 1.00606 0.97440 0.92134 0.91519 0.91473 0.92179 0.91342 0.90404 0.93800 0.85811 0.85997 0.86544 0.86125 0.91595 0.85126 0.86837 0.90685 0.88589 0.89344 0.94236 0.90790 0.91288 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.50 37.16 0.32 -0.71 16 2 C 0.07 0.63 2.06 -67.60 -0.14 0.49 16 3 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.16 1.65 3.10 -67.49 -0.21 1.44 16 5 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.14 -1.55 7.48 37.16 0.28 -1.27 16 7 N -0.62 -7.18 3.01 -166.61 -0.50 -7.68 16 8 C 0.56 7.96 7.53 -13.04 -0.10 7.86 16 9 O -0.55 -9.12 11.77 5.17 0.06 -9.06 16 10 C -0.29 -3.94 8.63 -37.51 -0.32 -4.27 16 11 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 12 C -0.20 -3.36 5.87 -105.03 -0.62 -3.97 16 13 C -0.04 -0.73 9.40 -39.14 -0.37 -1.09 16 14 C -0.20 -3.95 9.97 -39.46 -0.39 -4.34 16 15 C 0.17 3.81 6.66 -38.88 -0.26 3.55 16 16 O -0.16 -4.39 9.74 0.72 0.01 -4.38 16 17 C -0.39 -10.41 9.48 30.91 0.29 -10.12 16 18 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.76 13.67 55.48 0.76 -23.00 16 21 Si 0.94 19.48 29.55 -169.99 -5.02 14.45 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.24 -4.99 9.14 -39.47 -0.36 -5.35 16 26 C -0.03 -0.62 9.78 -39.15 -0.38 -1.00 16 27 C 0.11 1.02 6.45 -3.60 -0.02 1.00 16 28 C 0.04 0.32 5.62 -3.70 -0.02 0.30 16 29 N -0.54 -4.56 4.73 -234.59 -1.11 -5.67 16 30 C 0.02 0.14 9.01 60.07 0.54 0.69 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.44 6.54 -51.93 -0.34 0.10 16 33 H 0.06 0.36 6.33 -51.93 -0.33 0.03 16 34 H 0.07 0.91 6.88 -51.93 -0.36 0.56 16 35 H 0.08 1.04 6.69 -51.93 -0.35 0.69 16 36 H 0.04 0.40 6.45 -51.93 -0.33 0.06 16 37 H 0.12 1.48 4.11 -52.48 -0.22 1.27 16 38 H 0.12 1.83 7.53 -52.49 -0.40 1.44 16 39 H 0.12 1.59 6.16 -52.49 -0.32 1.27 16 40 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 43 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.81 5.53 -51.93 -0.29 0.52 16 46 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 47 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.43 6.21 -51.93 -0.32 0.11 16 49 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 50 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -30.06 390.08 -9.32 -39.37 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.17 Total: 5.68 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -2.22 Total: -15.59 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.85 Total: -36.35 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.07 Total: -13.44 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.06 -9.32 -39.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492385586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.431 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds