Wall clock time and date at job start Wed Apr 1 2020 02:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.48802 * 2 1 4 4 C 1.53233 * 109.49161 * 239.94987 * 2 1 3 5 5 H 1.09000 * 109.63142 * 305.91558 * 4 2 1 6 6 C 1.52997 * 109.63056 * 66.30496 * 4 2 1 7 7 N 1.47086 * 108.51802 * 186.21105 * 4 2 1 8 8 C 1.34782 * 120.87781 * 231.15986 * 7 4 2 9 9 O 1.21726 * 119.99850 * 4.84821 * 8 7 4 10 10 C 1.46250 * 119.99897 * 184.84069 * 8 7 4 11 11 C 1.35028 * 120.00121 * 185.55118 * 10 8 7 12 12 C 1.46955 * 120.00001 * 180.02562 * 11 10 8 13 13 C 1.40027 * 120.10015 * 359.72500 * 12 11 10 14 14 C 1.37607 * 119.89416 * 179.69662 * 13 12 11 15 15 C 1.39181 * 120.09999 * 0.60352 * 14 13 12 16 16 O 1.35571 * 119.89302 * 179.69294 * 15 14 13 17 17 C 1.34787 * 116.99337 * 174.47436 * 16 15 14 18 18 H 1.07993 * 120.00220 * 5.09029 * 17 16 15 19 19 C 1.38722 * 119.99673 * 185.08777 * 17 16 15 20 20 N 1.31508 * 119.99886 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47041 * 89.99602 * 21 19 17 23 23 H 1.48499 * 109.46640 * 209.99745 * 21 19 17 24 24 H 1.48500 * 109.46780 * 329.99465 * 21 19 17 25 25 C 1.39171 * 120.20255 * 359.67221 * 15 14 13 26 26 C 1.37598 * 120.10146 * 0.02562 * 25 15 14 27 27 C 1.47078 * 118.23973 * 51.18121 * 7 4 2 28 28 C 1.53239 * 108.52168 * 308.81759 * 27 7 4 29 29 N 1.46896 * 109.49365 * 120.08010 * 2 1 3 30 30 C 1.46906 * 111.00267 * 307.21657 * 29 2 1 31 31 H 1.09006 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47428 * 60.05524 * 1 2 3 33 33 H 1.09001 * 109.47473 * 300.04974 * 1 2 3 34 34 H 1.08997 * 109.47131 * 64.29789 * 6 4 2 35 35 H 1.09006 * 109.47053 * 184.29456 * 6 4 2 36 36 H 1.08993 * 109.47170 * 304.29293 * 6 4 2 37 37 H 1.08005 * 120.00283 * 5.55683 * 10 8 7 38 38 H 1.07996 * 119.99715 * 0.02562 * 11 10 8 39 39 H 1.07995 * 120.05385 * 0.02562 * 13 12 11 40 40 H 1.08003 * 119.94564 * 180.27349 * 14 13 12 41 41 H 0.96998 * 119.99754 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.94790 * 180.02562 * 25 15 14 43 43 H 1.08004 * 120.04477 * 179.97438 * 26 25 15 44 44 H 1.08995 * 109.62660 * 68.53125 * 27 7 4 45 45 H 1.09005 * 109.62733 * 189.10514 * 27 7 4 46 46 H 1.08999 * 109.49184 * 173.79088 * 28 27 7 47 47 H 1.09003 * 109.49030 * 293.84442 * 28 27 7 48 48 H 1.08995 * 109.46828 * 59.99933 * 30 29 2 49 49 H 1.08999 * 109.47061 * 180.02562 * 30 29 2 50 50 H 1.09004 * 109.46501 * 299.99906 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2504 5 1 1.5957 -1.7165 -1.3067 6 6 1.6668 0.0794 -2.4978 7 7 3.5042 -0.8428 -1.1555 8 6 4.2977 -0.4488 -2.1713 9 8 3.8128 0.0939 -3.1471 10 6 5.7411 -0.6732 -2.1010 11 6 6.5488 -0.1799 -3.0642 12 6 7.9992 -0.4059 -2.9938 13 6 8.5465 -1.1274 -1.9258 14 6 9.9045 -1.3418 -1.8674 15 6 10.7350 -0.8320 -2.8611 16 8 12.0730 -1.0405 -2.7961 17 6 12.8091 -0.6216 -3.8447 18 1 12.3411 -0.0717 -4.6477 19 6 14.1679 -0.8969 -3.8923 20 7 14.7379 -1.5661 -2.9142 21 14 15.1882 -0.3158 -5.3452 22 1 15.7253 1.0394 -5.0624 23 1 16.3142 -1.2581 -5.5677 24 1 14.3361 -0.2670 -6.5605 25 6 10.1961 -0.1094 -3.9214 26 6 8.8386 0.1047 -3.9913 27 6 4.0782 -1.4040 0.0769 28 6 3.4866 -0.6538 1.2750 29 7 2.0202 -0.6941 1.1983 30 6 1.4139 -0.1365 2.4147 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5130 -0.8905 33 1 -0.3634 0.5146 0.8895 34 1 2.1805 1.0406 -2.4790 35 1 1.9640 -0.4739 -3.3887 36 1 0.5894 0.2434 -2.5145 37 1 6.1612 -1.2334 -1.2787 38 1 6.1288 0.3806 -3.8862 39 1 7.9033 -1.5196 -1.1520 40 1 10.3270 -1.9020 -1.0464 41 1 15.6879 -1.7590 -2.9477 42 1 10.8443 0.2840 -4.6905 43 1 8.4214 0.6660 -4.8144 44 1 3.8285 -2.4626 0.1480 45 1 5.1611 -1.2804 0.0658 46 1 3.8157 -1.1281 2.1996 47 1 3.8238 0.3826 1.2577 48 1 0.3308 -0.2480 2.3647 49 1 1.7945 -0.6681 3.2868 50 1 1.6671 0.9207 2.4950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492385586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:18 Heat of formation + Delta-G solvation = -9.960874 kcal Electronic energy + Delta-G solvation = -29322.059058 eV Core-core repulsion = 25315.517731 eV Total energy + Delta-G solvation = -4006.541326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.63751 -40.82644 -39.35518 -38.47258 -35.77838 -35.18939 -34.49177 -33.81947 -31.97352 -30.50487 -29.64546 -29.14209 -27.50696 -27.00602 -25.25796 -24.08101 -23.56983 -23.12086 -21.93632 -20.95505 -20.11838 -19.30590 -18.80531 -18.17785 -17.27631 -16.79669 -16.47841 -16.44428 -16.37233 -16.00374 -15.82898 -15.61880 -15.45701 -15.25422 -14.83537 -14.62189 -14.32079 -14.10764 -14.02785 -13.70577 -13.59310 -13.47405 -13.31464 -13.28114 -12.98882 -12.88334 -12.70898 -12.59105 -12.55073 -12.48996 -12.19997 -12.13150 -12.08203 -11.84162 -11.80524 -11.21688 -11.10440 -10.56202 -10.14341 -9.89704 -9.72332 -9.28554 -8.67955 -8.52414 -6.18468 -0.25178 0.58066 1.13178 1.35635 1.45587 1.52715 1.97171 2.15030 2.34712 2.85099 2.86983 3.17425 3.41821 3.53464 3.74492 3.85948 3.90156 4.01743 4.07685 4.12209 4.17428 4.27590 4.30456 4.35176 4.45243 4.47936 4.48660 4.59930 4.64550 4.66618 4.74591 4.75801 4.90231 4.92273 4.94125 4.96777 5.03173 5.07698 5.12836 5.18988 5.19143 5.31312 5.33495 5.42410 5.56081 5.63150 5.66334 5.80716 5.97105 6.02162 6.02700 6.09866 6.46128 6.91975 7.23382 7.68941 8.69550 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.001798 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.553353 B =15573.245447 C =16406.030412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.075 3.925 3 H 0.027 0.973 4 C 0.152 3.848 5 H 0.081 0.919 6 C -0.126 4.126 7 N -0.611 5.611 8 C 0.548 3.452 9 O -0.577 6.577 10 C -0.251 4.251 11 C 0.018 3.982 12 C -0.170 4.170 13 C -0.037 4.037 14 C -0.206 4.206 15 C 0.130 3.870 16 O -0.219 6.219 17 C -0.417 4.417 18 H 0.105 0.895 19 C -0.018 4.018 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.249 4.249 26 C -0.040 4.040 27 C 0.105 3.895 28 C 0.040 3.960 29 N -0.544 5.544 30 C 0.022 3.978 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.159 0.841 40 H 0.124 0.876 41 H 0.275 0.725 42 H 0.125 0.875 43 H 0.143 0.857 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.028 0.972 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.227 1.875 8.253 28.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.045 0.955 4 C 0.049 3.951 5 H 0.099 0.901 6 C -0.184 4.184 7 N -0.343 5.343 8 C 0.342 3.658 9 O -0.460 6.460 10 C -0.271 4.271 11 C -0.002 4.002 12 C -0.171 4.171 13 C -0.055 4.055 14 C -0.225 4.225 15 C 0.078 3.922 16 O -0.124 6.124 17 C -0.492 4.492 18 H 0.123 0.877 19 C -0.217 4.217 20 N -0.550 5.550 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.177 1.177 25 C -0.268 4.268 26 C -0.058 4.058 27 C -0.017 4.017 28 C -0.088 4.088 29 N -0.269 5.269 30 C -0.126 4.126 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.167 0.833 38 H 0.142 0.858 39 H 0.176 0.824 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.128 0.872 47 H 0.046 0.954 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -27.276 1.468 7.983 28.458 hybrid contribution 1.310 1.063 -0.468 1.751 sum -25.965 2.531 7.514 27.149 Atomic orbital electron populations 1.21924 0.91879 1.03367 1.02980 1.22003 0.97139 0.94483 0.89797 0.95533 1.21421 0.78935 0.99732 0.95060 0.90078 1.22055 1.00059 1.00091 0.96196 1.48164 1.06714 1.62621 1.16830 1.18541 0.87705 0.77525 0.82069 1.90829 1.76055 1.44792 1.34321 1.22884 0.91773 1.08983 1.03498 1.22161 0.90522 0.91663 0.95842 1.18772 0.92708 1.07169 0.98475 1.21258 0.92836 0.94497 0.96887 1.20425 0.93551 1.07742 1.00784 1.20186 0.84317 0.92966 0.94747 1.83887 1.14259 1.71820 1.42441 1.21890 0.91052 1.36569 0.99732 0.87742 1.26605 0.97127 0.96214 1.01783 1.70145 1.12648 1.38523 1.33658 0.84590 0.77288 0.78322 0.76084 1.18772 1.19546 1.17653 1.21199 0.96710 1.07415 1.01488 1.21306 0.91634 0.95521 0.97369 1.22129 0.99401 0.98568 0.81603 1.22549 0.87560 0.99111 0.99595 1.62017 1.06579 1.55576 1.02764 1.22489 1.01167 0.97271 0.91644 0.91071 0.91159 0.91068 0.93634 0.92606 0.91489 0.83345 0.85780 0.82410 0.85820 0.91590 0.85777 0.83886 0.89449 0.87639 0.87199 0.95414 0.89853 0.90141 0.96113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.50 71.98 0.61 -0.96 16 2 C 0.08 1.17 2.06 44.99 0.09 1.26 16 3 H 0.03 0.51 8.14 -2.39 -0.02 0.50 16 4 C 0.15 2.85 3.10 44.96 0.14 2.99 16 5 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.13 -2.70 7.48 71.98 0.54 -2.16 16 7 N -0.61 -12.51 3.01 -799.24 -2.41 -14.91 16 8 C 0.55 14.18 7.53 86.32 0.65 14.83 16 9 O -0.58 -18.27 11.77 -4.43 -0.05 -18.32 16 10 C -0.25 -5.95 8.63 23.61 0.20 -5.75 16 11 C 0.02 0.49 9.45 23.82 0.23 0.71 16 12 C -0.17 -5.30 5.87 -20.13 -0.12 -5.42 16 13 C -0.04 -1.15 9.40 22.55 0.21 -0.94 16 14 C -0.21 -8.14 9.97 22.35 0.22 -7.91 16 15 C 0.13 6.17 6.66 22.72 0.15 6.32 16 16 O -0.22 -12.64 9.74 -20.34 -0.20 -12.84 16 17 C -0.42 -23.40 9.48 67.94 0.64 -22.76 16 18 H 0.11 5.37 5.18 -2.91 -0.02 5.35 16 19 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 20 N -0.91 -54.21 13.67 21.62 0.30 -53.91 16 21 Si 1.02 41.46 29.55 68.60 2.03 43.49 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 24 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 25 C -0.25 -10.43 9.14 22.34 0.20 -10.23 16 26 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 27 C 0.11 1.51 6.45 86.35 0.56 2.07 16 28 C 0.04 0.53 5.62 86.38 0.49 1.01 16 29 N -0.54 -7.46 4.73 -896.10 -4.24 -11.70 16 30 C 0.02 0.22 9.01 127.69 1.15 1.37 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 0.73 6.54 -2.39 -0.02 0.71 16 33 H 0.07 0.64 6.33 -2.39 -0.02 0.62 16 34 H 0.04 1.18 6.88 -2.39 -0.02 1.16 16 35 H 0.05 1.44 6.69 -2.38 -0.02 1.42 16 36 H 0.07 1.08 6.45 -2.39 -0.02 1.07 16 37 H 0.15 2.75 4.11 -2.91 -0.01 2.74 16 38 H 0.12 3.40 7.53 -2.91 -0.02 3.38 16 39 H 0.16 3.53 6.16 -2.91 -0.02 3.51 16 40 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 41 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.12 5.26 5.62 -2.91 -0.02 5.25 16 43 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.11 1.29 5.53 -2.38 -0.01 1.27 16 46 H 0.11 0.99 8.06 -2.39 -0.02 0.97 16 47 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.08 0.69 6.21 -2.39 -0.01 0.67 16 49 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 50 H 0.02 0.23 8.14 -2.38 -0.02 0.21 16 Total: -1.00 -70.86 390.08 3.05 -67.81 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.96 Total: 27.65 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 6.66 Total: -27.26 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -6.35 Total: -80.52 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.25 Total: -31.16 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -70.86 3.05 -67.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492385586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.853 kcal (2) G-P(sol) polarization free energy of solvation -70.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds