Wall clock time and date at job start Wed Apr 1 2020 03:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.34905 * 2 1 4 4 C 1.53998 * 110.30518 * 237.86251 * 2 1 3 5 5 N 1.47906 * 107.05599 * 242.30686 * 4 2 1 6 6 C 1.46898 * 111.00035 * 214.16192 * 5 4 2 7 7 C 1.52999 * 109.46726 * 301.65432 * 6 5 4 8 8 C 1.53002 * 109.47199 * 185.12733 * 7 6 5 9 9 S 1.81000 * 109.47369 * 180.02562 * 8 7 6 10 10 C 1.76203 * 100.00125 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99671 * 0.02562 * 10 9 8 12 12 C 1.38794 * 119.99855 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00132 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99644 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47040 * 60.00678 * 14 12 10 16 16 H 1.48503 * 109.46792 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47282 * 300.00222 * 14 12 10 18 18 C 1.48539 * 105.81680 * 334.67162 * 5 4 2 19 19 C 1.54594 * 110.30577 * 122.14614 * 2 1 3 20 20 H 1.08993 * 110.87949 * 22.44575 * 19 2 1 21 21 N 1.46498 * 110.72308 * 259.22610 * 19 2 1 22 22 C 1.34770 * 119.99992 * 160.04824 * 21 19 2 23 23 O 1.21513 * 120.00220 * 359.97438 * 22 21 19 24 24 O 1.34639 * 120.00090 * 180.02562 * 22 21 19 25 25 C 1.45206 * 116.99975 * 179.97438 * 24 22 21 26 26 C 1.53000 * 109.46925 * 59.99997 * 25 24 22 27 27 C 1.53001 * 109.47078 * 299.99446 * 25 24 22 28 28 C 1.53001 * 109.46935 * 179.97438 * 25 24 22 29 29 H 1.08999 * 109.46757 * 297.85244 * 1 2 3 30 30 H 1.08995 * 109.47256 * 57.85601 * 1 2 3 31 31 H 1.09001 * 109.47156 * 177.85669 * 1 2 3 32 32 H 1.09000 * 109.91453 * 122.95577 * 4 2 1 33 33 H 1.08998 * 110.08616 * 1.75042 * 4 2 1 34 34 H 1.08990 * 109.47444 * 61.65372 * 6 5 4 35 35 H 1.08993 * 109.46996 * 181.65738 * 6 5 4 36 36 H 1.09000 * 109.47291 * 305.12277 * 7 6 5 37 37 H 1.08998 * 109.47353 * 65.12464 * 7 6 5 38 38 H 1.09000 * 109.46627 * 299.99950 * 8 7 6 39 39 H 1.08998 * 109.47187 * 59.99630 * 8 7 6 40 40 H 0.97007 * 119.99733 * 180.02562 * 13 12 10 41 41 H 1.08994 * 110.66765 * 280.77056 * 18 5 4 42 42 H 1.09007 * 110.80639 * 157.70892 * 18 5 4 43 43 H 0.97001 * 120.00166 * 340.05319 * 21 19 2 44 44 H 1.09000 * 109.47001 * 299.99545 * 26 25 24 45 45 H 1.09002 * 109.46907 * 180.02562 * 26 25 24 46 46 H 1.08991 * 109.47265 * 60.00248 * 26 25 24 47 47 H 1.09002 * 109.47116 * 179.97438 * 27 25 24 48 48 H 1.08998 * 109.47348 * 300.00328 * 27 25 24 49 49 H 1.09000 * 109.46673 * 60.00568 * 27 25 24 50 50 H 1.09004 * 109.47331 * 300.00144 * 28 25 24 51 51 H 1.09001 * 109.47556 * 59.99936 * 28 25 24 52 52 H 1.09002 * 109.46916 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2230 5 7 2.8313 -1.9236 -0.7084 6 6 3.9752 -2.2261 -1.5790 7 6 3.4749 -2.5181 -2.9951 8 6 4.6502 -2.9574 -3.8707 9 16 4.0586 -3.3020 -5.5462 10 6 5.5730 -3.7712 -6.3151 11 1 6.4892 -3.7784 -5.7434 12 6 5.5882 -4.1324 -7.6551 13 7 4.4714 -4.1241 -8.3517 14 14 7.1937 -4.6305 -8.4699 15 1 7.7561 -5.8148 -7.7727 16 1 6.9423 -4.9671 -9.8943 17 1 8.1591 -3.5048 -8.3908 18 6 3.2855 -1.5348 0.6514 19 6 2.0666 -0.7714 1.2276 20 1 1.3186 -1.4683 1.6057 21 7 2.4867 0.1569 2.2802 22 6 2.6010 -0.2737 3.5521 23 8 2.3552 -1.4318 3.8260 24 8 2.9866 0.5796 4.5196 25 6 3.0877 0.0468 5.8666 26 6 4.1108 -1.0905 5.8897 27 6 1.7230 -0.4857 6.3082 28 6 3.5363 1.1552 6.8211 29 1 -0.3633 0.4801 0.9086 30 1 -0.3633 0.5467 -0.8701 31 1 -0.3633 -1.0270 -0.0384 32 1 2.7162 -0.1224 -1.8114 33 1 1.2348 -1.1174 -1.8376 34 1 4.6508 -1.3712 -1.6014 35 1 4.5044 -3.0976 -1.1938 36 1 2.7304 -3.3134 -2.9607 37 1 3.0258 -1.6179 -3.4146 38 1 5.3947 -2.1620 -3.9052 39 1 5.0993 -3.8576 -3.4512 40 1 4.4821 -4.3770 -9.2882 41 1 4.1563 -0.8818 0.5940 42 1 3.5065 -2.4167 1.2527 43 1 2.6825 1.0814 2.0617 44 1 3.7916 -1.8803 5.2097 45 1 4.1864 -1.4908 6.9008 46 1 5.0830 -0.7112 5.5752 47 1 1.7989 -0.8860 7.3191 48 1 0.9941 0.3246 6.2916 49 1 1.4038 -1.2755 5.6281 50 1 4.5087 1.5343 6.5064 51 1 2.8078 1.9658 6.8047 52 1 3.6117 0.7554 7.8323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495858324.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:31 Heat of formation + Delta-G solvation = -97.719361 kcal Electronic energy + Delta-G solvation = -27955.941867 eV Core-core repulsion = 24081.038999 eV Total energy + Delta-G solvation = -3874.902869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14858 -39.69150 -37.45179 -35.44527 -34.50342 -33.33830 -32.42461 -31.92817 -28.65291 -27.80052 -27.73763 -26.68013 -25.64521 -24.72599 -22.80850 -21.69473 -21.18640 -20.49696 -19.83586 -18.38041 -17.43489 -17.17393 -16.43315 -16.30923 -15.90855 -15.08331 -14.81244 -14.79319 -14.65581 -14.31634 -14.26847 -14.07409 -13.78942 -13.74166 -13.21300 -12.90669 -12.83425 -12.75519 -12.58457 -12.28604 -12.27440 -12.22651 -12.01431 -11.79540 -11.71380 -11.58310 -11.45623 -11.24726 -11.12422 -11.03641 -10.90528 -10.78934 -10.71361 -10.61484 -10.36309 -10.33793 -9.60668 -9.39917 -9.03859 -8.48693 -8.29038 -6.51089 -6.21308 -3.91460 1.81774 2.54367 3.22410 3.24131 3.28617 3.53195 3.71182 4.04061 4.22500 4.25262 4.32792 4.34504 4.38658 4.51683 4.58374 4.95765 5.07572 5.07864 5.14518 5.14703 5.15533 5.20245 5.24524 5.30307 5.32687 5.38682 5.41609 5.48244 5.51345 5.54859 5.59634 5.62344 5.69639 5.72890 5.77482 5.85895 5.88728 5.90405 5.92720 5.99914 6.09286 6.14532 6.21193 6.33414 6.59147 6.72902 6.82725 6.99411 7.09636 7.61601 8.08591 8.37800 9.24851 10.86791 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.001652 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.922441 B =16946.451884 C =17763.668242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.081 0.919 4 C 0.039 3.961 5 N -0.511 5.511 6 C 0.052 3.948 7 C -0.095 4.095 8 C -0.113 4.113 9 S -0.131 6.131 10 C -0.517 4.517 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.023 3.977 19 C 0.163 3.837 20 H 0.108 0.892 21 N -0.703 5.703 22 C 0.650 3.350 23 O -0.563 6.563 24 O -0.367 6.367 25 C 0.137 3.863 26 C -0.184 4.184 27 C -0.184 4.184 28 C -0.141 4.141 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.268 0.732 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.405 0.595 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.730 12.911 29.326 32.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.099 0.901 4 C -0.089 4.089 5 N -0.235 5.235 6 C -0.077 4.077 7 C -0.134 4.134 8 C -0.262 4.262 9 S 0.097 5.903 10 C -0.665 4.665 11 H 0.090 0.910 12 C -0.137 4.137 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.106 4.106 19 C 0.059 3.941 20 H 0.126 0.874 21 N -0.362 5.362 22 C 0.403 3.597 23 O -0.452 6.452 24 O -0.282 6.282 25 C 0.100 3.900 26 C -0.241 4.241 27 C -0.241 4.241 28 C -0.198 4.198 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.240 0.760 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.107 0.893 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.286 11.889 28.933 32.118 hybrid contribution 3.016 0.739 -0.178 3.110 sum -4.269 12.628 28.755 31.695 Atomic orbital electron populations 1.21835 0.93377 1.02846 1.01904 1.22284 0.97359 0.99262 0.93819 0.90097 1.22996 0.98821 0.91279 0.95823 1.64792 1.21736 1.35398 1.01568 1.22379 0.91319 1.00463 0.93549 1.21293 0.98015 1.02191 0.91861 1.23232 0.99884 1.02269 1.00820 1.84610 1.16879 1.87905 1.00928 1.22655 0.93699 1.52315 0.97877 0.91044 1.25006 0.97430 0.95030 0.96283 1.70014 1.26181 1.45433 1.08901 0.86233 0.82148 0.79075 0.78125 1.19932 1.20805 1.19987 1.23626 0.96116 0.99741 0.91116 1.21987 0.96550 0.90352 0.85200 0.87370 1.44795 1.72212 1.14708 1.04513 1.18098 0.76526 0.83309 0.81719 1.90923 1.54820 1.17464 1.81962 1.86299 1.81328 1.42272 1.18266 1.22077 0.96514 0.94357 0.77062 1.22521 0.98406 0.99284 1.03930 1.22519 0.95664 1.02886 1.03006 1.21867 1.02373 0.97789 0.97782 0.92654 0.91921 0.91598 0.92978 0.89233 0.94808 0.90495 0.90581 0.91734 0.92407 0.92061 0.92270 0.93453 0.89311 0.76028 0.89259 0.91105 0.92162 0.91112 0.92217 0.89285 0.91459 0.91500 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.89 37.16 0.33 -0.72 16 2 C -0.11 -0.87 3.32 -89.26 -0.30 -1.17 16 3 H 0.08 0.54 7.72 -51.93 -0.40 0.14 16 4 C 0.04 0.41 5.13 -2.75 -0.01 0.39 16 5 N -0.51 -6.19 5.35 -230.45 -1.23 -7.43 16 6 C 0.05 0.71 4.82 -3.83 -0.02 0.69 16 7 C -0.09 -1.55 4.97 -26.73 -0.13 -1.68 16 8 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 9 S -0.13 -3.46 21.44 -107.50 -2.30 -5.76 16 10 C -0.52 -14.95 9.50 30.94 0.29 -14.66 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 13 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 14 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.02 0.25 6.24 -1.89 -0.01 0.24 16 19 C 0.16 1.51 2.89 -66.07 -0.19 1.32 16 20 H 0.11 1.17 7.42 -51.93 -0.39 0.79 16 21 N -0.70 -5.92 5.21 -56.91 -0.30 -6.22 16 22 C 0.65 6.79 8.05 54.05 0.44 7.23 16 23 O -0.56 -7.18 11.61 -19.28 -0.22 -7.41 16 24 O -0.37 -3.46 9.94 -40.32 -0.40 -3.86 16 25 C 0.14 1.07 1.13 -90.62 -0.10 0.97 16 26 C -0.18 -1.47 8.37 37.16 0.31 -1.16 16 27 C -0.18 -1.40 8.37 37.16 0.31 -1.09 16 28 C -0.14 -0.75 8.85 37.16 0.33 -0.42 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.56 7.44 -51.93 -0.39 0.17 16 33 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 34 H 0.03 0.44 8.00 -51.93 -0.42 0.03 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.04 7.14 -51.93 -0.37 0.67 16 38 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 39 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.05 0.50 7.94 -51.93 -0.41 0.09 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.40 2.56 8.44 -40.82 -0.34 2.21 16 44 H 0.09 0.93 5.88 -51.93 -0.31 0.63 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 0.89 5.88 -51.93 -0.31 0.59 16 50 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 52 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 421.14 15.07 6.35 6.35 Total: -1.00 -32.39 421.14 -10.66 -43.05 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -9.61 Total: 0.20 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 1.36 Total: -10.18 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.80 Total: -39.01 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.62 Total: -11.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.30 Total: -5.76 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.39 -10.66 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495858324.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.670 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds