Wall clock time and date at job start Wed Apr 1 2020 03:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.64466 * 2 1 4 4 C 1.54323 * 110.72060 * 123.14102 * 2 1 3 5 5 N 1.47020 * 107.27460 * 140.73364 * 4 2 1 6 6 C 1.34773 * 125.65382 * 181.02260 * 5 4 2 7 7 O 1.21589 * 119.99851 * 355.03126 * 6 5 4 8 8 C 1.47542 * 120.00418 * 175.02736 * 6 5 4 9 9 C 1.39703 * 120.18855 * 45.08245 * 8 6 5 10 10 C 1.37790 * 119.90760 * 180.25507 * 9 8 6 11 11 C 1.38545 * 120.29677 * 359.76788 * 10 9 8 12 12 C 1.38057 * 120.39525 * 0.02562 * 11 10 9 13 13 C 1.38709 * 120.07886 * 359.97180 * 12 11 10 14 14 O 1.35661 * 120.14927 * 179.97438 * 13 12 11 15 15 C 1.42897 * 116.99642 * 354.21166 * 14 13 12 16 16 C 1.53784 * 113.61575 * 105.96502 * 15 14 13 17 17 C 1.53778 * 87.08214 * 89.11423 * 16 15 14 18 18 C 1.53784 * 113.61508 * 203.46173 * 15 14 13 19 19 C 1.47426 * 108.70221 * 1.28539 * 5 4 2 20 20 C 1.55133 * 104.72098 * 335.55799 * 19 5 4 21 21 H 1.08998 * 110.93850 * 155.28661 * 20 19 5 22 22 N 1.46502 * 111.18972 * 279.18615 * 20 19 5 23 23 C 1.36936 * 120.00126 * 267.18921 * 22 20 19 24 24 H 1.08001 * 120.00141 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00139 * 180.02562 * 23 22 20 26 26 N 1.31618 * 119.99656 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99834 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47302 * 60.00043 * 27 25 23 29 29 H 1.48504 * 109.46842 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47109 * 299.99390 * 27 25 23 31 31 H 1.08996 * 109.47007 * 298.30824 * 1 2 3 32 32 H 1.08998 * 109.46752 * 58.31161 * 1 2 3 33 33 H 1.09001 * 109.46972 * 178.31274 * 1 2 3 34 34 H 1.09004 * 109.87964 * 21.31771 * 4 2 1 35 35 H 1.09001 * 110.01456 * 260.22323 * 4 2 1 36 36 H 1.08000 * 120.05066 * 0.02562 * 9 8 6 37 37 H 1.07995 * 119.85319 * 179.74987 * 10 9 8 38 38 H 1.08007 * 119.80291 * 180.02562 * 11 10 9 39 39 H 1.08000 * 119.96128 * 179.97438 * 12 11 10 40 40 H 1.08998 * 112.91191 * 334.71152 * 15 14 13 41 41 H 1.09002 * 113.61423 * 203.66774 * 16 15 14 42 42 H 1.09004 * 113.61101 * 334.56434 * 16 15 14 43 43 H 1.09002 * 113.61329 * 270.88774 * 17 16 15 44 44 H 1.08997 * 113.61201 * 139.98271 * 17 16 15 45 45 H 1.09001 * 113.61312 * 25.42708 * 18 15 14 46 46 H 1.08998 * 113.61838 * 156.25781 * 18 15 14 47 47 H 1.09001 * 110.36434 * 94.47924 * 19 5 4 48 48 H 1.08999 * 110.37202 * 216.80231 * 19 5 4 49 49 H 0.96998 * 120.00023 * 87.18819 * 22 20 19 50 50 H 0.97001 * 119.99596 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 3.2471 -1.5461 0.7427 6 6 3.9957 -2.3767 1.4951 7 8 3.7772 -2.4807 2.6867 8 6 5.0803 -3.1599 0.8730 9 6 5.9610 -2.5508 -0.0244 10 6 6.9686 -3.2890 -0.6061 11 6 7.1160 -4.6325 -0.3016 12 6 6.2553 -5.2459 0.5867 13 6 5.2354 -4.5180 1.1816 14 8 4.3886 -5.1194 2.0543 15 6 4.5232 -6.5324 2.2195 16 6 5.1803 -6.9373 3.5497 17 6 3.7665 -6.9475 4.1545 18 6 3.2455 -7.2171 2.7329 19 6 3.4707 -1.2414 -0.6822 20 6 2.0828 -0.7948 -1.2124 21 1 2.1881 -0.1517 -2.0860 22 7 1.2342 -1.9504 -1.5137 23 6 1.2125 -2.4725 -2.7795 24 1 1.8207 -2.0321 -3.5558 25 6 0.4081 -3.5671 -3.0651 26 7 -0.3334 -4.1035 -2.1192 27 14 0.3791 -4.2796 -4.7917 28 1 1.7441 -4.7307 -5.1641 29 1 -0.5534 -5.4346 -4.8349 30 1 -0.0771 -3.2398 -5.7487 31 1 -0.3633 0.4873 0.9047 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3633 -1.0272 -0.0303 34 1 1.3140 -1.4754 1.5781 35 1 2.3707 -0.1011 2.0010 36 1 5.8499 -1.5038 -0.2647 37 1 7.6464 -2.8182 -1.3027 38 1 7.9089 -5.2034 -0.7619 39 1 6.3764 -6.2937 0.8187 40 1 4.9612 -7.0215 1.3495 41 1 5.6509 -7.9201 3.5228 42 1 5.8288 -6.1676 3.9684 43 1 3.4570 -5.9831 4.5574 44 1 3.5936 -7.7717 4.8464 45 1 2.3319 -6.6733 2.4923 46 1 3.1864 -8.2760 2.4817 47 1 4.1970 -0.4355 -0.7883 48 1 3.8103 -2.1314 -1.2119 49 1 0.6878 -2.3458 -0.8166 50 1 -0.8958 -4.8682 -2.3189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939119400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:51 Heat of formation + Delta-G solvation = -17.617711 kcal Electronic energy + Delta-G solvation = -31453.167909 eV Core-core repulsion = 27446.294557 eV Total energy + Delta-G solvation = -4006.873352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.85189 -40.90750 -39.43816 -38.63215 -37.09739 -35.64851 -34.03078 -32.48018 -31.91525 -30.90166 -29.36060 -27.57263 -26.71838 -26.56269 -25.82523 -24.73023 -23.42933 -23.08367 -20.93510 -20.65600 -20.54978 -19.42281 -18.84846 -18.08079 -17.46396 -17.17828 -16.76458 -16.52449 -16.39484 -16.16795 -15.68564 -15.56754 -15.40913 -15.20708 -14.97290 -14.64739 -14.40678 -14.03610 -13.89279 -13.63519 -13.53673 -13.41429 -13.27258 -13.01131 -12.89557 -12.79995 -12.69888 -12.41346 -12.29759 -12.26277 -12.19488 -11.94735 -11.82369 -11.49418 -11.39352 -11.32798 -11.23654 -11.01591 -10.85412 -10.02150 -9.68970 -9.21601 -8.93586 -7.90744 -5.18958 -0.00611 0.39978 1.47933 1.50475 1.56104 1.66916 2.07314 2.10441 2.57848 2.77706 3.39421 3.43206 3.49397 3.49747 3.75158 3.77020 3.81015 3.87052 3.93321 3.95072 4.03900 4.09468 4.14150 4.37851 4.41026 4.47049 4.55128 4.62038 4.65811 4.66593 4.71608 4.73105 4.82763 4.88120 4.91503 4.95231 4.96245 4.99774 5.03544 5.18819 5.21366 5.25935 5.29825 5.33290 5.43695 5.45474 5.53808 5.60373 5.80125 6.29365 6.40518 6.55457 7.13439 7.36286 8.11951 8.34551 9.32693 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008384 B = 0.004179 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.026726 B = 6698.374224 C = 7392.039224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.122 0.878 4 C 0.116 3.884 5 N -0.601 5.601 6 C 0.571 3.429 7 O -0.584 6.584 8 C -0.191 4.191 9 C -0.052 4.052 10 C -0.160 4.160 11 C -0.053 4.053 12 C -0.221 4.221 13 C 0.150 3.850 14 O -0.309 6.309 15 C 0.032 3.968 16 C -0.140 4.140 17 C -0.134 4.134 18 C -0.140 4.140 19 C 0.076 3.924 20 C 0.159 3.841 21 H 0.093 0.907 22 N -0.720 5.720 23 C -0.233 4.233 24 H 0.085 0.915 25 C -0.076 4.076 26 N -0.972 5.972 27 Si 0.968 3.032 28 H -0.278 1.278 29 H -0.304 1.304 30 H -0.274 1.274 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.148 0.852 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.102 0.898 41 H 0.129 0.871 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.045 0.955 46 H 0.129 0.871 47 H 0.100 0.900 48 H 0.061 0.939 49 H 0.370 0.630 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.477 0.348 5.019 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.140 0.860 4 C -0.007 4.007 5 N -0.333 5.333 6 C 0.361 3.639 7 O -0.466 6.466 8 C -0.195 4.195 9 C -0.071 4.071 10 C -0.178 4.178 11 C -0.071 4.071 12 C -0.239 4.239 13 C 0.103 3.897 14 O -0.222 6.222 15 C -0.024 4.024 16 C -0.177 4.177 17 C -0.172 4.172 18 C -0.178 4.178 19 C -0.049 4.049 20 C 0.049 3.951 21 H 0.111 0.889 22 N -0.359 5.359 23 C -0.365 4.365 24 H 0.103 0.897 25 C -0.267 4.267 26 N -0.623 5.623 27 Si 0.798 3.202 28 H -0.205 1.205 29 H -0.231 1.231 30 H -0.200 1.200 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.172 0.828 40 H 0.119 0.881 41 H 0.147 0.853 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.064 0.936 46 H 0.147 0.853 47 H 0.118 0.882 48 H 0.080 0.920 49 H 0.203 0.797 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.243 0.312 5.613 17.188 hybrid contribution -0.950 -0.961 -0.338 1.393 sum 15.293 -0.649 5.275 16.190 Atomic orbital electron populations 1.21524 0.93944 1.01047 1.01877 1.22527 0.96616 0.99781 0.92830 0.86037 1.21997 0.86741 0.94047 0.97882 1.48324 1.28970 1.43607 1.12381 1.18166 0.81888 0.78467 0.85378 1.90697 1.72015 1.67295 1.16610 1.19321 1.01367 0.92906 1.05911 1.21443 0.92824 1.00967 0.91816 1.21414 0.99485 0.94648 1.02247 1.21578 0.97135 0.94954 0.93420 1.21505 0.97533 1.01676 1.03193 1.19321 0.89890 0.91409 0.89036 1.86177 1.55005 1.23331 1.57725 1.23824 1.00221 0.78512 0.99794 1.23409 0.96862 1.03298 0.94137 1.22759 0.96290 1.01820 0.96296 1.23247 0.95962 1.01605 0.96951 1.23522 1.00943 1.00919 0.79528 1.21736 0.88502 0.88741 0.96145 0.88930 1.42533 1.50348 1.33882 1.09092 1.19649 1.19520 1.08812 0.88517 0.89686 1.25515 1.00299 0.99988 1.00943 1.69848 1.32440 1.26229 1.33783 0.85289 0.77077 0.77471 0.80405 1.20464 1.23076 1.20012 0.91395 0.91893 0.95119 0.94901 0.90786 0.83444 0.81707 0.81504 0.82760 0.88057 0.85288 0.91795 0.92664 0.88611 0.93585 0.85340 0.88233 0.92041 0.79694 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 8.81 71.98 0.63 -3.43 16 2 C -0.10 -2.97 3.40 -9.61 -0.03 -3.00 16 3 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 4 C 0.12 4.11 6.46 86.73 0.56 4.67 16 5 N -0.60 -22.77 3.32 -815.09 -2.71 -25.48 16 6 C 0.57 24.18 7.19 86.70 0.62 24.80 16 7 O -0.58 -28.80 16.69 8.32 0.14 -28.66 16 8 C -0.19 -6.99 5.31 -20.01 -0.11 -7.10 16 9 C -0.05 -1.43 8.03 22.52 0.18 -1.25 16 10 C -0.16 -3.37 10.02 22.24 0.22 -3.14 16 11 C -0.05 -1.08 10.03 22.30 0.22 -0.86 16 12 C -0.22 -5.72 9.01 22.34 0.20 -5.52 16 13 C 0.15 5.32 6.66 22.84 0.15 5.48 16 14 O -0.31 -11.94 8.99 -77.45 -0.70 -12.63 16 15 C 0.03 0.90 3.75 31.12 0.12 1.02 16 16 C -0.14 -3.00 7.91 31.12 0.25 -2.76 16 17 C -0.13 -3.25 8.02 31.12 0.25 -3.00 16 18 C -0.14 -3.72 7.91 31.12 0.25 -3.47 16 19 C 0.08 2.50 5.04 86.93 0.44 2.94 16 20 C 0.16 5.69 3.47 46.46 0.16 5.85 16 21 H 0.09 3.00 8.09 -2.39 -0.02 2.98 16 22 N -0.72 -34.74 4.58 -316.01 -1.45 -36.18 16 23 C -0.23 -12.32 9.96 84.03 0.84 -11.48 16 24 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 25 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 26 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 27 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 28 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 29 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 30 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.03 1.24 6.36 -2.39 -0.02 1.22 16 34 H 0.03 1.37 7.82 -2.39 -0.02 1.35 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.15 3.41 6.33 -2.91 -0.02 3.39 16 37 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.15 3.14 5.92 -2.91 -0.02 3.12 16 40 H 0.10 2.36 5.96 -2.39 -0.01 2.34 16 41 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.10 2.43 7.42 -2.39 -0.02 2.41 16 48 H 0.06 2.32 6.89 -2.39 -0.02 2.30 16 49 H 0.37 20.32 6.34 -92.71 -0.59 19.73 16 50 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -79.28 398.79 3.38 -75.90 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: 0.36 Total: 43.51 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 5.42 Total: -4.05 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -3.87 Total: -121.57 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.56 Total: -41.29 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -79.28 3.38 -75.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939119400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.281 kcal (2) G-P(sol) polarization free energy of solvation -79.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds