Wall clock time and date at job start Wed Apr 1 2020 03:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47208 * 2 1 4 4 N 1.46895 * 109.47478 * 240.00144 * 2 1 3 5 5 C 1.46904 * 111.00199 * 89.33795 * 4 2 1 6 6 H 1.09002 * 110.43541 * 331.73732 * 5 4 2 7 7 C 1.54648 * 110.48871 * 94.43577 * 5 4 2 8 8 C 1.54048 * 101.73750 * 143.51162 * 7 5 4 9 9 H 1.09003 * 111.37135 * 95.16617 * 8 7 5 10 10 C 1.53124 * 109.85595 * 217.97249 * 8 7 5 11 11 C 1.53139 * 108.33859 * 169.31289 * 10 8 7 12 12 C 1.52368 * 110.28586 * 295.18089 * 11 10 8 13 13 C 1.52292 * 111.65360 * 58.96131 * 12 11 10 14 14 N 1.46670 * 110.77181 * 317.43750 * 13 12 11 15 15 C 1.34751 * 124.89719 * 219.87815 * 14 13 12 16 16 O 1.21281 * 124.82223 * 359.20150 * 15 14 13 17 17 C 1.50703 * 109.47086 * 120.00123 * 2 1 3 18 18 C 1.38298 * 119.93117 * 259.99949 * 17 2 1 19 19 C 1.38098 * 120.07160 * 179.70280 * 18 17 2 20 20 C 1.38881 * 119.92893 * 0.27593 * 19 18 17 21 21 O 1.35752 * 120.07056 * 180.02562 * 20 19 18 22 22 C 1.34826 * 116.99906 * 354.16462 * 21 20 19 23 23 H 1.08006 * 119.99832 * 5.09077 * 22 21 20 24 24 C 1.38658 * 120.00307 * 185.08657 * 22 21 20 25 25 N 1.31552 * 120.00296 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99515 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47392 * 89.99957 * 26 24 22 28 28 H 1.48503 * 109.46827 * 209.99956 * 26 24 22 29 29 H 1.48504 * 109.46959 * 329.99570 * 26 24 22 30 30 C 1.38883 * 119.86136 * 0.02562 * 20 19 18 31 31 C 1.38101 * 119.92753 * 359.97438 * 30 20 19 32 32 H 1.08994 * 109.46921 * 175.01422 * 1 2 3 33 33 H 1.08999 * 109.47149 * 295.01398 * 1 2 3 34 34 H 1.09001 * 109.47027 * 55.01132 * 1 2 3 35 35 H 1.00901 * 110.99732 * 325.38901 * 4 2 1 36 36 H 1.08999 * 110.97450 * 261.61961 * 7 5 4 37 37 H 1.08997 * 110.97557 * 25.40254 * 7 5 4 38 38 H 1.08992 * 109.68772 * 49.59994 * 10 8 7 39 39 H 1.08998 * 109.72007 * 289.04413 * 10 8 7 40 40 H 1.08999 * 109.33528 * 174.93312 * 11 10 8 41 41 H 1.09003 * 109.20177 * 55.34952 * 11 10 8 42 42 H 1.08998 * 109.04608 * 298.39786 * 12 11 10 43 43 H 1.09001 * 109.04466 * 179.51826 * 12 11 10 44 44 H 1.09001 * 109.21960 * 197.11141 * 13 12 11 45 45 H 1.08994 * 109.22147 * 77.77708 * 13 12 11 46 46 H 1.08004 * 119.96731 * 359.97438 * 18 17 2 47 47 H 1.08003 * 120.03797 * 180.29317 * 19 18 17 48 48 H 0.97001 * 120.00096 * 180.02562 * 25 24 22 49 49 H 1.08001 * 120.03023 * 180.02562 * 30 20 19 50 50 H 1.08008 * 119.95891 * 180.02562 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.1803 0.2444 -2.3195 6 1 1.4825 1.0762 -2.2230 7 6 3.6364 0.7608 -2.3888 8 6 3.8628 0.8570 -3.9095 9 1 3.6688 1.8647 -4.2770 10 6 5.2921 0.4266 -4.2508 11 6 5.4000 0.2763 -5.7710 12 6 4.5032 -0.8565 -6.2548 13 6 3.0449 -0.6140 -5.8889 14 7 2.9303 -0.1040 -4.5186 15 6 1.9771 -0.4672 -3.6380 16 8 1.0828 -1.2528 -3.8703 17 6 2.0323 -0.7105 1.2305 18 6 2.4586 0.0211 2.3240 19 6 2.9137 -0.6270 3.4553 20 6 2.9484 -2.0149 3.4921 21 8 3.3948 -2.6550 4.6029 22 6 3.9026 -1.8881 5.5887 23 1 3.8656 -0.8116 5.5090 24 6 4.4724 -2.4814 6.7050 25 7 4.9675 -1.7331 7.6671 26 14 4.5370 -4.3432 6.8425 27 1 5.8003 -4.8405 6.2408 28 1 4.4822 -4.7359 8.2736 29 1 3.3799 -4.9331 6.1226 30 6 2.5256 -2.7466 2.3900 31 6 2.0716 -2.0925 1.2616 32 1 -0.3633 -1.0237 -0.0893 33 1 -0.3633 0.4345 0.9313 34 1 -0.3633 0.5893 -0.8419 35 1 1.4093 -1.4555 -1.4509 36 1 3.7259 1.7399 -1.9183 37 1 4.3253 0.0476 -1.9362 38 1 5.5131 -0.5266 -3.7708 39 1 5.9964 1.1835 -3.9057 40 1 6.4336 0.0581 -6.0396 41 1 5.0928 1.2080 -6.2461 42 1 4.8334 -1.7905 -5.8002 43 1 4.5889 -0.9400 -7.3382 44 1 2.4940 -1.5511 -5.9701 45 1 2.6179 0.1133 -6.5794 46 1 2.4314 1.1004 2.2948 47 1 3.2420 -0.0552 4.3108 48 1 5.3664 -2.1482 8.4478 49 1 2.5511 -3.8260 2.4158 50 1 1.7422 -2.6611 0.4044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834916358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:09 Heat of formation + Delta-G solvation = -37.744451 kcal Electronic energy + Delta-G solvation = -29910.114786 eV Core-core repulsion = 25902.368674 eV Total energy + Delta-G solvation = -4007.746113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16826 -39.26270 -37.90722 -37.45562 -35.92882 -34.37157 -32.69685 -32.33109 -30.86164 -30.18480 -28.23378 -27.67506 -26.63369 -25.29766 -23.50152 -22.73898 -22.09531 -21.78636 -21.04256 -20.00281 -19.35681 -17.80227 -17.38814 -16.89475 -16.76836 -16.10622 -15.30172 -15.10267 -14.91096 -14.61599 -14.54928 -14.18399 -14.03921 -13.78514 -13.73546 -13.61578 -13.56181 -13.35819 -13.07880 -12.78643 -12.63771 -12.46668 -12.36832 -12.23690 -12.09879 -11.81504 -11.49338 -11.43446 -11.31237 -11.12754 -11.09210 -10.96167 -10.70442 -10.56723 -10.55346 -10.10921 -9.94191 -9.34498 -8.99781 -8.83181 -8.54655 -8.18274 -7.24255 -6.38667 -4.04934 2.18699 2.22858 2.32906 2.66703 3.24265 3.28049 3.43070 3.92707 3.98977 4.19382 4.26595 4.38848 4.49370 4.55454 4.57165 4.63053 4.76476 4.86669 4.91352 4.98533 5.05667 5.08557 5.16400 5.22672 5.29412 5.31981 5.37594 5.41894 5.47189 5.59594 5.62040 5.63528 5.64351 5.74869 5.78795 5.87492 5.93072 5.97777 6.16718 6.19787 6.27258 6.39047 6.62391 6.76498 6.81230 6.91099 7.14011 7.27224 7.33228 7.39204 7.66617 7.83892 7.89989 8.07812 8.97157 9.60924 10.69162 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002194 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.404938 B =12761.838198 C =13321.484084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.140 3.860 3 H 0.078 0.922 4 N -0.660 5.660 5 C 0.056 3.944 6 H 0.085 0.915 7 C -0.117 4.117 8 C 0.130 3.870 9 H 0.083 0.917 10 C -0.129 4.129 11 C -0.120 4.120 12 C -0.133 4.133 13 C 0.129 3.871 14 N -0.611 5.611 15 C 0.517 3.483 16 O -0.531 6.531 17 C -0.157 4.157 18 C -0.069 4.069 19 C -0.220 4.220 20 C 0.159 3.841 21 O -0.220 6.220 22 C -0.388 4.388 23 H 0.106 0.894 24 C 0.062 3.938 25 N -0.882 5.882 26 Si 0.905 3.095 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.260 1.260 30 C -0.194 4.194 31 C -0.053 4.053 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.351 0.649 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.107 0.893 47 H 0.132 0.868 48 H 0.279 0.721 49 H 0.114 0.886 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 7.554 -26.881 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.031 3.969 3 H 0.096 0.904 4 N -0.293 5.293 5 C -0.057 4.057 6 H 0.103 0.897 7 C -0.156 4.156 8 C 0.027 3.973 9 H 0.101 0.899 10 C -0.167 4.167 11 C -0.157 4.157 12 C -0.172 4.172 13 C 0.007 3.993 14 N -0.346 5.346 15 C 0.304 3.696 16 O -0.407 6.407 17 C -0.159 4.159 18 C -0.087 4.087 19 C -0.240 4.240 20 C 0.107 3.893 21 O -0.125 6.125 22 C -0.464 4.464 23 H 0.123 0.877 24 C -0.141 4.141 25 N -0.520 5.520 26 Si 0.731 3.269 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.184 1.184 30 C -0.213 4.213 31 C -0.072 4.072 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.172 0.828 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.149 0.851 48 H 0.089 0.911 49 H 0.132 0.868 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.538 6.896 -26.637 27.558 hybrid contribution -0.708 -0.405 -0.030 0.816 sum -2.245 6.491 -26.667 27.537 Atomic orbital electron populations 1.22495 0.96748 1.02314 1.01891 1.20314 0.92201 0.96598 0.87815 0.90354 1.60771 1.55589 1.10598 1.02353 1.22212 0.98310 0.95871 0.89344 0.89748 1.22775 0.96140 1.03286 0.93396 1.21853 0.89639 0.92398 0.93442 0.89915 1.22010 0.95512 1.02919 0.96309 1.21367 0.99899 0.98667 0.95796 1.21556 0.94328 0.99723 1.01545 1.21179 0.97099 0.99874 0.81136 1.48423 1.28983 1.44309 1.12915 1.21036 0.80978 0.81021 0.86526 1.90716 1.33905 1.35239 1.80843 1.19078 1.08370 0.93539 0.94888 1.20572 0.97220 0.98290 0.92664 1.21212 1.08395 0.94309 1.00047 1.19133 0.92555 0.90959 0.86639 1.83574 1.69475 1.36432 1.23037 1.20758 1.37311 0.92082 0.96203 0.87678 1.24459 0.95134 1.00162 0.94301 1.69645 1.37765 1.36105 1.08479 0.86187 0.79704 0.83795 0.77250 1.19919 1.20857 1.18378 1.20213 1.09002 0.99249 0.92833 1.20338 0.97480 0.93486 0.95888 0.92152 0.91542 0.93338 0.82811 0.89357 0.88144 0.90692 0.90207 0.91314 0.91824 0.91402 0.90562 0.89775 0.92027 0.87515 0.85087 0.91126 0.86754 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 9.20 37.16 0.34 -1.67 16 2 C 0.14 1.73 2.63 -68.87 -0.18 1.55 16 3 H 0.08 0.89 7.61 -51.93 -0.40 0.49 16 4 N -0.66 -7.92 5.49 -100.99 -0.55 -8.48 16 5 C 0.06 0.56 3.09 -67.75 -0.21 0.35 16 6 H 0.08 0.77 7.60 -51.93 -0.39 0.38 16 7 C -0.12 -0.95 6.38 -25.32 -0.16 -1.11 16 8 C 0.13 0.91 3.65 -66.99 -0.24 0.66 16 9 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 10 C -0.13 -0.78 5.37 -26.60 -0.14 -0.93 16 11 C -0.12 -0.62 5.81 -26.98 -0.16 -0.78 16 12 C -0.13 -0.77 5.98 -27.42 -0.16 -0.94 16 13 C 0.13 0.99 6.74 -4.31 -0.03 0.96 16 14 N -0.61 -5.58 3.14 -165.05 -0.52 -6.10 16 15 C 0.52 6.09 7.58 -10.75 -0.08 6.01 16 16 O -0.53 -8.10 16.92 5.56 0.09 -8.01 16 17 C -0.16 -2.51 4.96 -104.58 -0.52 -3.03 16 18 C -0.07 -1.20 9.66 -39.61 -0.38 -1.58 16 19 C -0.22 -4.70 9.17 -39.39 -0.36 -5.06 16 20 C 0.16 3.68 6.65 -39.10 -0.26 3.42 16 21 O -0.22 -5.85 8.59 0.05 0.00 -5.85 16 22 C -0.39 -10.97 9.95 30.89 0.31 -10.67 16 23 H 0.11 3.03 5.44 -52.48 -0.29 2.74 16 24 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 25 N -0.88 -25.57 13.96 55.48 0.77 -24.79 16 26 Si 0.90 21.88 28.62 -169.99 -4.86 17.02 16 27 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 30 C -0.19 -3.89 9.99 -39.39 -0.39 -4.28 16 31 C -0.05 -0.91 9.32 -39.61 -0.37 -1.28 16 32 H 0.06 0.72 8.03 -51.93 -0.42 0.31 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.49 7.98 -51.93 -0.41 0.08 16 35 H 0.35 4.55 7.09 -39.29 -0.28 4.28 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.97 7.68 -51.93 -0.40 0.57 16 38 H 0.07 0.56 7.95 -51.93 -0.41 0.15 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.75 7.76 -51.93 -0.40 0.35 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.11 1.58 8.03 -52.48 -0.42 1.16 16 47 H 0.13 2.94 5.64 -52.48 -0.30 2.65 16 48 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 50 H 0.11 1.68 7.37 -52.48 -0.39 1.29 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -31.56 397.48 -10.05 -41.61 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.87 Total: 5.32 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -3.10 Total: -16.71 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.30 Total: -39.37 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.86 Total: 17.02 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.56 -10.05 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834916358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.867 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds