Wall clock time and date at job start Wed Apr 1 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99662 * 2 1 4 4 C 1.38752 * 120.05934 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.94591 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05489 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.11405 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.97693 * 179.97438 * 7 6 5 9 9 C 1.50698 * 115.55348 * 150.45481 * 8 7 6 10 10 O 1.21286 * 119.99442 * 90.55464 * 9 8 7 11 11 N 1.34779 * 120.00612 * 270.55795 * 9 8 7 12 12 C 1.47015 * 125.64749 * 185.63769 * 11 9 8 13 13 C 1.54322 * 107.26671 * 178.98481 * 12 11 9 14 14 H 1.09004 * 110.72182 * 96.17371 * 13 12 11 15 15 C 1.53002 * 110.87304 * 219.37075 * 13 12 11 16 16 C 1.55153 * 102.94485 * 337.80990 * 13 12 11 17 17 H 1.09000 * 111.00094 * 277.38833 * 16 13 12 18 18 N 1.46506 * 111.00742 * 153.57708 * 16 13 12 19 19 C 1.36931 * 120.00037 * 159.61599 * 18 16 13 20 20 H 1.08002 * 120.00103 * 355.01780 * 19 18 16 21 21 C 1.38818 * 119.99722 * 175.02227 * 19 18 16 22 22 N 1.31615 * 119.99866 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99843 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46987 * 269.99557 * 23 21 19 25 25 H 1.48502 * 109.46895 * 150.00307 * 23 21 19 26 26 H 1.48493 * 109.47556 * 30.00235 * 23 21 19 27 27 C 1.47422 * 125.64477 * 5.69177 * 11 9 8 28 28 C 1.52995 * 117.51671 * 296.16526 * 8 7 6 29 29 C 1.53001 * 60.00305 * 107.47870 * 28 8 7 30 30 C 1.38174 * 120.05425 * 0.22489 * 7 6 5 31 31 H 1.08993 * 109.47105 * 60.00734 * 1 2 3 32 32 H 1.09001 * 109.47127 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47379 * 300.00415 * 1 2 3 34 34 H 1.08002 * 120.02737 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.97386 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.94309 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.88553 * 59.57232 * 12 11 9 38 38 H 1.09000 * 110.01641 * 298.47369 * 12 11 9 39 39 H 1.09004 * 109.47113 * 173.61287 * 15 13 12 40 40 H 1.08996 * 109.47471 * 293.61567 * 15 13 12 41 41 H 1.09003 * 109.46617 * 53.61639 * 15 13 12 42 42 H 0.97001 * 119.99402 * 339.61943 * 18 16 13 43 43 H 0.96996 * 120.00353 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.36854 * 85.24336 * 27 11 9 45 45 H 1.09003 * 110.36517 * 322.92465 * 27 11 9 46 46 H 1.09004 * 117.49567 * 214.96552 * 28 8 7 47 47 H 1.09003 * 117.50243 * 359.97438 * 28 8 7 48 48 H 1.09001 * 117.49494 * 252.51288 * 29 28 8 49 49 H 1.08997 * 117.51926 * 107.48254 * 29 28 8 50 50 H 1.07997 * 120.03070 * 179.74390 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0021 8 6 5.5607 2.5982 -0.0033 9 6 6.2739 1.4521 0.6666 10 8 6.5970 0.4781 0.0202 11 7 6.5527 1.5094 1.9840 12 6 7.3410 0.5228 2.7366 13 6 7.4169 1.0151 4.1973 14 1 6.6482 0.5382 4.8054 15 6 8.8057 0.7607 4.7868 16 6 7.1468 2.5372 4.0655 17 1 8.0565 3.0734 3.7952 18 7 6.5694 3.0769 5.2991 19 6 6.6398 4.4197 5.5577 20 1 7.1903 5.0695 4.8934 21 6 6.0038 4.9458 6.6738 22 7 6.0719 6.2364 6.9227 23 14 5.0514 3.8220 7.8224 24 1 3.6403 3.7317 7.3688 25 1 5.0938 4.3724 9.2010 26 1 5.6628 2.4688 7.8106 27 6 6.1168 2.5713 2.9090 28 6 6.2334 3.2336 -1.2217 29 6 6.1935 3.9867 0.1096 30 6 3.4311 1.2848 -0.0068 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 0.2127 2.3203 -0.0014 35 1 1.3338 4.5114 -0.0011 36 1 3.7921 4.6381 -0.0024 37 1 8.3445 0.4517 2.3168 38 1 6.8537 -0.4515 2.6987 39 1 8.8700 1.2165 5.7749 40 1 8.9739 -0.3130 4.8703 41 1 9.5625 1.1975 4.1352 42 1 6.1373 2.4829 5.9326 43 1 5.6279 6.6041 7.7027 44 1 5.1162 2.3590 3.2858 45 1 6.1377 3.5406 2.4108 46 1 7.1919 2.8226 -1.5388 47 1 5.5876 3.5929 -2.0230 48 1 5.5213 4.8415 0.1842 49 1 7.1254 4.0712 0.6685 50 1 4.0206 0.3800 -0.0114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939222556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:11 Heat of formation + Delta-G solvation = -16.621896 kcal Electronic energy + Delta-G solvation = -30998.930636 eV Core-core repulsion = 26992.100466 eV Total energy + Delta-G solvation = -4006.830170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.89884 -40.90773 -39.55312 -38.57768 -37.03846 -35.96509 -33.92417 -32.86292 -32.15823 -30.86962 -29.49101 -28.35262 -27.87622 -25.83482 -25.06191 -23.97105 -23.35489 -22.95300 -22.03732 -21.51843 -20.12454 -19.50561 -18.96133 -17.83456 -17.53391 -17.21080 -17.08056 -16.70485 -16.60640 -16.30559 -16.11679 -15.44964 -15.13260 -14.84024 -14.72445 -14.59563 -14.52801 -14.41058 -14.28737 -13.80431 -13.70530 -13.50752 -13.21260 -13.06661 -12.98724 -12.94848 -12.78309 -12.40696 -12.27326 -12.17164 -12.14559 -12.03945 -11.94474 -11.79562 -11.64003 -11.55191 -11.38821 -11.03513 -10.80559 -9.79067 -9.75090 -9.31885 -9.21482 -7.99257 -5.34285 0.21478 0.41123 1.40806 1.42749 1.43042 1.49468 1.82868 2.28239 2.49873 2.50431 2.93857 3.20497 3.31077 3.44488 3.62718 3.64033 3.76456 3.84960 3.85321 3.89272 4.02912 4.09342 4.21608 4.26321 4.32621 4.35386 4.37336 4.47422 4.55000 4.57574 4.65384 4.65980 4.67183 4.72502 4.85072 4.88618 4.89589 4.97198 5.06717 5.07212 5.09824 5.17626 5.26413 5.29663 5.42755 5.43313 5.53632 5.74026 5.81218 6.23861 6.39512 6.41274 7.00604 7.09179 7.82632 8.01939 9.21428 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008919 B = 0.003790 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.670008 B = 7386.815776 C = 8416.329787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.118 3.882 4 C -0.210 4.210 5 C -0.072 4.072 6 C -0.156 4.156 7 C -0.003 4.003 8 C -0.138 4.138 9 C 0.566 3.434 10 O -0.577 6.577 11 N -0.606 5.606 12 C 0.116 3.884 13 C -0.105 4.105 14 H 0.084 0.916 15 C -0.131 4.131 16 C 0.177 3.823 17 H 0.069 0.931 18 N -0.736 5.736 19 C -0.228 4.228 20 H 0.065 0.935 21 C -0.052 4.052 22 N -0.978 5.978 23 Si 0.943 3.057 24 H -0.283 1.283 25 H -0.299 1.299 26 H -0.251 1.251 27 C 0.086 3.914 28 C -0.121 4.121 29 C -0.147 4.147 30 C -0.171 4.171 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.367 0.633 43 H 0.257 0.743 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.126 0.874 48 H 0.128 0.872 49 H 0.102 0.898 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 -9.107 -15.456 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.073 3.927 4 C -0.229 4.229 5 C -0.090 4.090 6 C -0.174 4.174 7 C -0.003 4.003 8 C -0.141 4.141 9 C 0.355 3.645 10 O -0.457 6.457 11 N -0.337 5.337 12 C -0.007 4.007 13 C -0.125 4.125 14 H 0.102 0.898 15 C -0.188 4.188 16 C 0.067 3.933 17 H 0.087 0.913 18 N -0.378 5.378 19 C -0.358 4.358 20 H 0.083 0.917 21 C -0.244 4.244 22 N -0.628 5.628 23 Si 0.771 3.229 24 H -0.210 1.210 25 H -0.226 1.226 26 H -0.176 1.176 27 C -0.039 4.039 28 C -0.158 4.158 29 C -0.183 4.183 30 C -0.190 4.190 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.165 0.835 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.144 0.856 48 H 0.146 0.854 49 H 0.120 0.880 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.185 -9.609 -15.868 19.894 hybrid contribution -0.831 -0.443 1.107 1.453 sum -8.016 -10.053 -14.761 19.575 Atomic orbital electron populations 1.23360 0.76176 1.05566 1.02459 1.86053 1.23785 1.27100 1.88739 1.19064 0.91787 0.85243 0.96587 1.21539 1.01251 0.91711 1.08356 1.21305 0.94186 0.98093 0.95387 1.21202 0.94350 0.98012 1.03832 1.18462 0.91007 0.92849 0.97992 1.19991 0.91767 0.95143 1.07175 1.19378 0.77953 0.86822 0.80306 1.90646 1.55741 1.34754 1.64544 1.48447 1.52234 1.25901 1.07165 1.22051 0.95984 0.91911 0.90742 1.22456 1.00222 0.95333 0.94494 0.89757 1.21655 0.93889 1.02387 1.00911 1.21469 0.94053 0.92813 0.85014 0.91276 1.42582 1.69718 1.04820 1.20657 1.18995 1.25704 0.83885 1.07265 0.91675 1.25350 1.01863 0.96663 1.00531 1.69850 1.50073 1.12631 1.30260 0.85592 0.79194 0.79706 0.78379 1.20972 1.22582 1.17586 1.23196 0.99014 0.90574 0.91159 1.23205 1.01870 0.99484 0.91223 1.23371 1.02661 0.92355 0.99928 1.20200 0.92328 0.97883 1.08554 0.91113 0.86521 0.91767 0.82823 0.82393 0.83505 0.90525 0.91585 0.92655 0.90675 0.92015 0.79871 0.93393 0.92741 0.89968 0.88033 0.85628 0.85391 0.87996 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.78 10.50 -92.38 -0.97 -9.75 16 3 C 0.12 3.19 6.69 22.51 0.15 3.34 16 4 C -0.21 -4.43 9.04 22.36 0.20 -4.22 16 5 C -0.07 -1.43 10.04 22.25 0.22 -1.20 16 6 C -0.16 -3.53 9.35 22.28 0.21 -3.32 16 7 C 0.00 -0.07 5.48 -19.88 -0.11 -0.18 16 8 C -0.14 -3.78 1.77 -53.68 -0.09 -3.87 16 9 C 0.57 18.78 5.90 87.66 0.52 19.30 16 10 O -0.58 -22.39 17.11 -3.05 -0.05 -22.45 16 11 N -0.61 -19.10 3.33 -811.82 -2.70 -21.80 16 12 C 0.12 3.27 6.47 86.73 0.56 3.83 16 13 C -0.11 -2.95 3.17 -9.61 -0.03 -2.98 16 14 H 0.08 2.35 8.00 -2.39 -0.02 2.33 16 15 C -0.13 -3.17 9.17 71.98 0.66 -2.51 16 16 C 0.18 6.10 3.14 46.38 0.15 6.25 16 17 H 0.07 2.48 8.03 -2.39 -0.02 2.46 16 18 N -0.74 -31.26 5.06 -316.38 -1.60 -32.86 16 19 C -0.23 -11.92 10.46 84.04 0.88 -11.04 16 20 H 0.07 3.72 8.06 -2.91 -0.02 3.69 16 21 C -0.05 -2.88 5.50 84.86 0.47 -2.41 16 22 N -0.98 -59.65 13.97 21.65 0.30 -59.35 16 23 Si 0.94 43.30 27.79 68.60 1.91 45.21 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.25 -10.32 6.45 99.48 0.64 -9.68 16 27 C 0.09 2.86 6.39 86.85 0.55 3.41 16 28 C -0.12 -2.62 9.90 30.59 0.30 -2.31 16 29 C -0.15 -3.27 7.71 30.60 0.24 -3.03 16 30 C -0.17 -5.28 9.26 22.37 0.21 -5.07 16 31 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 34 H 0.15 2.28 6.30 -2.91 -0.02 2.27 16 35 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.15 2.71 5.95 -2.91 -0.02 2.69 16 37 H 0.08 2.04 7.78 -2.38 -0.02 2.02 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 42 H 0.37 15.22 5.57 -92.71 -0.52 14.71 16 43 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 2.70 5.53 -2.39 -0.01 2.68 16 46 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 47 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.13 2.40 6.10 -2.39 -0.01 2.38 16 49 H 0.10 2.40 7.67 -2.39 -0.02 2.38 16 50 H 0.10 3.63 7.09 -2.91 -0.02 3.61 16 Total: -1.00 -71.42 400.49 3.45 -67.97 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.37 Total: 37.68 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 6.19 Total: -4.66 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.00 Total: -114.01 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.02 Total: -32.19 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.91 Total: 45.21 kcal Total: -71.42 3.45 -67.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939222556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.352 kcal (2) G-P(sol) polarization free energy of solvation -71.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds