Wall clock time and date at job start Wed Apr 1 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.74500 * 2 1 4 4 C 1.53810 * 109.69549 * 120.66316 * 2 1 3 5 5 N 1.46970 * 108.57812 * 169.28667 * 4 2 1 6 6 C 1.34776 * 120.59085 * 124.62665 * 5 4 2 7 7 O 1.21582 * 120.00193 * 176.07083 * 6 5 4 8 8 C 1.47537 * 119.99873 * 356.06713 * 6 5 4 9 9 C 1.39704 * 120.19290 * 53.34471 * 8 6 5 10 10 C 1.37792 * 119.91035 * 179.74574 * 9 8 6 11 11 C 1.38546 * 120.29979 * 0.54837 * 10 9 8 12 12 C 1.38065 * 120.38712 * 359.70236 * 11 10 9 13 13 C 1.38704 * 120.08356 * 0.02562 * 12 11 10 14 14 O 1.35657 * 120.14957 * 180.02562 * 13 12 11 15 15 C 1.42905 * 116.99650 * 5.45173 * 14 13 12 16 16 C 1.53003 * 117.49455 * 226.02172 * 15 14 13 17 17 C 1.52999 * 117.49848 * 157.36177 * 15 14 13 18 18 C 1.46965 * 118.81344 * 304.65419 * 5 4 2 19 19 C 1.53371 * 108.63693 * 55.22268 * 18 5 4 20 20 H 1.08995 * 109.74757 * 190.74717 * 19 18 5 21 21 C 1.52997 * 109.60758 * 70.32237 * 19 18 5 22 22 N 1.46962 * 109.60988 * 239.57365 * 2 1 3 23 23 C 1.36941 * 120.59659 * 5.05196 * 22 2 1 24 24 H 1.07994 * 119.99907 * 324.37598 * 23 22 2 25 25 C 1.38809 * 120.00144 * 144.37075 * 23 22 2 26 26 N 1.31616 * 120.00331 * 355.50138 * 25 23 22 27 27 Si 1.86798 * 119.99911 * 175.50247 * 25 23 22 28 28 H 1.48499 * 109.47318 * 270.00314 * 27 25 23 29 29 H 1.48499 * 109.47374 * 30.00350 * 27 25 23 30 30 H 1.48505 * 109.47222 * 149.99814 * 27 25 23 31 31 H 1.08991 * 109.47076 * 184.88309 * 1 2 3 32 32 H 1.09001 * 109.47017 * 304.88442 * 1 2 3 33 33 H 1.09006 * 109.47159 * 64.88521 * 1 2 3 34 34 H 1.08998 * 109.73759 * 49.50549 * 4 2 1 35 35 H 1.08995 * 109.67413 * 289.04083 * 4 2 1 36 36 H 1.08003 * 120.04755 * 359.97438 * 9 8 6 37 37 H 1.07996 * 119.85224 * 180.27527 * 10 9 8 38 38 H 1.07999 * 119.80453 * 179.72241 * 11 10 9 39 39 H 1.08000 * 119.95638 * 179.97438 * 12 11 10 40 40 H 1.09004 * 115.55189 * 11.68860 * 15 14 13 41 41 H 1.09000 * 117.50365 * 359.97438 * 16 15 14 42 42 H 1.09006 * 117.49785 * 145.02228 * 16 15 14 43 43 H 1.09002 * 117.50204 * 214.97537 * 17 15 14 44 44 H 1.08998 * 117.49478 * 359.97438 * 17 15 14 45 45 H 1.08996 * 109.60530 * 295.47708 * 18 5 4 46 46 H 1.09005 * 109.74590 * 175.05397 * 18 5 4 47 47 H 1.09000 * 109.47300 * 300.85176 * 21 19 18 48 48 H 1.08994 * 109.47480 * 60.85132 * 21 19 18 49 49 H 1.09004 * 109.46970 * 180.85647 * 21 19 18 50 50 H 0.96998 * 120.00609 * 174.99943 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0484 -0.7385 1.2456 5 7 3.4950 -0.9508 1.0960 6 6 4.3534 -0.5145 2.0389 7 8 5.5405 -0.7581 1.9399 8 6 3.8527 0.2590 3.1911 9 6 2.8154 -0.2460 3.9790 10 6 2.3559 0.4788 5.0570 11 6 2.9102 1.7126 5.3571 12 6 3.9323 2.2258 4.5837 13 6 4.4110 1.5072 3.4983 14 8 5.4155 2.0099 2.7378 15 6 6.0164 3.2287 3.1801 16 6 6.2449 4.3233 2.1357 17 6 7.4337 3.5354 2.6921 18 6 3.9886 -1.6469 -0.1005 19 6 3.4698 -0.9133 -1.3435 20 1 3.6613 -1.5141 -2.2325 21 6 4.1761 0.4375 -1.4746 22 7 2.0233 -0.7011 -1.1937 23 6 1.1511 -1.1437 -2.1523 24 1 0.1793 -1.5182 -1.8665 25 6 1.5161 -1.1108 -3.4911 26 7 2.6634 -0.5732 -3.8475 27 14 0.3789 -1.8296 -4.7871 28 1 0.7040 -3.2642 -4.9902 29 1 -1.0300 -1.7004 -4.3360 30 1 0.5585 -1.0954 -6.0654 31 1 -0.3633 -1.0239 0.0875 32 1 -0.3633 0.5878 0.8430 33 1 -0.3634 0.4362 -0.9306 34 1 1.5452 -1.7009 1.3390 35 1 1.8568 -0.1378 2.1347 36 1 2.3768 -1.2050 3.7457 37 1 1.5570 0.0855 5.6680 38 1 2.5408 2.2760 6.2012 39 1 4.3590 3.1885 4.8238 40 1 5.7526 3.5436 4.1898 41 1 5.9374 4.1136 1.1113 42 1 6.1319 5.3583 2.4585 43 1 8.1022 4.0525 3.3805 44 1 7.9079 2.8073 2.0340 45 1 3.6235 -2.6739 -0.1029 46 1 5.0787 -1.6462 -0.1036 47 1 3.9881 1.0340 -0.5819 48 1 5.2486 0.2775 -1.5854 49 1 3.7948 0.9635 -2.3499 50 1 2.9519 -0.6146 -4.7727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880455012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:48 Heat of formation + Delta-G solvation = 11.792933 kcal Electronic energy + Delta-G solvation = -32008.527008 eV Core-core repulsion = 28002.928997 eV Total energy + Delta-G solvation = -4005.598011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.82183 -40.63258 -39.00742 -38.54590 -36.28794 -35.65152 -34.36515 -33.37390 -32.01906 -30.85368 -29.74415 -27.85315 -27.26328 -25.65112 -24.91224 -24.21911 -23.42798 -22.54803 -22.07816 -21.32097 -20.41122 -19.33842 -18.44441 -17.81672 -17.40708 -16.93848 -16.84846 -16.37228 -16.11015 -15.94237 -15.78098 -15.69360 -15.32945 -15.10237 -14.98687 -14.78180 -14.51081 -14.15240 -13.68063 -13.52409 -13.45651 -13.27520 -12.93989 -12.89924 -12.79861 -12.69461 -12.54233 -12.43619 -12.33467 -12.29902 -12.12473 -11.97953 -11.78754 -11.57769 -11.48949 -11.43423 -11.05452 -10.81989 -10.46075 -9.94261 -9.72993 -9.15781 -8.45706 -7.74109 -5.36306 0.03897 0.39832 1.49927 1.51534 1.59010 1.66413 2.01147 2.09992 2.54201 2.66124 2.85953 3.37616 3.49885 3.53305 3.57278 3.86635 3.92151 3.94867 4.00932 4.13117 4.21214 4.21236 4.32985 4.42354 4.47575 4.55155 4.59696 4.63746 4.65194 4.69404 4.70556 4.76498 4.85190 4.90092 4.91914 4.93382 5.07021 5.12268 5.14910 5.23593 5.32686 5.35961 5.42318 5.48968 5.57168 5.70559 5.74363 5.81183 5.82500 6.39914 6.49942 6.52646 7.16342 7.22794 7.87866 8.45529 9.25837 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.003678 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.611233 B = 7610.852703 C = 8545.708675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.149 3.851 3 H 0.006 0.994 4 C 0.097 3.903 5 N -0.590 5.590 6 C 0.558 3.442 7 O -0.587 6.587 8 C -0.189 4.189 9 C -0.056 4.056 10 C -0.153 4.153 11 C -0.050 4.050 12 C -0.214 4.214 13 C 0.151 3.849 14 O -0.307 6.307 15 C -0.019 4.019 16 C -0.180 4.180 17 C -0.168 4.168 18 C 0.104 3.896 19 C 0.185 3.815 20 H 0.078 0.922 21 C -0.114 4.114 22 N -0.593 5.593 23 C -0.251 4.251 24 H 0.077 0.923 25 C -0.044 4.044 26 N -0.927 5.927 27 Si 0.962 3.038 28 H -0.289 1.289 29 H -0.267 1.267 30 H -0.302 1.302 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.144 0.856 37 H 0.166 0.834 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.077 0.923 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.015 0.985 48 H 0.026 0.974 49 H 0.046 0.954 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 7.992 21.692 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.042 3.958 3 H 0.024 0.976 4 C -0.027 4.027 5 N -0.321 5.321 6 C 0.348 3.652 7 O -0.468 6.468 8 C -0.193 4.193 9 C -0.075 4.075 10 C -0.171 4.171 11 C -0.068 4.068 12 C -0.232 4.232 13 C 0.104 3.896 14 O -0.220 6.220 15 C -0.074 4.074 16 C -0.217 4.217 17 C -0.205 4.205 18 C -0.020 4.020 19 C 0.077 3.923 20 H 0.095 0.905 21 C -0.173 4.173 22 N -0.317 5.317 23 C -0.381 4.381 24 H 0.094 0.906 25 C -0.239 4.239 26 N -0.573 5.573 27 Si 0.792 3.208 28 H -0.216 1.216 29 H -0.192 1.192 30 H -0.229 1.229 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.161 0.839 37 H 0.184 0.816 38 H 0.188 0.812 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.095 0.905 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.034 0.966 48 H 0.045 0.955 49 H 0.065 0.935 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.145 7.849 21.256 22.659 hybrid contribution 0.174 -0.409 -1.766 1.821 sum 0.029 7.440 19.491 20.862 Atomic orbital electron populations 1.21663 0.92969 1.02070 1.01500 1.21065 0.95032 0.92688 0.86979 0.97626 1.22737 0.78594 1.01546 0.99796 1.47964 1.08020 1.56097 1.19974 1.18652 0.85225 0.78543 0.82821 1.90689 1.17854 1.59608 1.78677 1.19273 1.03702 0.95734 1.00566 1.21343 0.92086 1.00219 0.93842 1.21411 1.02482 0.95533 0.97662 1.21589 0.92362 0.94882 0.97946 1.21501 1.02394 1.02568 0.96776 1.19219 0.87611 0.91699 0.91062 1.86108 1.46958 1.39628 1.49294 1.23522 0.98903 0.85407 0.99608 1.23530 1.01745 0.97770 0.98626 1.23440 0.90759 1.02277 1.03998 1.22174 0.98681 0.95636 0.85543 1.20521 0.83661 0.94082 0.94028 0.90461 1.21715 0.97330 0.99460 0.98811 1.44285 1.01456 1.64963 1.20966 1.19440 0.98794 1.34117 0.85732 0.90553 1.25960 0.98743 0.99962 0.99278 1.70106 1.22815 1.47812 1.16537 0.85345 0.79538 0.77252 0.78710 1.21596 1.19158 1.22925 0.92119 0.90397 0.93654 0.90272 0.87555 0.83863 0.81611 0.81243 0.82297 0.82695 0.90470 0.84388 0.84177 0.90284 0.91751 0.91567 0.96617 0.95525 0.93456 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.01 71.98 0.58 -3.60 16 2 C 0.15 5.99 3.25 45.18 0.15 6.14 16 3 H 0.01 0.27 7.38 -2.38 -0.02 0.25 16 4 C 0.10 3.26 5.03 86.56 0.44 3.70 16 5 N -0.59 -23.45 2.59 -820.92 -2.13 -25.57 16 6 C 0.56 22.77 6.87 86.70 0.60 23.36 16 7 O -0.59 -28.50 16.16 -0.27 0.00 -28.51 16 8 C -0.19 -6.08 4.94 -20.01 -0.10 -6.18 16 9 C -0.06 -1.30 7.39 22.52 0.17 -1.13 16 10 C -0.15 -2.38 10.02 22.24 0.22 -2.16 16 11 C -0.05 -0.71 10.03 22.30 0.22 -0.49 16 12 C -0.21 -4.21 9.10 22.34 0.20 -4.00 16 13 C 0.15 4.52 6.68 22.84 0.15 4.67 16 14 O -0.31 -10.48 9.57 -86.02 -0.82 -11.30 16 15 C -0.02 -0.44 6.09 30.59 0.19 -0.25 16 16 C -0.18 -3.70 10.48 30.62 0.32 -3.38 16 17 C -0.17 -3.47 10.48 30.62 0.32 -3.15 16 18 C 0.10 4.59 5.95 86.42 0.51 5.10 16 19 C 0.18 9.14 2.33 45.03 0.10 9.25 16 20 H 0.08 4.33 6.11 -2.39 -0.01 4.32 16 21 C -0.11 -5.77 8.91 71.98 0.64 -5.13 16 22 N -0.59 -28.76 2.67 -649.90 -1.73 -30.49 16 23 C -0.25 -12.94 8.32 84.03 0.70 -12.24 16 24 H 0.08 3.76 6.51 -2.91 -0.02 3.74 16 25 C -0.04 -2.35 5.16 84.86 0.44 -1.91 16 26 N -0.93 -53.34 9.76 21.65 0.21 -53.13 16 27 Si 0.96 43.90 29.56 68.60 2.03 45.92 16 28 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 31 H 0.06 1.95 7.60 -2.39 -0.02 1.93 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.73 7.47 -2.38 -0.02 1.71 16 34 H 0.08 2.47 8.11 -2.39 -0.02 2.45 16 35 H 0.11 2.99 4.60 -2.39 -0.01 2.98 16 36 H 0.14 2.93 7.29 -2.91 -0.02 2.91 16 37 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.16 2.15 5.67 -2.91 -0.02 2.13 16 40 H 0.16 2.36 5.55 -2.38 -0.01 2.34 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.14 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.14 1.85 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 46 H 0.07 3.07 7.00 -2.38 -0.02 3.06 16 47 H 0.01 0.76 7.00 -2.39 -0.02 0.74 16 48 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.05 2.62 7.06 -2.38 -0.02 2.60 16 50 H 0.25 13.95 8.32 -92.71 -0.77 13.18 16 Total: -1.00 -75.17 389.45 4.35 -70.82 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.95 Total: 23.67 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.85 Total: 8.59 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.65 Total: -109.20 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.83 Total: -39.81 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -75.17 4.35 -70.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880455012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.611 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds