Wall clock time and date at job start Wed Apr 1 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35930 * 117.00164 * 2 1 4 4 C 1.35061 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.47186 * 120.00090 * 173.40148 * 4 3 2 6 6 C 1.39833 * 120.16982 * 330.20284 * 5 4 3 7 7 C 1.37895 * 119.82524 * 179.79012 * 6 5 4 8 8 C 1.38398 * 120.16971 * 0.48570 * 7 6 5 9 9 C 1.38406 * 120.34638 * 359.74224 * 8 7 6 10 10 C 1.37889 * 120.17077 * 0.02562 * 9 8 7 11 11 C 1.46956 * 119.99924 * 180.02562 * 3 2 1 12 12 O 1.21665 * 120.00182 * 292.71134 * 11 3 2 13 13 N 1.34782 * 120.00172 * 112.71971 * 11 3 2 14 14 C 1.46969 * 120.58964 * 356.54287 * 13 11 3 15 15 C 1.53369 * 108.63313 * 235.20634 * 14 13 11 16 16 H 1.09007 * 109.61069 * 70.32374 * 15 14 13 17 17 C 1.52998 * 109.61107 * 190.83305 * 15 14 13 18 18 N 1.46966 * 108.63612 * 310.58317 * 15 14 13 19 19 C 1.36944 * 120.59182 * 235.21686 * 18 15 14 20 20 H 1.08000 * 120.00046 * 57.78320 * 19 18 15 21 21 C 1.38813 * 120.00057 * 237.78697 * 19 18 15 22 22 N 1.31621 * 119.99447 * 11.88169 * 21 19 18 23 23 Si 1.86795 * 120.00136 * 191.88524 * 21 19 18 24 24 H 1.48497 * 109.47270 * 89.99888 * 23 21 19 25 25 H 1.48503 * 109.47078 * 210.00121 * 23 21 19 26 26 H 1.48496 * 109.47047 * 329.99486 * 23 21 19 27 27 C 1.47349 * 118.89341 * 55.23198 * 18 15 14 28 28 H 1.09006 * 109.59719 * 64.46536 * 27 18 15 29 29 C 1.53002 * 109.82870 * 185.10257 * 27 18 15 30 30 C 1.46961 * 120.59569 * 176.52804 * 13 11 3 31 31 H 1.08993 * 109.47107 * 300.00153 * 1 2 3 32 32 H 1.09006 * 109.47158 * 60.00265 * 1 2 3 33 33 H 1.08998 * 109.47035 * 179.97438 * 1 2 3 34 34 H 1.07998 * 120.00487 * 353.40205 * 4 3 2 35 35 H 1.08001 * 120.08994 * 0.02562 * 6 5 4 36 36 H 1.07995 * 119.91668 * 180.24730 * 7 6 5 37 37 H 1.08000 * 119.82656 * 179.72681 * 8 7 6 38 38 H 1.07997 * 119.91081 * 180.02562 * 9 8 7 39 39 H 1.07997 * 120.08873 * 179.97438 * 10 9 8 40 40 H 1.08994 * 109.60909 * 354.94962 * 14 13 11 41 41 H 1.09001 * 109.60620 * 115.29676 * 14 13 11 42 42 H 1.09007 * 109.47138 * 60.00335 * 17 15 14 43 43 H 1.08999 * 109.47024 * 180.02562 * 17 15 14 44 44 H 1.08996 * 109.47375 * 299.99940 * 17 15 14 45 45 H 0.97005 * 119.99448 * 184.97052 * 22 21 19 46 46 H 1.08994 * 109.47076 * 177.89559 * 29 27 18 47 47 H 1.09000 * 109.46684 * 297.89311 * 29 27 18 48 48 H 1.09001 * 109.47024 * 57.88724 * 29 27 18 49 49 H 1.09007 * 109.60667 * 244.53675 * 30 13 11 50 50 H 1.09000 * 109.61021 * 4.86971 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.3106 2.3439 -0.0005 5 6 1.9717 3.6507 0.1459 6 6 3.1610 3.7591 0.8734 7 6 3.7766 4.9862 1.0024 8 6 3.2151 6.1105 0.4227 9 6 2.0356 6.0122 -0.2948 10 6 1.4105 4.7914 -0.4368 11 6 3.5137 1.2880 -0.0006 12 8 4.1428 0.9134 0.9710 13 7 4.1627 1.7736 -1.0774 14 6 3.4214 2.1593 -2.2864 15 6 4.0056 1.3985 -3.4830 16 1 3.7481 0.3421 -3.4060 17 6 3.4411 1.9747 -4.7831 18 7 5.4671 1.5521 -3.4690 19 6 6.1266 2.0457 -4.5631 20 1 5.8725 3.0206 -4.9523 21 6 7.1214 1.2930 -5.1719 22 7 7.2741 0.0248 -4.8547 23 14 8.2434 2.0801 -6.4411 24 1 9.4351 2.6500 -5.7628 25 1 8.6764 1.0538 -7.4232 26 1 7.5105 3.1620 -7.1465 27 6 6.2121 1.1658 -2.2579 28 1 6.1112 0.0929 -2.0933 29 6 7.6899 1.5271 -2.4201 30 6 5.6242 1.9273 -1.0635 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2373 2.2908 -0.1084 35 1 3.5982 2.8833 1.3297 36 1 4.6973 5.0708 1.5605 37 1 3.6997 7.0696 0.5310 38 1 1.6038 6.8940 -0.7446 39 1 0.4900 4.7163 -0.9966 40 1 2.3689 1.9020 -2.1678 41 1 3.5196 3.2327 -2.4488 42 1 3.7076 3.0289 -4.8592 43 1 3.8574 1.4321 -5.6319 44 1 2.3559 1.8732 -4.7845 45 1 8.0134 -0.4822 -5.2253 46 1 8.2284 1.2732 -1.5071 47 1 8.1105 0.9695 -3.2570 48 1 7.7837 2.5960 -2.6121 49 1 5.8817 2.9837 -1.1405 50 1 6.0261 1.5196 -0.1359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880453803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:04 Heat of formation + Delta-G solvation = -2.040287 kcal Electronic energy + Delta-G solvation = -32456.555381 eV Core-core repulsion = 28450.357517 eV Total energy + Delta-G solvation = -4006.197864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.97142 -39.98676 -39.61607 -38.83676 -36.01361 -34.55606 -34.31308 -33.09920 -31.81235 -30.34573 -29.52544 -28.42635 -27.71013 -27.41183 -25.77705 -24.14423 -23.32267 -22.48949 -22.04053 -21.19436 -20.25698 -18.89133 -18.09851 -17.89437 -17.53209 -17.26435 -16.85096 -16.41163 -16.23673 -16.17272 -15.87347 -15.52711 -15.45888 -15.32711 -14.87567 -14.44449 -14.42046 -13.94790 -13.75914 -13.68411 -13.61113 -13.30861 -13.22761 -13.01293 -12.70989 -12.60999 -12.54229 -12.43484 -12.33291 -12.21869 -12.18054 -12.03598 -11.81486 -11.77258 -11.66652 -11.48708 -11.10789 -10.54627 -10.20807 -9.87661 -9.71127 -8.85469 -8.31828 -7.65024 -5.68625 -0.13500 0.52461 0.99436 1.21592 1.47507 1.51240 1.57352 1.90258 2.49011 2.62646 2.97041 3.28032 3.43742 3.48070 3.90929 3.98982 4.08942 4.11023 4.18782 4.25363 4.30158 4.32768 4.41395 4.45714 4.46498 4.51262 4.56025 4.61492 4.71526 4.74298 4.79673 4.84246 4.88133 4.92246 4.96947 4.97023 5.10969 5.17999 5.18830 5.33685 5.43731 5.56277 5.60155 5.62916 5.64030 5.66072 5.74317 5.92695 6.09913 6.22551 6.32257 6.61280 6.89069 7.24499 7.74458 8.52167 9.16315 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.004162 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.471155 B = 6725.127728 C = 7417.025638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.050 3.950 4 C -0.184 4.184 5 C -0.057 4.057 6 C -0.143 4.143 7 C -0.128 4.128 8 C -0.122 4.122 9 C -0.119 4.119 10 C -0.104 4.104 11 C 0.570 3.430 12 O -0.581 6.581 13 N -0.574 5.574 14 C 0.113 3.887 15 C 0.150 3.850 16 H 0.001 0.999 17 C -0.114 4.114 18 N -0.588 5.588 19 C -0.256 4.256 20 H 0.053 0.947 21 C -0.003 4.003 22 N -0.910 5.910 23 Si 0.942 3.058 24 H -0.281 1.281 25 H -0.298 1.298 26 H -0.264 1.264 27 C 0.186 3.814 28 H -0.008 1.008 29 C -0.136 4.136 30 C 0.111 3.889 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.174 0.826 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.251 0.749 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.989 10.168 7.540 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.001 3.999 4 C -0.204 4.204 5 C -0.057 4.057 6 C -0.161 4.161 7 C -0.146 4.146 8 C -0.140 4.140 9 C -0.137 4.137 10 C -0.122 4.122 11 C 0.358 3.642 12 O -0.463 6.463 13 N -0.303 5.303 14 C -0.011 4.011 15 C 0.043 3.957 16 H 0.019 0.981 17 C -0.172 4.172 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.070 0.930 21 C -0.202 4.202 22 N -0.552 5.552 23 Si 0.770 3.230 24 H -0.207 1.207 25 H -0.225 1.225 26 H -0.189 1.189 27 C 0.080 3.920 28 H 0.010 0.990 29 C -0.194 4.194 30 C -0.013 4.013 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.191 0.809 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.093 0.907 48 H 0.067 0.933 49 H 0.090 0.910 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.515 9.623 7.889 19.888 hybrid contribution 1.097 -0.399 -0.429 1.244 sum -14.418 9.224 7.461 18.671 Atomic orbital electron populations 1.23524 0.75230 1.06055 1.03125 1.86099 1.24390 1.25750 1.87833 1.20848 0.90915 0.86671 1.01426 1.22267 1.00917 0.89183 1.08004 1.18787 0.94715 0.93486 0.98760 1.21749 0.96015 0.98293 1.00088 1.21177 1.00086 0.92817 1.00535 1.21515 0.96442 0.98670 0.97391 1.21428 0.95415 0.98393 0.98462 1.21525 1.00785 0.91204 0.98687 1.17914 0.86852 0.76675 0.82736 1.90779 1.68826 1.51190 1.35526 1.47865 1.07912 1.61094 1.13459 1.22388 0.95598 0.99698 0.83385 1.21021 0.85477 0.94823 0.94334 0.98128 1.21516 0.99341 1.00744 0.95570 1.44221 1.00555 1.75242 1.11303 1.18815 1.17123 0.97550 1.05122 0.92981 1.26243 1.01946 0.94411 0.97637 1.70207 1.30335 1.07693 1.46919 0.85688 0.79790 0.78001 0.79546 1.20680 1.22488 1.18880 1.20537 0.92530 0.93266 0.85704 0.98995 1.21868 0.94768 1.01420 1.01381 1.22237 0.78553 1.00838 0.99647 0.90980 0.90275 0.86249 0.80885 0.87967 0.86117 0.84136 0.83108 0.83042 0.88798 0.90802 0.92434 0.94134 0.90720 0.93998 0.93900 0.90682 0.93296 0.90957 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.34 16 2 O -0.33 -9.51 10.53 -92.76 -0.98 -10.48 16 3 C 0.05 1.53 5.12 23.82 0.12 1.65 16 4 C -0.18 -4.29 7.76 23.89 0.19 -4.11 16 5 C -0.06 -1.43 4.75 -20.15 -0.10 -1.52 16 6 C -0.14 -4.26 8.01 22.57 0.18 -4.08 16 7 C -0.13 -3.33 10.03 22.23 0.22 -3.10 16 8 C -0.12 -2.54 10.04 22.35 0.22 -2.31 16 9 C -0.12 -2.16 10.03 22.23 0.22 -1.94 16 10 C -0.10 -2.01 9.80 22.58 0.22 -1.78 16 11 C 0.57 21.94 4.22 86.53 0.37 22.30 16 12 O -0.58 -26.21 15.30 -4.24 -0.06 -26.27 16 13 N -0.57 -21.77 2.41 -822.41 -1.98 -23.75 16 14 C 0.11 3.84 4.85 86.41 0.42 4.26 16 15 C 0.15 6.16 3.66 45.03 0.16 6.32 16 16 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 17 C -0.11 -4.04 8.20 71.98 0.59 -3.45 16 18 N -0.59 -28.06 2.72 -649.78 -1.77 -29.82 16 19 C -0.26 -12.87 6.63 84.03 0.56 -12.31 16 20 H 0.05 2.61 7.27 -2.91 -0.02 2.59 16 21 C 0.00 -0.18 3.64 84.86 0.31 0.13 16 22 N -0.91 -51.35 11.45 21.65 0.25 -51.10 16 23 Si 0.94 41.85 29.57 68.60 2.03 43.88 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 C 0.19 8.81 3.20 44.95 0.14 8.95 16 28 H -0.01 -0.43 8.14 -2.38 -0.02 -0.44 16 29 C -0.14 -6.25 8.01 71.98 0.58 -5.67 16 30 C 0.11 4.55 5.90 86.41 0.51 5.05 16 31 H 0.07 0.92 7.74 -2.39 -0.02 0.90 16 32 H 0.08 0.91 7.55 -2.38 -0.02 0.89 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.17 2.63 6.22 -2.91 -0.02 2.61 16 35 H 0.10 3.68 4.79 -2.91 -0.01 3.67 16 36 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.09 2.74 5.70 -2.39 -0.01 2.73 16 41 H 0.07 2.45 8.12 -2.39 -0.02 2.43 16 42 H 0.06 1.99 7.51 -2.38 -0.02 1.97 16 43 H 0.04 1.64 7.75 -2.39 -0.02 1.62 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.25 13.81 8.32 -92.70 -0.77 13.04 16 46 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.07 3.88 4.56 -2.39 -0.01 3.87 16 48 H 0.05 2.16 7.84 -2.39 -0.02 2.14 16 49 H 0.07 2.83 8.12 -2.38 -0.02 2.81 16 50 H 0.07 3.07 6.98 -2.39 -0.02 3.05 16 Total: -1.00 -69.31 388.38 4.45 -64.86 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.93 Total: 22.95 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.03 Total: 9.73 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -3.50 Total: -104.67 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.04 Total: -36.75 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -69.31 4.45 -64.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880453803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.819 kcal (2) G-P(sol) polarization free energy of solvation -69.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds