Wall clock time and date at job start Wed Apr 1 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.20969 * 2 1 4 4 N 1.45652 * 109.21421 * 240.66571 * 2 1 3 5 5 C 1.33385 * 124.58791 * 261.56730 * 4 2 1 6 6 O 1.21275 * 118.48416 * 175.70597 * 5 4 2 7 7 C 1.50437 * 123.02230 * 355.68240 * 5 4 2 8 8 H 1.09001 * 109.56282 * 252.88682 * 7 5 4 9 9 C 1.52992 * 109.56801 * 132.65205 * 7 5 4 10 10 N 1.47049 * 108.89321 * 12.70831 * 7 5 4 11 11 C 1.34773 * 121.35615 * 137.28292 * 10 7 5 12 12 O 1.21286 * 119.99706 * 5.37140 * 11 10 7 13 13 C 1.50698 * 120.00479 * 185.36834 * 11 10 7 14 14 C 1.52997 * 109.47304 * 185.96866 * 13 11 10 15 15 H 1.09009 * 109.46971 * 304.99923 * 14 13 11 16 16 C 1.50694 * 109.47130 * 64.99913 * 14 13 11 17 17 H 1.08003 * 120.00274 * 25.70881 * 16 14 13 18 18 C 1.37876 * 119.99970 * 205.70795 * 16 14 13 19 19 N 1.31513 * 120.00138 * 5.34058 * 18 16 14 20 20 Si 1.86803 * 120.00161 * 185.34285 * 18 16 14 21 21 H 1.48506 * 109.46861 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47349 * 119.99768 * 20 18 16 23 23 H 1.48503 * 109.46991 * 240.00050 * 20 18 16 24 24 C 1.50701 * 109.46960 * 185.00280 * 14 13 11 25 25 C 1.38234 * 119.99855 * 303.47767 * 24 14 13 26 26 C 1.38240 * 120.00034 * 179.74705 * 25 24 14 27 27 C 1.38239 * 119.99603 * 0.52974 * 26 25 24 28 28 C 1.38235 * 119.99983 * 359.74585 * 27 26 25 29 29 C 1.38234 * 120.00400 * 359.97438 * 28 27 26 30 30 C 1.47273 * 117.29024 * 317.26256 * 10 7 5 31 31 H 1.09004 * 109.71659 * 181.17355 * 30 10 7 32 32 C 1.52998 * 109.75611 * 301.80817 * 30 10 7 33 33 H 1.08998 * 109.46928 * 300.61441 * 1 2 3 34 34 H 1.08994 * 109.47150 * 60.61834 * 1 2 3 35 35 H 1.09003 * 109.47277 * 180.61902 * 1 2 3 36 36 H 0.96999 * 117.70322 * 81.54402 * 4 2 1 37 37 H 1.09006 * 109.47251 * 50.00458 * 9 7 5 38 38 H 1.08997 * 109.47456 * 170.00653 * 9 7 5 39 39 H 1.09004 * 109.47419 * 290.00377 * 9 7 5 40 40 H 1.08999 * 109.46807 * 305.96854 * 13 11 10 41 41 H 1.09007 * 109.46779 * 65.96526 * 13 11 10 42 42 H 0.97006 * 120.00271 * 180.02562 * 19 18 16 43 43 H 1.08002 * 119.99992 * 359.97438 * 25 24 14 44 44 H 1.07995 * 120.00150 * 180.29487 * 26 25 24 45 45 H 1.07995 * 119.99857 * 179.76830 * 27 26 25 46 46 H 1.07996 * 119.99779 * 180.02562 * 28 27 26 47 47 H 1.07993 * 120.00286 * 179.97438 * 29 28 27 48 48 H 1.08998 * 109.46959 * 179.36783 * 32 30 10 49 49 H 1.09002 * 109.47106 * 299.36492 * 32 30 10 50 50 H 1.08992 * 109.47203 * 59.36692 * 32 30 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0292 0.0000 4 7 2.0094 -0.6738 -1.1990 5 6 2.4106 -1.9451 -1.2440 6 8 2.7145 -2.4180 -2.3186 7 6 2.5041 -2.8190 -0.0231 8 1 3.5515 -2.9721 0.2369 9 6 1.8440 -4.1695 -0.3078 10 7 1.8120 -2.1552 1.0917 11 6 1.0079 -2.8424 1.9268 12 8 0.9190 -4.0480 1.8277 13 6 0.2193 -2.1132 2.9838 14 6 -0.4886 -3.1284 3.8833 15 1 -1.0956 -3.7953 3.2709 16 6 0.5382 -3.9339 4.6368 17 1 1.5153 -3.5167 4.8313 18 6 0.2305 -5.2034 5.0778 19 7 -0.9193 -5.7522 4.7516 20 14 1.4465 -6.1439 6.1390 21 1 2.6562 -5.3118 6.3616 22 1 0.8185 -6.4648 7.4457 23 1 1.8320 -7.4031 5.4525 24 6 -1.3737 -2.4009 4.8623 25 6 -0.8354 -1.4424 5.7005 26 6 -1.6482 -0.7713 6.5949 27 6 -2.9972 -1.0665 6.6587 28 6 -3.5343 -2.0290 5.8245 29 6 -2.7227 -2.6960 4.9260 30 6 2.0336 -0.7088 1.2588 31 1 1.4824 -0.3503 2.1281 32 6 3.5269 -0.4325 1.4444 33 1 -0.3633 0.5233 0.8844 34 1 -0.3633 0.5042 -0.8954 35 1 -0.3634 -1.0276 0.0111 36 1 2.0385 -0.1622 -2.0226 37 1 2.2314 -4.5732 -1.2433 38 1 2.0652 -4.8607 0.5054 39 1 0.7651 -4.0368 -0.3885 40 1 0.8942 -1.5037 3.5848 41 1 -0.5217 -1.4718 2.5065 42 1 -1.1360 -6.6452 5.0622 43 1 0.2194 -1.2153 5.6540 44 1 -1.2286 -0.0192 7.2465 45 1 -3.6315 -0.5449 7.3601 46 1 -4.5883 -2.2593 5.8741 47 1 -3.1422 -3.4482 4.2746 48 1 3.6868 0.6399 1.5563 49 1 3.8837 -0.9480 2.3361 50 1 4.0741 -0.7924 0.5732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911807725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:15 Heat of formation + Delta-G solvation = -55.660866 kcal Electronic energy + Delta-G solvation = -32018.488376 eV Core-core repulsion = 28009.965349 eV Total energy + Delta-G solvation = -4008.523027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21574 -40.33268 -39.62213 -38.27541 -36.05437 -35.38127 -33.74357 -33.02437 -31.46437 -31.28019 -30.75478 -29.76104 -27.44375 -25.97363 -24.82707 -24.30855 -23.17302 -23.07487 -21.68633 -20.77484 -19.24910 -18.61063 -18.32852 -18.16752 -17.42541 -17.02582 -16.82764 -16.47357 -16.09425 -15.80686 -15.50780 -15.34736 -15.28631 -14.67538 -14.62931 -14.46196 -14.08810 -13.95115 -13.68816 -13.60720 -13.46602 -13.36739 -13.28098 -13.08493 -13.02778 -12.87958 -12.73986 -12.54398 -12.52748 -12.40330 -12.15366 -11.91300 -11.79681 -11.64593 -11.36676 -11.21406 -10.93230 -10.46170 -10.20228 -10.00090 -9.56729 -9.49356 -9.15395 -8.01868 -6.05000 0.82599 0.88553 1.36588 1.39689 1.41092 1.46850 1.83445 1.93501 2.24333 2.46886 3.22054 3.36776 3.39092 3.52518 3.76628 3.95624 4.02741 4.16836 4.22595 4.27312 4.39459 4.40071 4.43036 4.45001 4.58923 4.64780 4.66208 4.76122 4.82648 4.85695 4.88116 4.92400 4.93333 4.98073 5.05112 5.20656 5.25271 5.30578 5.36294 5.43144 5.52033 5.56453 5.71239 5.81218 5.82479 5.88560 6.00021 6.17345 6.22857 6.42978 6.50297 6.53814 7.04259 7.07837 7.52627 7.58221 9.06840 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.004318 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.184417 B = 6482.423397 C = 7973.678956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 H 0.145 0.855 4 N -0.696 5.696 5 C 0.522 3.478 6 O -0.587 6.587 7 C 0.137 3.863 8 H 0.105 0.895 9 C -0.123 4.123 10 N -0.616 5.616 11 C 0.520 3.480 12 O -0.540 6.540 13 C -0.109 4.109 14 C 0.084 3.916 15 H 0.018 0.982 16 C -0.481 4.481 17 H 0.050 0.950 18 C 0.021 3.979 19 N -0.914 5.914 20 Si 0.931 3.069 21 H -0.262 1.262 22 H -0.284 1.284 23 H -0.295 1.295 24 C -0.043 4.043 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.149 4.149 28 C -0.132 4.132 29 C -0.140 4.140 30 C 0.113 3.887 31 H 0.131 0.869 32 C -0.159 4.159 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.408 0.592 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.252 0.748 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.125 0.875 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.057 0.943 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 20.388 -4.458 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 H 0.162 0.838 4 N -0.346 5.346 5 C 0.307 3.693 6 O -0.467 6.467 7 C 0.030 3.970 8 H 0.122 0.878 9 C -0.181 4.181 10 N -0.355 5.355 11 C 0.310 3.690 12 O -0.414 6.414 13 C -0.149 4.149 14 C 0.065 3.935 15 H 0.036 0.964 16 C -0.519 4.519 17 H 0.068 0.932 18 C -0.178 4.178 19 N -0.554 5.554 20 Si 0.758 3.242 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.222 1.222 24 C -0.044 4.044 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.166 4.166 28 C -0.150 4.150 29 C -0.158 4.158 30 C 0.011 3.989 31 H 0.148 0.852 32 C -0.217 4.217 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.245 0.755 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.061 0.939 43 H 0.142 0.858 44 H 0.161 0.839 45 H 0.158 0.842 46 H 0.143 0.857 47 H 0.105 0.895 48 H 0.126 0.874 49 H 0.076 0.924 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.751 19.199 -4.805 20.144 hybrid contribution 0.329 -1.609 0.109 1.646 sum 4.080 17.590 -4.696 18.658 Atomic orbital electron populations 1.22323 0.94663 1.01488 1.04323 1.21674 0.94729 0.98163 0.83009 0.83802 1.45379 1.64178 1.10924 1.14143 1.20283 0.75853 0.83184 0.89958 1.90730 1.52132 1.73119 1.30734 1.21082 0.98862 0.92903 0.84115 0.87788 1.21831 0.99427 0.95155 1.01668 1.48514 1.47844 1.09867 1.29262 1.21079 0.78822 0.87583 0.81533 1.90764 1.64673 1.16050 1.69948 1.21700 0.99047 0.98717 0.95451 1.17590 0.93208 0.91383 0.91364 0.96365 1.21033 0.98022 0.98972 1.33920 0.93182 1.25486 0.96307 0.98545 0.97425 1.70067 1.24130 1.15176 1.46030 0.85926 0.80402 0.78882 0.78959 1.18613 1.21065 1.22235 1.20514 0.93208 0.93154 0.97511 1.21062 0.99848 0.96920 0.96535 1.21374 0.93895 1.00306 0.98641 1.21245 0.95986 0.99137 1.00280 1.21250 0.99778 0.97366 0.96603 1.21048 0.94645 0.99633 1.00490 1.22096 0.99017 0.78455 0.99371 0.85152 1.22142 0.93175 1.04456 1.01948 0.88891 0.90748 0.95435 0.75490 0.92148 0.90833 0.94297 0.87992 0.88960 0.93935 0.85827 0.83891 0.84152 0.85710 0.89546 0.87446 0.92386 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.38 71.98 0.67 -1.80 16 2 C 0.13 1.63 3.23 45.15 0.15 1.78 16 3 H 0.14 0.61 8.08 -2.39 -0.02 0.59 16 4 N -0.70 -12.53 4.90 -446.41 -2.19 -14.72 16 5 C 0.52 14.24 6.81 87.79 0.60 14.84 16 6 O -0.59 -20.18 17.00 -3.01 -0.05 -20.23 16 7 C 0.14 4.10 2.88 44.06 0.13 4.22 16 8 H 0.10 2.93 7.83 -2.39 -0.02 2.91 16 9 C -0.12 -4.50 7.63 71.98 0.55 -3.95 16 10 N -0.62 -17.23 2.51 -775.55 -1.94 -19.17 16 11 C 0.52 19.54 7.08 87.66 0.62 20.16 16 12 O -0.54 -26.37 11.32 -3.05 -0.03 -26.40 16 13 C -0.11 -3.80 3.42 29.85 0.10 -3.69 16 14 C 0.08 3.89 1.62 -12.29 -0.02 3.87 16 15 H 0.02 1.03 6.98 -2.38 -0.02 1.01 16 16 C -0.48 -25.31 6.76 25.60 0.17 -25.13 16 17 H 0.05 2.58 7.82 -2.91 -0.02 2.55 16 18 C 0.02 1.20 5.45 84.65 0.46 1.66 16 19 N -0.91 -55.29 12.91 21.45 0.28 -55.01 16 20 Si 0.93 45.58 29.54 68.60 2.03 47.60 16 21 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 24 C -0.04 -1.82 4.77 -19.86 -0.09 -1.91 16 25 C -0.13 -4.40 8.92 22.27 0.20 -4.20 16 26 C -0.12 -3.66 10.05 22.27 0.22 -3.43 16 27 C -0.15 -4.37 10.05 22.27 0.22 -4.15 16 28 C -0.13 -4.55 10.05 22.27 0.22 -4.32 16 29 C -0.14 -5.91 9.67 22.27 0.22 -5.69 16 30 C 0.11 1.92 2.53 44.84 0.11 2.04 16 31 H 0.13 1.86 5.87 -2.39 -0.01 1.85 16 32 C -0.16 -2.20 9.04 71.98 0.65 -1.55 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.03 0.61 7.97 -2.39 -0.02 0.59 16 36 H 0.41 5.90 8.80 -92.71 -0.82 5.09 16 37 H 0.06 2.10 7.56 -2.38 -0.02 2.08 16 38 H 0.07 3.07 6.39 -2.39 -0.02 3.05 16 39 H 0.04 1.55 7.40 -2.39 -0.02 1.53 16 40 H 0.10 2.98 6.53 -2.39 -0.02 2.96 16 41 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 42 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 43 H 0.12 3.94 7.44 -2.91 -0.02 3.91 16 44 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 45 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 46 H 0.12 3.69 8.06 -2.91 -0.02 3.66 16 47 H 0.09 4.03 7.95 -2.91 -0.02 4.01 16 48 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.05 0.77 6.80 -2.39 -0.02 0.75 16 Total: -1.00 -78.04 395.42 3.40 -74.64 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.13 Total: 24.55 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 5.19 Total: -11.25 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -3.86 Total: -88.90 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.09 Total: -46.63 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -78.04 3.40 -74.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911807725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.979 kcal (2) G-P(sol) polarization free energy of solvation -78.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds