Wall clock time and date at job start Wed Apr 1 2020 03:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47208 * 2 1 4 4 N 1.46895 * 109.47478 * 240.00144 * 2 1 3 5 5 C 1.46904 * 111.00199 * 89.33795 * 4 2 1 6 6 H 1.09002 * 110.43541 * 331.73732 * 5 4 2 7 7 C 1.54648 * 110.48871 * 94.43577 * 5 4 2 8 8 C 1.54048 * 101.73750 * 143.51162 * 7 5 4 9 9 H 1.09003 * 111.37135 * 95.16617 * 8 7 5 10 10 C 1.53124 * 109.85595 * 217.97249 * 8 7 5 11 11 C 1.53139 * 108.33859 * 169.31289 * 10 8 7 12 12 C 1.52368 * 110.28586 * 295.18089 * 11 10 8 13 13 C 1.52292 * 111.65360 * 58.96131 * 12 11 10 14 14 N 1.46670 * 110.77181 * 317.43750 * 13 12 11 15 15 C 1.34751 * 124.89719 * 219.87815 * 14 13 12 16 16 O 1.21281 * 124.82223 * 359.20150 * 15 14 13 17 17 C 1.50703 * 109.47086 * 120.00123 * 2 1 3 18 18 C 1.38298 * 119.93117 * 259.99949 * 17 2 1 19 19 C 1.38098 * 120.07160 * 179.70280 * 18 17 2 20 20 C 1.38881 * 119.92893 * 0.27593 * 19 18 17 21 21 O 1.35752 * 120.07056 * 180.02562 * 20 19 18 22 22 C 1.34826 * 116.99906 * 354.16462 * 21 20 19 23 23 H 1.08006 * 119.99832 * 5.09077 * 22 21 20 24 24 C 1.38658 * 120.00307 * 185.08657 * 22 21 20 25 25 N 1.31552 * 120.00296 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99515 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47392 * 89.99957 * 26 24 22 28 28 H 1.48503 * 109.46827 * 209.99956 * 26 24 22 29 29 H 1.48504 * 109.46959 * 329.99570 * 26 24 22 30 30 C 1.38883 * 119.86136 * 0.02562 * 20 19 18 31 31 C 1.38101 * 119.92753 * 359.97438 * 30 20 19 32 32 H 1.08994 * 109.46921 * 175.01422 * 1 2 3 33 33 H 1.08999 * 109.47149 * 295.01398 * 1 2 3 34 34 H 1.09001 * 109.47027 * 55.01132 * 1 2 3 35 35 H 1.00901 * 110.99732 * 325.38901 * 4 2 1 36 36 H 1.08999 * 110.97450 * 261.61961 * 7 5 4 37 37 H 1.08997 * 110.97557 * 25.40254 * 7 5 4 38 38 H 1.08992 * 109.68772 * 49.59994 * 10 8 7 39 39 H 1.08998 * 109.72007 * 289.04413 * 10 8 7 40 40 H 1.08999 * 109.33528 * 174.93312 * 11 10 8 41 41 H 1.09003 * 109.20177 * 55.34952 * 11 10 8 42 42 H 1.08998 * 109.04608 * 298.39786 * 12 11 10 43 43 H 1.09001 * 109.04466 * 179.51826 * 12 11 10 44 44 H 1.09001 * 109.21960 * 197.11141 * 13 12 11 45 45 H 1.08994 * 109.22147 * 77.77708 * 13 12 11 46 46 H 1.08004 * 119.96731 * 359.97438 * 18 17 2 47 47 H 1.08003 * 120.03797 * 180.29317 * 19 18 17 48 48 H 0.97001 * 120.00096 * 180.02562 * 25 24 22 49 49 H 1.08001 * 120.03023 * 180.02562 * 30 20 19 50 50 H 1.08008 * 119.95891 * 180.02562 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.1803 0.2444 -2.3195 6 1 1.4825 1.0762 -2.2230 7 6 3.6364 0.7608 -2.3888 8 6 3.8628 0.8570 -3.9095 9 1 3.6688 1.8647 -4.2770 10 6 5.2921 0.4266 -4.2508 11 6 5.4000 0.2763 -5.7710 12 6 4.5032 -0.8565 -6.2548 13 6 3.0449 -0.6140 -5.8889 14 7 2.9303 -0.1040 -4.5186 15 6 1.9771 -0.4672 -3.6380 16 8 1.0828 -1.2528 -3.8703 17 6 2.0323 -0.7105 1.2305 18 6 2.4586 0.0211 2.3240 19 6 2.9137 -0.6270 3.4553 20 6 2.9484 -2.0149 3.4921 21 8 3.3948 -2.6550 4.6029 22 6 3.9026 -1.8881 5.5887 23 1 3.8656 -0.8116 5.5090 24 6 4.4724 -2.4814 6.7050 25 7 4.9675 -1.7331 7.6671 26 14 4.5370 -4.3432 6.8425 27 1 5.8003 -4.8405 6.2408 28 1 4.4822 -4.7359 8.2736 29 1 3.3799 -4.9331 6.1226 30 6 2.5256 -2.7466 2.3900 31 6 2.0716 -2.0925 1.2616 32 1 -0.3633 -1.0237 -0.0893 33 1 -0.3633 0.4345 0.9313 34 1 -0.3633 0.5893 -0.8419 35 1 1.4093 -1.4555 -1.4509 36 1 3.7259 1.7399 -1.9183 37 1 4.3253 0.0476 -1.9362 38 1 5.5131 -0.5266 -3.7708 39 1 5.9964 1.1835 -3.9057 40 1 6.4336 0.0581 -6.0396 41 1 5.0928 1.2080 -6.2461 42 1 4.8334 -1.7905 -5.8002 43 1 4.5889 -0.9400 -7.3382 44 1 2.4940 -1.5511 -5.9701 45 1 2.6179 0.1133 -6.5794 46 1 2.4314 1.1004 2.2948 47 1 3.2420 -0.0552 4.3108 48 1 5.3664 -2.1482 8.4478 49 1 2.5511 -3.8260 2.4158 50 1 1.7422 -2.6611 0.4044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834916358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:08 Heat of formation + Delta-G solvation = -56.964212 kcal Electronic energy + Delta-G solvation = -29910.948218 eV Core-core repulsion = 25902.368674 eV Total energy + Delta-G solvation = -4008.579544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.91795 -40.88866 -39.10110 -38.47458 -37.12021 -35.19711 -34.39240 -33.33051 -31.96964 -31.62120 -29.57626 -28.43156 -27.34497 -27.20413 -24.32346 -23.85966 -23.45429 -22.63652 -21.75490 -21.34693 -20.04623 -19.68990 -19.07965 -17.87469 -17.57664 -16.99511 -16.63028 -16.18391 -15.91441 -15.84582 -15.61708 -15.34375 -15.26917 -15.17743 -14.69313 -14.66030 -14.39199 -14.37591 -14.15934 -14.09222 -14.03950 -13.87056 -13.51940 -13.27819 -13.12097 -12.96170 -12.64128 -12.45362 -12.39946 -12.13269 -12.11326 -12.00221 -11.80801 -11.67512 -11.57409 -11.43443 -11.22617 -10.88237 -10.80767 -9.74491 -9.70977 -9.46372 -8.90984 -8.48045 -6.19557 0.63300 0.70552 1.31567 1.35469 1.41602 1.52203 1.98444 2.29237 2.78193 3.04768 3.15683 3.22105 3.26102 3.59392 3.86226 3.93976 3.97602 4.02789 4.05385 4.09050 4.17154 4.21438 4.31627 4.33161 4.39462 4.42196 4.54607 4.63410 4.69680 4.72431 4.79461 4.89119 4.90326 4.96431 4.97718 5.02885 5.11240 5.14696 5.19437 5.25417 5.27145 5.30805 5.44818 5.46576 5.60986 5.62853 5.76796 5.83966 5.95041 6.05927 6.11064 6.27526 6.30392 6.87006 7.07502 7.63564 8.63618 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002194 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.404938 B =12761.838198 C =13321.484084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.145 3.855 3 H 0.102 0.898 4 N -0.669 5.669 5 C 0.058 3.942 6 H 0.102 0.898 7 C -0.113 4.113 8 C 0.130 3.870 9 H 0.108 0.892 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.129 4.129 13 C 0.123 3.877 14 N -0.608 5.608 15 C 0.506 3.494 16 O -0.576 6.576 17 C -0.129 4.129 18 C -0.065 4.065 19 C -0.234 4.234 20 C 0.117 3.883 21 O -0.249 6.249 22 C -0.396 4.396 23 H 0.083 0.917 24 C 0.009 3.991 25 N -0.924 5.924 26 Si 0.968 3.032 27 H -0.267 1.267 28 H -0.267 1.267 29 H -0.266 1.266 30 C -0.196 4.196 31 C -0.050 4.050 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.345 0.655 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.141 0.859 47 H 0.109 0.891 48 H 0.284 0.716 49 H 0.120 0.880 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 8.957 -30.020 31.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.035 3.965 3 H 0.120 0.880 4 N -0.302 5.302 5 C -0.054 4.054 6 H 0.119 0.881 7 C -0.151 4.151 8 C 0.028 3.972 9 H 0.126 0.874 10 C -0.166 4.166 11 C -0.155 4.155 12 C -0.167 4.167 13 C 0.002 3.998 14 N -0.341 5.341 15 C 0.294 3.706 16 O -0.456 6.456 17 C -0.131 4.131 18 C -0.084 4.084 19 C -0.253 4.253 20 C 0.068 3.932 21 O -0.157 6.157 22 C -0.472 4.472 23 H 0.100 0.900 24 C -0.189 4.189 25 N -0.565 5.565 26 Si 0.791 3.209 27 H -0.192 1.192 28 H -0.192 1.192 29 H -0.190 1.190 30 C -0.215 4.215 31 C -0.069 4.069 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.165 0.835 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.159 0.841 47 H 0.127 0.873 48 H 0.093 0.907 49 H 0.138 0.862 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.673 8.336 -29.830 31.018 hybrid contribution -0.767 -0.688 0.580 1.182 sum -2.441 7.648 -29.250 30.332 Atomic orbital electron populations 1.22440 0.95610 1.02300 1.02706 1.20309 0.92883 0.97048 0.86212 0.88031 1.60714 1.55418 1.11051 1.02982 1.22298 0.99959 0.95534 0.87648 0.88051 1.22792 0.94149 1.03892 0.94279 1.22070 0.89579 0.92948 0.92647 0.87439 1.22008 0.95251 1.02455 0.96903 1.21373 1.00185 0.98814 0.95121 1.21538 0.93077 0.99451 1.02617 1.21314 0.98285 0.99412 0.80814 1.48610 1.28436 1.43943 1.13149 1.21395 0.80886 0.80735 0.87572 1.90687 1.35843 1.37354 1.81743 1.19581 1.04555 0.93252 0.95675 1.20891 0.95942 1.00115 0.91432 1.21246 1.09326 0.93793 1.00940 1.19642 0.94433 0.92186 0.86920 1.83517 1.71728 1.36516 1.23975 1.20716 1.37759 0.91517 0.97253 0.89959 1.25242 0.95023 1.04637 0.93978 1.69723 1.39561 1.37851 1.09348 0.85250 0.79473 0.78343 0.77840 1.19151 1.19179 1.19009 1.20466 1.08540 0.99769 0.92715 1.20667 0.96354 0.94384 0.95464 0.92886 0.91550 0.91528 0.83473 0.86965 0.89864 0.92620 0.88508 0.90484 0.90531 0.92836 0.88751 0.91768 0.90503 0.84097 0.87331 0.90651 0.86197 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 9.20 71.98 0.66 -2.68 16 2 C 0.14 3.04 2.63 44.17 0.12 3.15 16 3 H 0.10 1.76 7.61 -2.38 -0.02 1.75 16 4 N -0.67 -14.19 5.49 -473.43 -2.60 -16.79 16 5 C 0.06 1.00 3.09 44.89 0.14 1.14 16 6 H 0.10 1.42 7.60 -2.39 -0.02 1.40 16 7 C -0.11 -1.43 6.38 31.51 0.20 -1.23 16 8 C 0.13 1.38 3.65 45.27 0.17 1.54 16 9 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 10 C -0.13 -1.19 5.37 30.68 0.16 -1.02 16 11 C -0.12 -0.87 5.81 30.43 0.18 -0.69 16 12 C -0.13 -1.24 5.98 30.15 0.18 -1.06 16 13 C 0.12 1.69 6.74 86.11 0.58 2.27 16 14 N -0.61 -9.85 3.14 -794.51 -2.50 -12.35 16 15 C 0.51 11.12 7.58 87.82 0.67 11.78 16 16 O -0.58 -17.34 16.92 -3.03 -0.05 -17.39 16 17 C -0.13 -3.79 4.96 -19.83 -0.10 -3.88 16 18 C -0.07 -2.17 9.66 22.25 0.21 -1.95 16 19 C -0.23 -10.19 9.17 22.39 0.21 -9.99 16 20 C 0.12 5.57 6.65 22.58 0.15 5.72 16 21 O -0.25 -13.86 8.59 -22.72 -0.20 -14.06 16 22 C -0.40 -23.62 9.95 67.92 0.68 -22.94 16 23 H 0.08 5.10 5.44 -2.91 -0.02 5.08 16 24 C 0.01 0.54 5.49 84.84 0.47 1.01 16 25 N -0.92 -55.61 13.96 21.61 0.30 -55.31 16 26 Si 0.97 46.34 28.62 68.60 1.96 48.31 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 29 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 30 C -0.20 -7.83 9.99 22.39 0.22 -7.61 16 31 C -0.05 -1.63 9.32 22.25 0.21 -1.43 16 32 H 0.05 1.12 8.03 -2.39 -0.02 1.10 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.10 7.98 -2.39 -0.02 1.08 16 35 H 0.34 8.23 7.09 -89.69 -0.64 7.59 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.39 7.68 -2.39 -0.02 1.38 16 38 H 0.05 0.74 7.95 -2.39 -0.02 0.73 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 1.14 7.76 -2.39 -0.02 1.12 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.14 3.69 8.03 -2.91 -0.02 3.67 16 47 H 0.11 5.19 5.64 -2.91 -0.02 5.18 16 48 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 49 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 50 H 0.14 3.76 7.37 -2.91 -0.02 3.74 16 Total: -1.00 -73.02 397.48 2.33 -70.69 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.31 Total: 24.75 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 5.10 Total: -27.86 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -4.80 Total: -84.45 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.25 Total: -31.44 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.96 Total: 48.31 kcal Total: -73.02 2.33 -70.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834916358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.725 kcal (2) G-P(sol) polarization free energy of solvation -73.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds