Wall clock time and date at job start Wed Apr 1 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.20969 * 2 1 4 4 N 1.45652 * 109.21421 * 240.66571 * 2 1 3 5 5 C 1.33385 * 124.58791 * 261.56730 * 4 2 1 6 6 O 1.21275 * 118.48416 * 175.70597 * 5 4 2 7 7 C 1.50437 * 123.02230 * 355.68240 * 5 4 2 8 8 H 1.09001 * 109.56282 * 252.88682 * 7 5 4 9 9 C 1.52992 * 109.56801 * 132.65205 * 7 5 4 10 10 N 1.47049 * 108.89321 * 12.70831 * 7 5 4 11 11 C 1.34773 * 121.35615 * 137.28292 * 10 7 5 12 12 O 1.21286 * 119.99706 * 5.37140 * 11 10 7 13 13 C 1.50698 * 120.00479 * 185.36834 * 11 10 7 14 14 C 1.52997 * 109.47304 * 185.96866 * 13 11 10 15 15 H 1.09009 * 109.46971 * 304.99923 * 14 13 11 16 16 C 1.50694 * 109.47130 * 64.99913 * 14 13 11 17 17 H 1.08003 * 120.00274 * 25.70881 * 16 14 13 18 18 C 1.37876 * 119.99970 * 205.70795 * 16 14 13 19 19 N 1.31513 * 120.00138 * 5.34058 * 18 16 14 20 20 Si 1.86803 * 120.00161 * 185.34285 * 18 16 14 21 21 H 1.48506 * 109.46861 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47349 * 119.99768 * 20 18 16 23 23 H 1.48503 * 109.46991 * 240.00050 * 20 18 16 24 24 C 1.50701 * 109.46960 * 185.00280 * 14 13 11 25 25 C 1.38234 * 119.99855 * 303.47767 * 24 14 13 26 26 C 1.38240 * 120.00034 * 179.74705 * 25 24 14 27 27 C 1.38239 * 119.99603 * 0.52974 * 26 25 24 28 28 C 1.38235 * 119.99983 * 359.74585 * 27 26 25 29 29 C 1.38234 * 120.00400 * 359.97438 * 28 27 26 30 30 C 1.47273 * 117.29024 * 317.26256 * 10 7 5 31 31 H 1.09004 * 109.71659 * 181.17355 * 30 10 7 32 32 C 1.52998 * 109.75611 * 301.80817 * 30 10 7 33 33 H 1.08998 * 109.46928 * 300.61441 * 1 2 3 34 34 H 1.08994 * 109.47150 * 60.61834 * 1 2 3 35 35 H 1.09003 * 109.47277 * 180.61902 * 1 2 3 36 36 H 0.96999 * 117.70322 * 81.54402 * 4 2 1 37 37 H 1.09006 * 109.47251 * 50.00458 * 9 7 5 38 38 H 1.08997 * 109.47456 * 170.00653 * 9 7 5 39 39 H 1.09004 * 109.47419 * 290.00377 * 9 7 5 40 40 H 1.08999 * 109.46807 * 305.96854 * 13 11 10 41 41 H 1.09007 * 109.46779 * 65.96526 * 13 11 10 42 42 H 0.97006 * 120.00271 * 180.02562 * 19 18 16 43 43 H 1.08002 * 119.99992 * 359.97438 * 25 24 14 44 44 H 1.07995 * 120.00150 * 180.29487 * 26 25 24 45 45 H 1.07995 * 119.99857 * 179.76830 * 27 26 25 46 46 H 1.07996 * 119.99779 * 180.02562 * 28 27 26 47 47 H 1.07993 * 120.00286 * 179.97438 * 29 28 27 48 48 H 1.08998 * 109.46959 * 179.36783 * 32 30 10 49 49 H 1.09002 * 109.47106 * 299.36492 * 32 30 10 50 50 H 1.08992 * 109.47203 * 59.36692 * 32 30 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0292 0.0000 4 7 2.0094 -0.6738 -1.1990 5 6 2.4106 -1.9451 -1.2440 6 8 2.7145 -2.4180 -2.3186 7 6 2.5041 -2.8190 -0.0231 8 1 3.5515 -2.9721 0.2369 9 6 1.8440 -4.1695 -0.3078 10 7 1.8120 -2.1552 1.0917 11 6 1.0079 -2.8424 1.9268 12 8 0.9190 -4.0480 1.8277 13 6 0.2193 -2.1132 2.9838 14 6 -0.4886 -3.1284 3.8833 15 1 -1.0956 -3.7953 3.2709 16 6 0.5382 -3.9339 4.6368 17 1 1.5153 -3.5167 4.8313 18 6 0.2305 -5.2034 5.0778 19 7 -0.9193 -5.7522 4.7516 20 14 1.4465 -6.1439 6.1390 21 1 2.6562 -5.3118 6.3616 22 1 0.8185 -6.4648 7.4457 23 1 1.8320 -7.4031 5.4525 24 6 -1.3737 -2.4009 4.8623 25 6 -0.8354 -1.4424 5.7005 26 6 -1.6482 -0.7713 6.5949 27 6 -2.9972 -1.0665 6.6587 28 6 -3.5343 -2.0290 5.8245 29 6 -2.7227 -2.6960 4.9260 30 6 2.0336 -0.7088 1.2588 31 1 1.4824 -0.3503 2.1281 32 6 3.5269 -0.4325 1.4444 33 1 -0.3633 0.5233 0.8844 34 1 -0.3633 0.5042 -0.8954 35 1 -0.3634 -1.0276 0.0111 36 1 2.0385 -0.1622 -2.0226 37 1 2.2314 -4.5732 -1.2433 38 1 2.0652 -4.8607 0.5054 39 1 0.7651 -4.0368 -0.3885 40 1 0.8942 -1.5037 3.5848 41 1 -0.5217 -1.4718 2.5065 42 1 -1.1360 -6.6452 5.0622 43 1 0.2194 -1.2153 5.6540 44 1 -1.2286 -0.0192 7.2465 45 1 -3.6315 -0.5449 7.3601 46 1 -4.5883 -2.2593 5.8741 47 1 -3.1422 -3.4482 4.2746 48 1 3.6868 0.6399 1.5563 49 1 3.8837 -0.9480 2.3361 50 1 4.0741 -0.7924 0.5732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911807725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:16 Heat of formation + Delta-G solvation = -35.652666 kcal Electronic energy + Delta-G solvation = -32017.620755 eV Core-core repulsion = 28009.965349 eV Total energy + Delta-G solvation = -4007.655406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09060 -38.94710 -38.22146 -37.17333 -34.62461 -33.96864 -32.33814 -31.43190 -30.16818 -30.02991 -29.84388 -28.37256 -25.67197 -24.66202 -23.94944 -22.80998 -22.13782 -21.65570 -20.32748 -19.34747 -18.17212 -17.38869 -16.99171 -16.52538 -16.14013 -15.84416 -15.50827 -14.88148 -14.75330 -14.45365 -14.27157 -14.12855 -13.90068 -13.55999 -13.43325 -13.16392 -12.75047 -12.62560 -12.54561 -12.29684 -12.22223 -12.07759 -11.92354 -11.73532 -11.68969 -11.54945 -11.50837 -11.37679 -11.02539 -10.92688 -10.71064 -10.57572 -10.28709 -10.16408 -10.05715 -9.45716 -9.28070 -9.15008 -8.54220 -8.39990 -8.32257 -8.06813 -7.64409 -5.97521 -3.97717 2.26306 2.32095 2.54330 2.92786 3.24592 3.33681 3.37477 3.41901 3.42906 4.30826 4.39547 4.47548 4.72214 4.73810 4.80645 5.04135 5.07501 5.24210 5.34664 5.36298 5.42560 5.53043 5.58176 5.63544 5.64573 5.68837 5.71203 5.81374 5.95959 5.98141 6.01475 6.08738 6.11570 6.23919 6.29403 6.38738 6.43107 6.50204 6.67840 6.73353 6.84401 6.89355 7.00740 7.17908 7.29053 7.40725 7.51281 7.78220 7.85121 7.91567 8.03018 8.10780 8.32319 8.92082 9.02060 9.63974 11.11915 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.004318 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.184417 B = 6482.423397 C = 7973.678956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 H 0.094 0.906 4 N -0.712 5.712 5 C 0.517 3.483 6 O -0.550 6.550 7 C 0.138 3.862 8 H 0.096 0.904 9 C -0.136 4.136 10 N -0.626 5.626 11 C 0.524 3.476 12 O -0.480 6.480 13 C -0.121 4.121 14 C 0.080 3.920 15 H 0.071 0.929 16 C -0.493 4.493 17 H 0.051 0.949 18 C 0.076 3.924 19 N -0.877 5.877 20 Si 0.884 3.116 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.021 4.021 25 C -0.120 4.120 26 C -0.132 4.132 27 C -0.156 4.156 28 C -0.128 4.128 29 C -0.113 4.113 30 C 0.125 3.875 31 H 0.115 0.885 32 C -0.164 4.164 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.259 0.741 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.116 0.884 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 15.394 -5.892 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 H 0.112 0.888 4 N -0.364 5.364 5 C 0.304 3.696 6 O -0.427 6.427 7 C 0.032 3.968 8 H 0.113 0.887 9 C -0.193 4.193 10 N -0.367 5.367 11 C 0.313 3.687 12 O -0.350 6.350 13 C -0.161 4.161 14 C 0.062 3.938 15 H 0.089 0.911 16 C -0.531 4.531 17 H 0.069 0.931 18 C -0.127 4.127 19 N -0.514 5.514 20 Si 0.712 3.288 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.022 4.022 25 C -0.138 4.138 26 C -0.150 4.150 27 C -0.174 4.174 28 C -0.146 4.146 29 C -0.131 4.131 30 C 0.020 3.980 31 H 0.133 0.867 32 C -0.222 4.222 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.230 0.770 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.129 0.871 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.134 0.866 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.863 14.098 -6.244 15.682 hybrid contribution 0.657 -0.189 0.565 0.887 sum 3.520 13.909 -5.679 15.431 Atomic orbital electron populations 1.22305 0.94474 1.03443 1.02592 1.21400 0.95007 0.96434 0.85026 0.88826 1.45469 1.66041 1.12232 1.12647 1.20596 0.75666 0.82177 0.91202 1.90743 1.50046 1.72061 1.29874 1.21162 0.98772 0.93668 0.83205 0.88662 1.22082 1.00741 0.93813 1.02679 1.48613 1.49431 1.07977 1.30637 1.20885 0.78603 0.88143 0.81105 1.90764 1.62630 1.13541 1.68106 1.21854 0.98495 0.99726 0.95988 1.17827 0.93968 0.90898 0.91153 0.91091 1.20715 0.97671 0.98985 1.35693 0.93071 1.24819 0.95038 0.97146 0.95698 1.69912 1.22337 1.15212 1.43964 0.86672 0.81560 0.80177 0.80359 1.19944 1.21208 1.21104 1.20706 0.93256 0.91451 0.96806 1.20916 0.98906 0.97356 0.96607 1.20953 0.94043 1.00572 0.99453 1.20795 0.95385 1.00300 1.00905 1.21002 0.98954 0.97454 0.97234 1.21097 0.93856 0.98969 0.99173 1.21615 0.97325 0.81395 0.97626 0.86695 1.22152 0.94950 1.02231 1.02908 0.90816 0.92159 0.91685 0.76962 0.92408 0.88220 0.92056 0.90599 0.91385 0.93139 0.87079 0.87722 0.87860 0.87686 0.86630 0.91129 0.91138 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.38 37.16 0.35 -1.15 16 2 C 0.13 1.06 3.23 -68.39 -0.22 0.84 16 3 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 4 N -0.71 -7.34 4.90 -54.78 -0.27 -7.61 16 5 C 0.52 7.23 6.81 -11.73 -0.08 7.15 16 6 O -0.55 -9.45 17.00 5.56 0.09 -9.35 16 7 C 0.14 2.03 2.88 -68.91 -0.20 1.83 16 8 H 0.10 1.33 7.83 -51.93 -0.41 0.92 16 9 C -0.14 -2.29 7.63 37.15 0.28 -2.00 16 10 N -0.63 -8.87 2.51 -159.06 -0.40 -9.27 16 11 C 0.52 9.54 7.08 -10.99 -0.08 9.47 16 12 O -0.48 -10.90 11.32 5.55 0.06 -10.84 16 13 C -0.12 -2.11 3.42 -27.89 -0.10 -2.20 16 14 C 0.08 1.80 1.62 -92.93 -0.15 1.65 16 15 H 0.07 1.86 6.98 -51.92 -0.36 1.50 16 16 C -0.49 -12.60 6.76 -34.44 -0.23 -12.84 16 17 H 0.05 1.31 7.82 -52.48 -0.41 0.90 16 18 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 19 N -0.88 -24.93 12.91 55.43 0.72 -24.21 16 20 Si 0.88 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 25 C -0.12 -2.24 8.92 -39.58 -0.35 -2.60 16 26 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 27 C -0.16 -2.60 10.05 -39.58 -0.40 -3.00 16 28 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 29 C -0.11 -2.32 9.67 -39.58 -0.38 -2.70 16 30 C 0.13 1.26 2.53 -67.52 -0.17 1.09 16 31 H 0.12 1.07 5.87 -51.93 -0.30 0.76 16 32 C -0.16 -1.44 9.04 37.16 0.34 -1.10 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.77 7.97 -51.93 -0.41 0.35 16 36 H 0.40 3.48 8.80 -40.82 -0.36 3.12 16 37 H 0.06 0.93 7.56 -51.93 -0.39 0.54 16 38 H 0.10 1.88 6.39 -51.93 -0.33 1.55 16 39 H 0.06 1.12 7.40 -51.93 -0.38 0.73 16 40 H 0.08 1.20 6.53 -51.93 -0.34 0.86 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.11 1.95 7.44 -52.49 -0.39 1.56 16 44 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.10 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.12 2.47 7.95 -52.49 -0.42 2.05 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.54 6.80 -51.93 -0.35 0.18 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -32.27 395.42 -9.44 -41.71 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.80 Total: 6.90 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.78 Total: -9.83 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.05 Total: -41.09 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.16 Total: -20.19 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.27 -9.44 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911807725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.055 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds