Wall clock time and date at job start Wed Apr 1 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.74500 * 2 1 4 4 C 1.53810 * 109.69549 * 120.66316 * 2 1 3 5 5 N 1.46970 * 108.57812 * 169.28667 * 4 2 1 6 6 C 1.34776 * 120.59085 * 124.62665 * 5 4 2 7 7 O 1.21582 * 120.00193 * 176.07083 * 6 5 4 8 8 C 1.47537 * 119.99873 * 356.06713 * 6 5 4 9 9 C 1.39704 * 120.19290 * 53.34471 * 8 6 5 10 10 C 1.37792 * 119.91035 * 179.74574 * 9 8 6 11 11 C 1.38546 * 120.29979 * 0.54837 * 10 9 8 12 12 C 1.38065 * 120.38712 * 359.70236 * 11 10 9 13 13 C 1.38704 * 120.08356 * 0.02562 * 12 11 10 14 14 O 1.35657 * 120.14957 * 180.02562 * 13 12 11 15 15 C 1.42905 * 116.99650 * 5.45173 * 14 13 12 16 16 C 1.53003 * 117.49455 * 226.02172 * 15 14 13 17 17 C 1.52999 * 117.49848 * 157.36177 * 15 14 13 18 18 C 1.46965 * 118.81344 * 304.65419 * 5 4 2 19 19 C 1.53371 * 108.63693 * 55.22268 * 18 5 4 20 20 H 1.08995 * 109.74757 * 190.74717 * 19 18 5 21 21 C 1.52997 * 109.60758 * 70.32237 * 19 18 5 22 22 N 1.46962 * 109.60988 * 239.57365 * 2 1 3 23 23 C 1.36941 * 120.59659 * 5.05196 * 22 2 1 24 24 H 1.07994 * 119.99907 * 324.37598 * 23 22 2 25 25 C 1.38809 * 120.00144 * 144.37075 * 23 22 2 26 26 N 1.31616 * 120.00331 * 355.50138 * 25 23 22 27 27 Si 1.86798 * 119.99911 * 175.50247 * 25 23 22 28 28 H 1.48499 * 109.47318 * 270.00314 * 27 25 23 29 29 H 1.48499 * 109.47374 * 30.00350 * 27 25 23 30 30 H 1.48505 * 109.47222 * 149.99814 * 27 25 23 31 31 H 1.08991 * 109.47076 * 184.88309 * 1 2 3 32 32 H 1.09001 * 109.47017 * 304.88442 * 1 2 3 33 33 H 1.09006 * 109.47159 * 64.88521 * 1 2 3 34 34 H 1.08998 * 109.73759 * 49.50549 * 4 2 1 35 35 H 1.08995 * 109.67413 * 289.04083 * 4 2 1 36 36 H 1.08003 * 120.04755 * 359.97438 * 9 8 6 37 37 H 1.07996 * 119.85224 * 180.27527 * 10 9 8 38 38 H 1.07999 * 119.80453 * 179.72241 * 11 10 9 39 39 H 1.08000 * 119.95638 * 179.97438 * 12 11 10 40 40 H 1.09004 * 115.55189 * 11.68860 * 15 14 13 41 41 H 1.09000 * 117.50365 * 359.97438 * 16 15 14 42 42 H 1.09006 * 117.49785 * 145.02228 * 16 15 14 43 43 H 1.09002 * 117.50204 * 214.97537 * 17 15 14 44 44 H 1.08998 * 117.49478 * 359.97438 * 17 15 14 45 45 H 1.08996 * 109.60530 * 295.47708 * 18 5 4 46 46 H 1.09005 * 109.74590 * 175.05397 * 18 5 4 47 47 H 1.09000 * 109.47300 * 300.85176 * 21 19 18 48 48 H 1.08994 * 109.47480 * 60.85132 * 21 19 18 49 49 H 1.09004 * 109.46970 * 180.85647 * 21 19 18 50 50 H 0.96998 * 120.00609 * 174.99943 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0484 -0.7385 1.2456 5 7 3.4950 -0.9508 1.0960 6 6 4.3534 -0.5145 2.0389 7 8 5.5405 -0.7581 1.9399 8 6 3.8527 0.2590 3.1911 9 6 2.8154 -0.2460 3.9790 10 6 2.3559 0.4788 5.0570 11 6 2.9102 1.7126 5.3571 12 6 3.9323 2.2258 4.5837 13 6 4.4110 1.5072 3.4983 14 8 5.4155 2.0099 2.7378 15 6 6.0164 3.2287 3.1801 16 6 6.2449 4.3233 2.1357 17 6 7.4337 3.5354 2.6921 18 6 3.9886 -1.6469 -0.1005 19 6 3.4698 -0.9133 -1.3435 20 1 3.6613 -1.5141 -2.2325 21 6 4.1761 0.4375 -1.4746 22 7 2.0233 -0.7011 -1.1937 23 6 1.1511 -1.1437 -2.1523 24 1 0.1793 -1.5182 -1.8665 25 6 1.5161 -1.1108 -3.4911 26 7 2.6634 -0.5732 -3.8475 27 14 0.3789 -1.8296 -4.7871 28 1 0.7040 -3.2642 -4.9902 29 1 -1.0300 -1.7004 -4.3360 30 1 0.5585 -1.0954 -6.0654 31 1 -0.3633 -1.0239 0.0875 32 1 -0.3633 0.5878 0.8430 33 1 -0.3634 0.4362 -0.9306 34 1 1.5452 -1.7009 1.3390 35 1 1.8568 -0.1378 2.1347 36 1 2.3768 -1.2050 3.7457 37 1 1.5570 0.0855 5.6680 38 1 2.5408 2.2760 6.2012 39 1 4.3590 3.1885 4.8238 40 1 5.7526 3.5436 4.1898 41 1 5.9374 4.1136 1.1113 42 1 6.1319 5.3583 2.4585 43 1 8.1022 4.0525 3.3805 44 1 7.9079 2.8073 2.0340 45 1 3.6235 -2.6739 -0.1029 46 1 5.0787 -1.6462 -0.1036 47 1 3.9881 1.0340 -0.5819 48 1 5.2486 0.2775 -1.5854 49 1 3.7948 0.9635 -2.3499 50 1 2.9519 -0.6146 -4.7727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880455012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:49 Heat of formation + Delta-G solvation = 29.190321 kcal Electronic energy + Delta-G solvation = -32007.772600 eV Core-core repulsion = 28002.928997 eV Total energy + Delta-G solvation = -4004.843603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.65415 -39.29101 -37.84780 -37.04407 -35.36215 -33.94109 -32.69034 -31.71092 -30.70487 -29.90766 -27.86840 -26.26237 -25.64457 -24.19652 -23.64865 -22.96654 -22.59739 -21.18763 -20.86482 -19.90276 -18.80957 -18.13399 -17.06232 -16.29880 -16.10620 -15.58969 -15.24535 -15.14675 -14.94048 -14.81936 -14.43794 -14.16105 -14.00034 -13.91872 -13.40768 -13.29780 -13.04157 -12.58240 -12.46491 -12.24963 -11.93090 -11.83141 -11.71400 -11.66005 -11.44989 -11.21882 -11.10004 -10.93871 -10.74055 -10.65899 -10.59058 -10.53877 -10.20618 -10.10052 -9.98463 -9.71823 -9.63236 -9.30608 -8.92451 -8.45122 -8.23197 -8.03783 -6.51861 -5.74314 -3.33407 1.00334 1.30154 2.91282 3.08710 3.36126 3.42421 3.43978 3.44542 3.59727 3.83300 4.39539 4.46238 4.61692 4.70416 4.77720 4.81080 4.90673 5.00244 5.22142 5.25219 5.37150 5.39456 5.43728 5.53453 5.70413 5.71318 5.75663 5.77154 5.95824 5.96022 6.05527 6.18072 6.18545 6.22470 6.31511 6.33357 6.35831 6.44225 6.57587 6.61768 6.73968 6.87785 6.97796 7.00794 7.11028 7.17130 7.35532 7.69112 7.73324 7.84465 8.03335 8.49485 8.68705 9.22998 9.81152 10.42015 11.28129 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.003678 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.611233 B = 7610.852703 C = 8545.708675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.155 3.845 3 H 0.030 0.970 4 C 0.086 3.914 5 N -0.587 5.587 6 C 0.560 3.440 7 O -0.542 6.542 8 C -0.151 4.151 9 C -0.050 4.050 10 C -0.165 4.165 11 C -0.065 4.065 12 C -0.217 4.217 13 C 0.177 3.823 14 O -0.262 6.262 15 C -0.003 4.003 16 C -0.183 4.183 17 C -0.168 4.168 18 C 0.093 3.907 19 C 0.180 3.820 20 H 0.108 0.892 21 C -0.136 4.136 22 N -0.581 5.581 23 C -0.252 4.252 24 H 0.068 0.932 25 C 0.009 3.991 26 N -0.898 5.898 27 Si 0.902 3.098 28 H -0.288 1.288 29 H -0.279 1.279 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.020 0.980 48 H 0.026 0.974 49 H 0.074 0.926 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 6.954 17.687 19.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 H 0.048 0.952 4 C -0.038 4.038 5 N -0.318 5.318 6 C 0.347 3.653 7 O -0.420 6.420 8 C -0.155 4.155 9 C -0.069 4.069 10 C -0.183 4.183 11 C -0.083 4.083 12 C -0.235 4.235 13 C 0.130 3.870 14 O -0.174 6.174 15 C -0.059 4.059 16 C -0.220 4.220 17 C -0.205 4.205 18 C -0.030 4.030 19 C 0.073 3.927 20 H 0.126 0.874 21 C -0.195 4.195 22 N -0.304 5.304 23 C -0.382 4.382 24 H 0.085 0.915 25 C -0.190 4.190 26 N -0.542 5.542 27 Si 0.732 3.268 28 H -0.215 1.215 29 H -0.205 1.205 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.039 0.961 48 H 0.045 0.955 49 H 0.093 0.907 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.382 6.808 17.218 18.667 hybrid contribution -0.616 -0.159 -0.618 0.887 sum 1.766 6.649 16.599 17.969 Atomic orbital electron populations 1.21755 0.95314 1.01104 1.01048 1.20864 0.93104 0.93965 0.87312 0.95200 1.22728 0.80062 1.00751 1.00304 1.47907 1.06977 1.56217 1.20658 1.17972 0.85884 0.79318 0.82078 1.90736 1.15859 1.58056 1.77346 1.19331 1.00903 0.94736 1.00492 1.21162 0.92865 0.99556 0.93309 1.20959 1.02504 0.95897 0.98922 1.21026 0.94172 0.95155 0.97924 1.21160 1.02231 1.01953 0.98200 1.18856 0.87215 0.91270 0.89674 1.86173 1.45981 1.37642 1.47578 1.23070 0.98474 0.86394 0.97989 1.23491 1.01982 0.96279 1.00226 1.23355 0.90588 1.02685 1.03836 1.22522 0.99517 0.95492 0.85472 1.20754 0.82988 0.94882 0.94052 0.87395 1.21950 0.97490 0.99413 1.00607 1.44094 1.01802 1.64440 1.20050 1.19124 0.98537 1.35145 0.85361 0.91478 1.25275 0.97515 0.98844 0.97369 1.69926 1.21201 1.46133 1.16896 0.86311 0.80620 0.78413 0.81490 1.21528 1.20492 1.21760 0.92844 0.94229 0.91324 0.91704 0.90484 0.84714 0.85337 0.85542 0.84879 0.85885 0.87539 0.87774 0.87614 0.87496 0.92379 0.90252 0.96063 0.95489 0.90748 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.01 37.16 0.30 -2.10 16 2 C 0.16 3.14 3.25 -67.26 -0.22 2.92 16 3 H 0.03 0.67 7.38 -51.93 -0.38 0.29 16 4 C 0.09 1.51 5.03 -3.36 -0.02 1.49 16 5 N -0.59 -11.43 2.59 -173.44 -0.45 -11.88 16 6 C 0.56 11.09 6.87 -12.47 -0.09 11.00 16 7 O -0.54 -12.43 16.16 1.42 0.02 -12.40 16 8 C -0.15 -2.47 4.94 -104.85 -0.52 -2.99 16 9 C -0.05 -0.65 7.39 -39.20 -0.29 -0.94 16 10 C -0.16 -1.70 10.02 -39.63 -0.40 -2.10 16 11 C -0.06 -0.64 10.03 -39.53 -0.40 -1.03 16 12 C -0.22 -2.51 9.10 -39.47 -0.36 -2.87 16 13 C 0.18 2.72 6.68 -38.70 -0.26 2.46 16 14 O -0.26 -4.34 9.57 -22.55 -0.22 -4.56 16 15 C 0.00 -0.03 6.09 -26.73 -0.16 -0.20 16 16 C -0.18 -1.91 10.48 -26.69 -0.28 -2.19 16 17 C -0.17 -1.74 10.48 -26.69 -0.28 -2.02 16 18 C 0.09 1.97 5.95 -3.60 -0.02 1.95 16 19 C 0.18 4.25 2.33 -67.49 -0.16 4.09 16 20 H 0.11 2.85 6.11 -51.93 -0.32 2.53 16 21 C -0.14 -3.21 8.91 37.16 0.33 -2.88 16 22 N -0.58 -13.79 2.67 -156.77 -0.42 -14.20 16 23 C -0.25 -6.44 8.32 -15.06 -0.13 -6.57 16 24 H 0.07 1.68 6.51 -52.49 -0.34 1.34 16 25 C 0.01 0.24 5.16 -17.43 -0.09 0.15 16 26 N -0.90 -24.71 9.76 55.49 0.54 -24.16 16 27 Si 0.90 20.98 29.56 -169.99 -5.02 15.95 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 31 H 0.05 0.93 7.60 -51.93 -0.39 0.53 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.35 7.47 -51.93 -0.39 0.96 16 34 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 35 H 0.08 1.18 4.60 -51.93 -0.24 0.94 16 36 H 0.14 1.58 7.29 -52.48 -0.38 1.19 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 1.19 5.67 -52.49 -0.30 0.89 16 40 H 0.12 1.11 5.55 -51.93 -0.29 0.82 16 41 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.08 1.72 7.00 -51.93 -0.36 1.36 16 47 H 0.02 0.49 7.00 -51.93 -0.36 0.12 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 1.94 7.06 -51.93 -0.37 1.57 16 50 H 0.25 6.85 8.32 -40.82 -0.34 6.51 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -31.54 389.45 -10.19 -41.73 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.49 Total: 5.47 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -3.03 Total: -1.81 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.33 Total: -50.25 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.19 Total: -16.96 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.54 -10.19 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880455012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.924 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds