Wall clock time and date at job start Wed Apr 1 2020 03:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35935 * 117.00141 * 2 1 4 4 C 1.35069 * 119.99969 * 243.80691 * 3 2 1 5 5 C 1.47177 * 119.99810 * 355.39707 * 4 3 2 6 6 C 1.39838 * 120.17235 * 351.79756 * 5 4 3 7 7 C 1.37891 * 119.82487 * 179.74849 * 6 5 4 8 8 C 1.38397 * 120.17202 * 0.52583 * 7 6 5 9 9 C 1.38396 * 120.34720 * 359.74871 * 8 7 6 10 10 C 1.37897 * 120.17082 * 359.97160 * 9 8 7 11 11 C 1.46949 * 120.00192 * 63.80893 * 3 2 1 12 12 O 1.21668 * 120.00159 * 213.72641 * 11 3 2 13 13 N 1.34781 * 120.00170 * 33.71933 * 11 3 2 14 14 C 1.46963 * 120.59231 * 0.02562 * 13 11 3 15 15 C 1.53814 * 108.39790 * 124.75790 * 14 13 11 16 16 H 1.09004 * 109.88235 * 289.76676 * 15 14 13 17 17 C 1.52995 * 109.53491 * 169.30281 * 15 14 13 18 18 N 1.46963 * 108.57716 * 49.63635 * 15 14 13 19 19 C 1.36933 * 120.59210 * 124.67094 * 18 15 14 20 20 H 1.08008 * 120.00313 * 323.24707 * 19 18 15 21 21 C 1.38815 * 120.00081 * 143.24478 * 19 18 15 22 22 N 1.31619 * 120.00028 * 350.77954 * 21 19 18 23 23 Si 1.86802 * 120.00046 * 170.77172 * 21 19 18 24 24 H 1.48505 * 109.46779 * 60.00134 * 23 21 19 25 25 H 1.48496 * 109.47126 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47321 * 300.00562 * 23 21 19 27 27 C 1.46961 * 118.81382 * 304.64874 * 18 15 14 28 28 H 1.09001 * 109.75289 * 175.05836 * 27 18 15 29 29 C 1.53007 * 109.60971 * 295.48024 * 27 18 15 30 30 C 1.46963 * 120.59325 * 180.30136 * 13 11 3 31 31 H 1.08998 * 109.47007 * 175.06215 * 1 2 3 32 32 H 1.09005 * 109.46745 * 55.06734 * 1 2 3 33 33 H 1.08992 * 109.47536 * 295.06379 * 1 2 3 34 34 H 1.07993 * 120.00145 * 175.39504 * 4 3 2 35 35 H 1.07999 * 120.08505 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.91334 * 180.25253 * 7 6 5 37 37 H 1.08008 * 119.82711 * 179.72595 * 8 7 6 38 38 H 1.07997 * 119.91675 * 179.97438 * 9 8 7 39 39 H 1.08001 * 120.08504 * 179.97438 * 10 9 8 40 40 H 1.08997 * 109.61096 * 244.54418 * 14 13 11 41 41 H 1.09001 * 109.60987 * 5.05481 * 14 13 11 42 42 H 1.09004 * 109.47238 * 305.04650 * 17 15 14 43 43 H 1.09003 * 109.47109 * 65.04066 * 17 15 14 44 44 H 1.08990 * 109.47625 * 185.04175 * 17 15 14 45 45 H 0.97001 * 119.99957 * 185.01168 * 22 21 19 46 46 H 1.09005 * 109.47110 * 179.14365 * 29 27 18 47 47 H 1.09001 * 109.47255 * 299.14779 * 29 27 18 48 48 H 1.09003 * 109.46609 * 59.14973 * 29 27 18 49 49 H 1.08999 * 109.61415 * 354.94734 * 30 13 11 50 50 H 1.09000 * 109.61324 * 115.46029 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 2.8128 1.5785 -1.0496 5 6 3.0625 0.6293 -2.1463 6 6 2.6549 -0.7033 -2.0290 7 6 2.8879 -1.5853 -3.0630 8 6 3.5330 -1.1574 -4.2102 9 6 3.9445 0.1584 -4.3316 10 6 3.7137 1.0539 -3.3087 11 6 1.8793 2.1209 1.1419 12 8 1.8593 3.3242 0.9633 13 7 1.7482 1.6223 2.3872 14 6 1.7708 0.1711 2.6181 15 6 2.8667 -0.1390 3.6519 16 1 3.8499 0.0205 3.2091 17 6 2.7401 -1.5929 4.1111 18 7 2.6924 0.7586 4.8025 19 6 2.5592 0.2520 6.0676 20 1 2.0116 -0.6652 6.2273 21 6 3.1280 0.9172 7.1451 22 7 3.9442 1.9287 6.9376 23 14 2.7350 0.3768 8.8895 24 1 3.1555 -1.0350 9.0770 25 1 3.4628 1.2426 9.8517 26 1 1.2736 0.4937 9.1266 27 6 2.6641 2.2095 4.5709 28 1 2.4418 2.7272 5.5041 29 6 4.0223 2.6712 4.0387 30 6 1.5740 2.5199 3.5378 31 1 -0.3633 -1.0238 -0.0885 32 1 -0.3633 0.5885 -0.8426 33 1 -0.3634 0.4353 0.9308 34 1 3.2425 2.5686 -1.0841 35 1 2.1557 -1.0398 -1.1323 36 1 2.5701 -2.6137 -2.9756 37 1 3.7165 -1.8540 -5.0149 38 1 4.4476 0.4847 -5.2298 39 1 4.0358 2.0803 -3.4047 40 1 0.8025 -0.1540 2.9986 41 1 1.9911 -0.3446 1.6834 42 1 1.7304 -1.7705 4.4814 43 1 2.9411 -2.2580 3.2712 44 1 3.4585 -1.7863 4.9076 45 1 4.3982 2.3469 7.6858 46 1 3.9940 3.7450 3.8534 47 1 4.7953 2.4496 4.7745 48 1 4.2450 2.1478 3.1088 49 1 1.6643 3.5557 3.2107 50 1 0.5921 2.3583 3.9825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880453804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:06 Heat of formation + Delta-G solvation = 4.704910 kcal Electronic energy + Delta-G solvation = -31705.752472 eV Core-core repulsion = 27699.847101 eV Total energy + Delta-G solvation = -4005.905370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.79504 -40.20421 -39.16521 -38.80419 -35.66526 -34.31758 -34.14989 -33.17816 -31.74514 -30.57584 -29.71371 -27.99905 -27.71970 -27.28010 -25.57251 -24.51456 -23.43610 -22.66140 -21.90932 -20.95314 -20.25813 -19.03175 -17.92429 -17.61674 -17.44924 -17.17941 -16.94777 -16.54221 -15.99367 -15.91233 -15.76385 -15.51215 -15.28222 -15.04124 -14.79754 -14.47040 -14.19113 -13.96331 -13.84175 -13.74251 -13.61627 -13.49065 -13.08235 -12.87647 -12.77565 -12.74522 -12.47284 -12.35538 -12.29513 -12.13925 -11.99841 -11.97456 -11.78353 -11.70096 -11.57161 -11.36382 -10.94191 -10.46723 -10.28113 -9.78485 -9.76319 -9.00267 -8.37923 -7.80748 -5.34550 -0.41683 0.60420 1.04227 1.49908 1.51355 1.56915 1.62841 1.97772 2.52979 2.72448 3.06689 3.32081 3.35970 3.56779 3.96100 4.07850 4.16964 4.22298 4.23779 4.33924 4.37674 4.40503 4.48880 4.55259 4.58770 4.61262 4.65812 4.67970 4.76072 4.77731 4.79923 4.84482 4.94456 4.95557 5.03937 5.08885 5.15931 5.17359 5.31680 5.33586 5.43422 5.57508 5.62333 5.70041 5.72881 5.73766 5.80391 5.84141 6.13598 6.18166 6.49310 6.52236 7.02562 7.23187 7.88564 8.46727 9.25089 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.002990 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.535441 B = 9361.529504 C = 9785.067176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.310 6.310 3 C 0.010 3.990 4 C -0.057 4.057 5 C -0.087 4.087 6 C -0.113 4.113 7 C -0.135 4.135 8 C -0.114 4.114 9 C -0.134 4.134 10 C -0.111 4.111 11 C 0.528 3.472 12 O -0.582 6.582 13 N -0.581 5.581 14 C 0.087 3.913 15 C 0.148 3.852 16 H 0.009 0.991 17 C -0.124 4.124 18 N -0.594 5.594 19 C -0.254 4.254 20 H 0.071 0.929 21 C -0.039 4.039 22 N -0.925 5.925 23 Si 0.960 3.040 24 H -0.277 1.277 25 H -0.301 1.301 26 H -0.280 1.280 27 C 0.188 3.812 28 H 0.067 0.933 29 C -0.122 4.122 30 C 0.101 3.899 31 H 0.132 0.868 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.139 0.861 35 H 0.163 0.837 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.247 0.753 46 H 0.032 0.968 47 H 0.050 0.950 48 H 0.020 0.980 49 H 0.074 0.926 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 -8.150 -21.280 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.227 6.227 3 C -0.036 4.036 4 C -0.077 4.077 5 C -0.087 4.087 6 C -0.130 4.130 7 C -0.153 4.153 8 C -0.132 4.132 9 C -0.152 4.152 10 C -0.129 4.129 11 C 0.317 3.683 12 O -0.465 6.465 13 N -0.310 5.310 14 C -0.036 4.036 15 C 0.042 3.958 16 H 0.027 0.973 17 C -0.182 4.182 18 N -0.318 5.318 19 C -0.384 4.384 20 H 0.089 0.911 21 C -0.235 4.235 22 N -0.570 5.570 23 Si 0.789 3.211 24 H -0.203 1.203 25 H -0.228 1.228 26 H -0.206 1.206 27 C 0.080 3.920 28 H 0.085 0.915 29 C -0.182 4.182 30 C -0.023 4.023 31 H 0.150 0.850 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.157 0.843 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.151 0.849 40 H 0.089 0.911 41 H 0.146 0.854 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.039 0.961 49 H 0.092 0.908 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.961 -7.603 -21.193 23.055 hybrid contribution 0.140 0.663 1.629 1.764 sum -4.821 -6.940 -19.564 21.311 Atomic orbital electron populations 1.23294 0.77524 1.05639 1.00952 1.85945 1.21653 1.23657 1.91452 1.20513 1.02493 0.87188 0.93372 1.22441 0.97710 0.98094 0.89475 1.18967 1.01770 0.93883 0.94109 1.22657 0.97226 0.92304 1.00859 1.21498 0.99541 1.00627 0.93657 1.21681 0.96960 0.96310 0.98249 1.21360 1.00754 0.93751 0.99339 1.21592 0.97672 1.00689 0.92933 1.19176 0.76981 0.88157 0.83952 1.90760 1.53685 1.16481 1.85539 1.48040 1.68626 1.08725 1.05632 1.23034 0.99918 0.78613 1.01989 1.21075 0.94450 0.91912 0.88381 0.97292 1.21645 1.01776 0.93820 1.00912 1.44280 1.84537 1.00342 1.02602 1.19308 1.27165 1.08395 0.83576 0.91116 1.25961 0.97102 0.98867 1.01589 1.70053 1.30831 1.25695 1.30445 0.85475 0.77471 0.77452 0.80725 1.20281 1.22763 1.20581 1.20439 0.91292 0.85366 0.94876 0.91542 1.21810 1.00425 0.97527 0.98394 1.22228 0.99664 0.93859 0.86598 0.85027 0.92837 0.94153 0.84316 0.82051 0.83908 0.83716 0.83784 0.84917 0.91055 0.85419 0.92430 0.90516 0.93841 0.94343 0.94944 0.93123 0.96103 0.90780 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.49 113.37 1.19 1.53 16 2 O -0.31 -6.99 3.40 -92.82 -0.32 -7.31 16 3 C 0.01 0.29 5.30 23.82 0.13 0.42 16 4 C -0.06 -1.51 9.47 23.89 0.23 -1.29 16 5 C -0.09 -1.99 5.86 -20.16 -0.12 -2.11 16 6 C -0.11 -2.33 9.08 22.57 0.21 -2.12 16 7 C -0.14 -2.22 10.03 22.23 0.22 -1.99 16 8 C -0.11 -1.67 10.04 22.35 0.22 -1.45 16 9 C -0.13 -2.11 10.03 22.23 0.22 -1.88 16 10 C -0.11 -2.15 9.80 22.58 0.22 -1.93 16 11 C 0.53 18.89 7.08 86.52 0.61 19.50 16 12 O -0.58 -24.35 16.08 -4.25 -0.07 -24.42 16 13 N -0.58 -21.11 2.60 -821.57 -2.14 -23.25 16 14 C 0.09 2.83 4.64 86.57 0.40 3.23 16 15 C 0.15 5.82 3.24 45.18 0.15 5.97 16 16 H 0.01 0.41 7.38 -2.38 -0.02 0.39 16 17 C -0.12 -4.18 8.01 71.98 0.58 -3.60 16 18 N -0.59 -28.11 2.65 -649.89 -1.72 -29.83 16 19 C -0.25 -13.00 8.27 84.03 0.69 -12.31 16 20 H 0.07 3.48 6.56 -2.91 -0.02 3.46 16 21 C -0.04 -2.07 5.05 84.86 0.43 -1.64 16 22 N -0.93 -52.47 9.98 21.65 0.22 -52.26 16 23 Si 0.96 43.49 29.57 68.60 2.03 45.52 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 27 C 0.19 8.87 2.32 45.03 0.10 8.98 16 28 H 0.07 3.59 6.41 -2.39 -0.02 3.57 16 29 C -0.12 -5.85 8.95 71.98 0.64 -5.21 16 30 C 0.10 4.11 5.96 86.41 0.52 4.63 16 31 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.04 0.82 7.49 -2.39 -0.02 0.80 16 34 H 0.14 3.74 7.85 -2.91 -0.02 3.72 16 35 H 0.16 3.26 4.63 -35.64 -0.16 3.09 16 36 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 38 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 41 H 0.13 3.56 4.48 -2.52 -0.01 3.55 16 42 H 0.06 1.87 7.58 -2.38 -0.02 1.85 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.04 1.67 7.50 -2.39 -0.02 1.65 16 45 H 0.25 13.89 8.32 -92.71 -0.77 13.12 16 46 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 47 H 0.05 2.70 6.86 -2.39 -0.02 2.69 16 48 H 0.02 0.95 7.00 -2.39 -0.02 0.93 16 49 H 0.07 3.11 6.96 -2.39 -0.02 3.09 16 50 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -65.75 389.29 5.43 -60.32 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.78 Total: 22.50 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.64 Total: 8.72 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -3.64 Total: -105.34 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.38 Total: -31.73 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.75 5.43 -60.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880453804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.023 kcal (2) G-P(sol) polarization free energy of solvation -65.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds