Wall clock time and date at job start Wed Apr 1 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99662 * 2 1 4 4 C 1.38752 * 120.05934 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.94591 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05489 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.11405 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.97693 * 179.97438 * 7 6 5 9 9 C 1.50698 * 115.55348 * 150.45481 * 8 7 6 10 10 O 1.21286 * 119.99442 * 90.55464 * 9 8 7 11 11 N 1.34779 * 120.00612 * 270.55795 * 9 8 7 12 12 C 1.47015 * 125.64749 * 185.63769 * 11 9 8 13 13 C 1.54322 * 107.26671 * 178.98481 * 12 11 9 14 14 H 1.09004 * 110.72182 * 96.17371 * 13 12 11 15 15 C 1.53002 * 110.87304 * 219.37075 * 13 12 11 16 16 C 1.55153 * 102.94485 * 337.80990 * 13 12 11 17 17 H 1.09000 * 111.00094 * 277.38833 * 16 13 12 18 18 N 1.46506 * 111.00742 * 153.57708 * 16 13 12 19 19 C 1.36931 * 120.00037 * 159.61599 * 18 16 13 20 20 H 1.08002 * 120.00103 * 355.01780 * 19 18 16 21 21 C 1.38818 * 119.99722 * 175.02227 * 19 18 16 22 22 N 1.31615 * 119.99866 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99843 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46987 * 269.99557 * 23 21 19 25 25 H 1.48502 * 109.46895 * 150.00307 * 23 21 19 26 26 H 1.48493 * 109.47556 * 30.00235 * 23 21 19 27 27 C 1.47422 * 125.64477 * 5.69177 * 11 9 8 28 28 C 1.52995 * 117.51671 * 296.16526 * 8 7 6 29 29 C 1.53001 * 60.00305 * 107.47870 * 28 8 7 30 30 C 1.38174 * 120.05425 * 0.22489 * 7 6 5 31 31 H 1.08993 * 109.47105 * 60.00734 * 1 2 3 32 32 H 1.09001 * 109.47127 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47379 * 300.00415 * 1 2 3 34 34 H 1.08002 * 120.02737 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.97386 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.94309 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.88553 * 59.57232 * 12 11 9 38 38 H 1.09000 * 110.01641 * 298.47369 * 12 11 9 39 39 H 1.09004 * 109.47113 * 173.61287 * 15 13 12 40 40 H 1.08996 * 109.47471 * 293.61567 * 15 13 12 41 41 H 1.09003 * 109.46617 * 53.61639 * 15 13 12 42 42 H 0.97001 * 119.99402 * 339.61943 * 18 16 13 43 43 H 0.96996 * 120.00353 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.36854 * 85.24336 * 27 11 9 45 45 H 1.09003 * 110.36517 * 322.92465 * 27 11 9 46 46 H 1.09004 * 117.49567 * 214.96552 * 28 8 7 47 47 H 1.09003 * 117.50243 * 359.97438 * 28 8 7 48 48 H 1.09001 * 117.49494 * 252.51288 * 29 28 8 49 49 H 1.08997 * 117.51926 * 107.48254 * 29 28 8 50 50 H 1.07997 * 120.03070 * 179.74390 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0021 8 6 5.5607 2.5982 -0.0033 9 6 6.2739 1.4521 0.6666 10 8 6.5970 0.4781 0.0202 11 7 6.5527 1.5094 1.9840 12 6 7.3410 0.5228 2.7366 13 6 7.4169 1.0151 4.1973 14 1 6.6482 0.5382 4.8054 15 6 8.8057 0.7607 4.7868 16 6 7.1468 2.5372 4.0655 17 1 8.0565 3.0734 3.7952 18 7 6.5694 3.0769 5.2991 19 6 6.6398 4.4197 5.5577 20 1 7.1903 5.0695 4.8934 21 6 6.0038 4.9458 6.6738 22 7 6.0719 6.2364 6.9227 23 14 5.0514 3.8220 7.8224 24 1 3.6403 3.7317 7.3688 25 1 5.0938 4.3724 9.2010 26 1 5.6628 2.4688 7.8106 27 6 6.1168 2.5713 2.9090 28 6 6.2334 3.2336 -1.2217 29 6 6.1935 3.9867 0.1096 30 6 3.4311 1.2848 -0.0068 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 0.2127 2.3203 -0.0014 35 1 1.3338 4.5114 -0.0011 36 1 3.7921 4.6381 -0.0024 37 1 8.3445 0.4517 2.3168 38 1 6.8537 -0.4515 2.6987 39 1 8.8700 1.2165 5.7749 40 1 8.9739 -0.3130 4.8703 41 1 9.5625 1.1975 4.1352 42 1 6.1373 2.4829 5.9326 43 1 5.6279 6.6041 7.7027 44 1 5.1162 2.3590 3.2858 45 1 6.1377 3.5406 2.4108 46 1 7.1919 2.8226 -1.5388 47 1 5.5876 3.5929 -2.0230 48 1 5.5213 4.8415 0.1842 49 1 7.1254 4.0712 0.6685 50 1 4.0206 0.3800 -0.0114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939222556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:12 Heat of formation + Delta-G solvation = 2.458054 kcal Electronic energy + Delta-G solvation = -30998.103268 eV Core-core repulsion = 26992.100466 eV Total energy + Delta-G solvation = -4006.002801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79243 -39.85270 -38.39484 -37.36780 -36.02876 -34.19976 -32.46926 -31.22534 -31.06629 -29.96090 -27.93494 -27.56115 -26.77149 -24.45266 -23.60642 -22.99870 -22.35902 -21.69168 -20.79294 -20.12640 -19.01157 -17.89667 -17.59703 -16.70414 -16.41325 -16.07879 -15.98080 -15.88816 -15.35646 -15.16800 -14.42140 -14.15075 -13.80761 -13.79584 -13.51170 -13.28989 -13.26833 -13.17002 -12.91268 -12.68148 -12.53414 -12.29180 -12.06991 -11.92586 -11.77583 -11.57203 -11.38843 -11.33294 -11.18025 -11.09968 -10.86091 -10.71092 -10.63621 -10.55917 -10.36744 -9.98875 -9.70826 -9.59972 -9.05583 -8.79734 -8.39302 -8.28124 -7.40547 -5.87096 -3.24904 1.16777 1.37059 2.70194 3.03779 3.10448 3.30690 3.34262 3.39884 3.45953 3.92985 4.41167 4.46859 4.50504 4.67627 4.72380 4.82365 4.87154 4.92006 4.93793 4.96070 5.02085 5.10229 5.15767 5.23924 5.39942 5.41658 5.48961 5.51802 5.55380 5.65377 5.70516 5.71258 5.77420 5.80334 5.85447 5.94096 6.00313 6.11204 6.11514 6.19289 6.29573 6.34717 6.35878 6.44755 6.47818 6.53459 6.63360 6.74254 7.27393 7.72066 7.87905 8.29871 8.31987 9.08494 9.80802 9.99424 11.30543 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008919 B = 0.003790 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.670008 B = 7386.815776 C = 8416.329787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.129 3.871 4 C -0.211 4.211 5 C -0.075 4.075 6 C -0.149 4.149 7 C 0.005 3.995 8 C -0.116 4.116 9 C 0.568 3.432 10 O -0.545 6.545 11 N -0.606 5.606 12 C 0.117 3.883 13 C -0.117 4.117 14 H 0.081 0.919 15 C -0.135 4.135 16 C 0.182 3.818 17 H 0.074 0.926 18 N -0.735 5.735 19 C -0.251 4.251 20 H 0.092 0.908 21 C 0.012 3.988 22 N -0.929 5.929 23 Si 0.882 3.118 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.277 1.277 27 C 0.072 3.928 28 C -0.134 4.134 29 C -0.156 4.156 30 C -0.141 4.141 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.364 0.636 43 H 0.261 0.739 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.111 0.889 49 H 0.108 0.892 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 -8.554 -14.948 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.084 3.916 4 C -0.230 4.230 5 C -0.093 4.093 6 C -0.167 4.167 7 C 0.004 3.996 8 C -0.119 4.119 9 C 0.356 3.644 10 O -0.423 6.423 11 N -0.338 5.338 12 C -0.006 4.006 13 C -0.137 4.137 14 H 0.100 0.900 15 C -0.193 4.193 16 C 0.071 3.929 17 H 0.092 0.908 18 N -0.376 5.376 19 C -0.381 4.381 20 H 0.110 0.890 21 C -0.185 4.185 22 N -0.575 5.575 23 Si 0.712 3.288 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.053 4.053 28 C -0.171 4.171 29 C -0.193 4.193 30 C -0.159 4.159 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.198 0.802 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.129 0.871 49 H 0.126 0.874 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.982 -9.001 -15.331 18.758 hybrid contribution -1.222 -0.570 1.058 1.713 sum -7.204 -9.571 -14.273 18.634 Atomic orbital electron populations 1.23044 0.78510 1.03848 1.01317 1.86085 1.21266 1.26974 1.88758 1.18909 0.92020 0.84185 0.96494 1.21220 0.99921 0.92418 1.09417 1.20880 0.94310 0.97027 0.97111 1.20950 0.93713 0.98024 1.04029 1.18396 0.91039 0.92604 0.97545 1.19958 0.91559 0.95122 1.05276 1.18910 0.78523 0.86525 0.80458 1.90675 1.54366 1.33318 1.63971 1.48420 1.52259 1.25994 1.07143 1.21966 0.95594 0.92036 0.91017 1.22528 0.98948 0.98018 0.94227 0.90033 1.21676 0.95027 1.00778 1.01777 1.21341 0.94429 0.90867 0.86301 0.90821 1.42653 1.69417 1.06430 1.19140 1.19043 1.27979 0.82375 1.08655 0.89014 1.24662 0.99949 0.95424 0.98436 1.69688 1.47979 1.10507 1.29364 0.86600 0.80635 0.80411 0.81148 1.21005 1.21656 1.20315 1.23518 1.00200 0.90198 0.91398 1.23097 1.02000 1.00851 0.91192 1.23313 1.02992 0.93037 0.99949 1.20259 0.91450 0.98398 1.05841 0.92718 0.88329 0.92602 0.85545 0.85463 0.85247 0.91453 0.91872 0.91430 0.93077 0.92569 0.80213 0.92916 0.91453 0.90096 0.87823 0.87623 0.87055 0.87359 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.10 10.50 -19.41 -0.20 -4.30 16 3 C 0.13 1.76 6.69 -39.21 -0.26 1.50 16 4 C -0.21 -2.45 9.04 -39.43 -0.36 -2.80 16 5 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 6 C -0.15 -1.83 9.35 -39.56 -0.37 -2.19 16 7 C 0.00 0.07 5.48 -104.65 -0.57 -0.51 16 8 C -0.12 -1.61 1.77 -156.82 -0.28 -1.89 16 9 C 0.57 9.33 5.90 -10.99 -0.06 9.26 16 10 O -0.55 -10.36 17.11 5.55 0.09 -10.26 16 11 N -0.61 -9.62 3.33 -170.53 -0.57 -10.18 16 12 C 0.12 1.71 6.47 -3.07 -0.02 1.69 16 13 C -0.12 -1.74 3.17 -88.79 -0.28 -2.02 16 14 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 15 C -0.13 -1.78 9.17 37.16 0.34 -1.44 16 16 C 0.18 3.22 3.14 -65.78 -0.21 3.02 16 17 H 0.07 1.34 8.03 -51.93 -0.42 0.93 16 18 N -0.73 -15.96 5.06 -51.35 -0.26 -16.22 16 19 C -0.25 -6.56 10.46 -15.06 -0.16 -6.71 16 20 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 22 N -0.93 -27.81 13.97 55.49 0.78 -27.03 16 23 Si 0.88 21.14 27.79 -169.99 -4.72 16.42 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.21 6.45 56.52 0.36 -5.85 16 27 C 0.07 1.21 6.39 -2.53 -0.02 1.20 16 28 C -0.13 -1.53 9.90 -26.73 -0.26 -1.79 16 29 C -0.16 -1.83 7.71 -26.73 -0.21 -2.04 16 30 C -0.14 -2.12 9.26 -39.43 -0.37 -2.48 16 31 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 34 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.13 1.36 5.95 -52.49 -0.31 1.05 16 37 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 42 H 0.36 7.89 5.57 -40.82 -0.23 7.66 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.34 5.53 -51.93 -0.29 1.05 16 46 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.11 1.16 6.10 -51.93 -0.32 0.84 16 49 H 0.11 1.32 7.67 -51.93 -0.40 0.92 16 50 H 0.13 2.17 7.09 -52.49 -0.37 1.80 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -32.23 400.49 -9.10 -41.33 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -7.67 Total: 11.22 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.58 Total: -7.00 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.05 Total: -53.43 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.11 Total: -14.56 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.72 Total: 16.42 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.23 -9.10 -41.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939222556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.789 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds