Wall clock time and date at job start Wed Apr 1 2020 03:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.78180 * 2 1 4 4 C 1.54318 * 110.72020 * 236.75891 * 2 1 3 5 5 N 1.47022 * 107.40463 * 219.52288 * 4 2 1 6 6 C 1.34773 * 125.65295 * 178.90071 * 5 4 2 7 7 O 1.21583 * 119.99799 * 354.22727 * 6 5 4 8 8 C 1.47599 * 120.00301 * 174.23268 * 6 5 4 9 9 C 1.39734 * 120.08716 * 335.20390 * 8 6 5 10 10 C 1.37702 * 119.91007 * 179.74672 * 9 8 6 11 11 C 1.38991 * 120.08986 * 0.53113 * 10 9 8 12 12 O 1.35713 * 119.91473 * 179.76310 * 11 10 9 13 13 C 1.42907 * 116.99875 * 359.97438 * 12 11 10 14 14 C 1.52995 * 109.47189 * 179.97438 * 13 12 11 15 15 C 1.53003 * 117.49722 * 243.62026 * 14 13 12 16 16 C 1.52997 * 60.00181 * 252.50899 * 15 14 13 17 17 C 1.38998 * 120.17799 * 359.74625 * 11 10 9 18 18 C 1.37699 * 120.08562 * 359.97337 * 17 11 10 19 19 C 1.47428 * 108.69976 * 358.86659 * 5 4 2 20 20 C 1.54902 * 104.83464 * 24.12433 * 19 5 4 21 21 H 1.08997 * 111.01048 * 204.87917 * 20 19 5 22 22 N 1.46502 * 111.00388 * 81.06755 * 20 19 5 23 23 C 1.36938 * 120.00281 * 86.45241 * 22 20 19 24 24 H 1.07999 * 119.99603 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00262 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00047 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00128 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47366 * 90.00130 * 27 25 23 29 29 H 1.48505 * 109.47359 * 210.00142 * 27 25 23 30 30 H 1.48500 * 109.46920 * 329.99827 * 27 25 23 31 31 H 1.08993 * 109.47349 * 181.78255 * 1 2 3 32 32 H 1.08998 * 109.47089 * 301.78579 * 1 2 3 33 33 H 1.09001 * 109.47020 * 61.78428 * 1 2 3 34 34 H 1.09003 * 109.88332 * 100.03247 * 4 2 1 35 35 H 1.09003 * 109.88456 * 339.02139 * 4 2 1 36 36 H 1.08006 * 120.04542 * 0.02840 * 9 8 6 37 37 H 1.08007 * 119.95427 * 180.27398 * 10 9 8 38 38 H 1.09004 * 109.46960 * 300.00368 * 13 12 11 39 39 H 1.08996 * 109.46722 * 59.99693 * 13 12 11 40 40 H 1.09000 * 115.55302 * 29.32867 * 14 13 12 41 41 H 1.08997 * 117.49687 * 0.02562 * 15 14 13 42 42 H 1.09000 * 117.49424 * 145.02298 * 15 14 13 43 43 H 1.08993 * 117.50510 * 252.51402 * 16 15 14 44 44 H 1.09000 * 117.49915 * 107.48629 * 16 15 14 45 45 H 1.07996 * 119.95752 * 179.97438 * 17 11 10 46 46 H 1.07999 * 120.04532 * 180.02562 * 18 17 11 47 47 H 1.09003 * 110.36734 * 142.96476 * 19 5 4 48 48 H 1.09000 * 110.36624 * 265.17476 * 19 5 4 49 49 H 0.97008 * 120.00104 * 266.46028 * 22 20 19 50 50 H 0.97001 * 120.00326 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2438 -1.5535 -0.7416 6 6 3.9886 -2.3873 -1.4942 7 8 3.6525 -2.6404 -2.6349 8 6 5.2122 -2.9932 -0.9337 9 6 5.8897 -2.3629 0.1134 10 6 7.0279 -2.9341 0.6371 11 6 7.5094 -4.1304 0.1183 12 8 8.6342 -4.6877 0.6339 13 6 9.2707 -3.9904 1.7067 14 6 10.5119 -4.7653 2.1534 15 6 10.5229 -5.3208 3.5789 16 6 11.4015 -4.1212 3.2186 17 6 6.8416 -4.7576 -0.9271 18 6 5.6995 -4.1958 -1.4525 19 6 3.4656 -1.2541 0.6848 20 6 2.0832 -0.7973 1.2138 21 1 2.1920 -0.1551 2.0878 22 7 1.2295 -1.9491 1.5151 23 6 1.3015 -2.5524 2.7423 24 1 1.9874 -2.1788 3.4882 25 6 0.4930 -3.6440 3.0276 26 7 -0.3426 -4.0996 2.1184 27 14 0.5907 -4.4665 4.7020 28 1 -0.3767 -3.8231 5.6268 29 1 0.2612 -5.9081 4.5654 30 1 1.9654 -4.3223 5.2447 31 1 -0.3633 -1.0271 0.0320 32 1 -0.3633 0.5413 0.8735 33 1 -0.3633 0.4859 -0.9056 34 1 2.3742 -0.1024 -1.9977 35 1 1.3120 -1.4738 -1.5793 36 1 5.5185 -1.4313 0.5144 37 1 7.5497 -2.4498 1.4493 38 1 9.5641 -2.9960 1.3702 39 1 8.5779 -3.9010 2.5434 40 1 11.0014 -5.3559 1.3789 41 1 9.6456 -5.1345 4.1984 42 1 11.0195 -6.2772 3.7425 43 1 12.4760 -4.2883 3.1452 44 1 11.1024 -3.1454 3.6012 45 1 7.2190 -5.6867 -1.3278 46 1 5.1809 -4.6839 -2.2644 47 1 3.7974 -2.1480 1.2130 48 1 4.1988 -0.4551 0.7952 49 1 0.6132 -2.2845 0.8452 50 1 -0.9073 -4.8627 2.3176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939781346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:02 Heat of formation + Delta-G solvation = 3.605176 kcal Electronic energy + Delta-G solvation = -30115.582860 eV Core-core repulsion = 26109.629802 eV Total energy + Delta-G solvation = -4005.953058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.53316 -39.68526 -38.09130 -37.41221 -36.51508 -33.91713 -32.58922 -31.11971 -30.55681 -30.17864 -27.92710 -27.82148 -26.00563 -24.10814 -23.24697 -22.82193 -22.75146 -21.62009 -20.86794 -19.50987 -19.24932 -18.28529 -17.57458 -16.82440 -16.62552 -16.10398 -15.86940 -15.42378 -15.06426 -14.79133 -14.59899 -14.22023 -14.11976 -13.87500 -13.51876 -13.26875 -13.03629 -12.95333 -12.84527 -12.74634 -12.44801 -12.05055 -11.95200 -11.84540 -11.69425 -11.59365 -11.35322 -11.12050 -10.97466 -10.92472 -10.83449 -10.65175 -10.45856 -10.33306 -10.27807 -9.94694 -9.67758 -9.58795 -9.08115 -8.99961 -8.33101 -8.11834 -7.03411 -5.83594 -3.13484 1.05225 1.35190 2.81783 3.06979 3.37338 3.38871 3.41419 3.43708 3.46250 3.96152 4.31491 4.44819 4.51770 4.57196 4.68204 4.73336 4.77707 4.89048 4.98748 5.10193 5.14607 5.16014 5.23313 5.29261 5.32631 5.38558 5.48777 5.52655 5.58389 5.62248 5.69625 5.73849 5.77695 5.90611 5.94761 5.96084 6.11903 6.16507 6.18862 6.24495 6.32538 6.36425 6.42424 6.49655 6.61067 6.66373 6.80438 6.93015 7.25963 7.62498 7.92832 8.34071 8.53217 9.45954 10.01272 10.35654 11.38450 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008468 B = 0.003258 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.786075 B = 8591.956924 C =10621.453952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.576 3.424 7 O -0.553 6.553 8 C -0.159 4.159 9 C -0.050 4.050 10 C -0.218 4.218 11 C 0.149 3.851 12 O -0.311 6.311 13 C 0.089 3.911 14 C -0.157 4.157 15 C -0.176 4.176 16 C -0.170 4.170 17 C -0.161 4.161 18 C -0.022 4.022 19 C 0.064 3.936 20 C 0.170 3.830 21 H 0.071 0.929 22 N -0.708 5.708 23 C -0.247 4.247 24 H 0.071 0.929 25 C -0.007 4.007 26 N -0.927 5.927 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.135 0.865 46 H 0.140 0.860 47 H 0.085 0.915 48 H 0.056 0.944 49 H 0.388 0.612 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.218 5.116 -1.189 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.329 5.329 6 C 0.366 3.634 7 O -0.433 6.433 8 C -0.162 4.162 9 C -0.069 4.069 10 C -0.237 4.237 11 C 0.104 3.896 12 O -0.224 6.224 13 C 0.014 3.986 14 C -0.176 4.176 15 C -0.213 4.213 16 C -0.207 4.207 17 C -0.180 4.180 18 C -0.041 4.041 19 C -0.062 4.062 20 C 0.058 3.942 21 H 0.089 0.911 22 N -0.349 5.349 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.204 4.204 26 N -0.574 5.574 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.104 0.896 48 H 0.074 0.926 49 H 0.224 0.776 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.175 4.677 -1.701 19.811 hybrid contribution -0.121 -0.533 0.952 1.098 sum 19.054 4.145 -0.749 19.514 Atomic orbital electron populations 1.21620 0.93442 1.03415 1.00649 1.22534 0.97130 0.98450 0.95151 0.90217 1.21949 0.87918 0.94213 0.96482 1.48155 1.29396 1.43668 1.11644 1.17789 0.82778 0.78040 0.84837 1.90737 1.72221 1.61657 1.18674 1.19777 0.97781 0.98307 1.00314 1.21645 0.92966 0.99541 0.92709 1.21142 1.00493 0.97554 1.04510 1.19202 0.85929 0.91711 0.92801 1.85995 1.37395 1.49607 1.49388 1.22345 0.92724 0.94905 0.88648 1.22097 0.97960 1.04120 0.93376 1.23124 1.02603 0.98274 0.97268 1.22995 0.97759 0.97997 1.01965 1.20326 0.97158 1.02250 0.98272 1.21026 0.93206 0.92879 0.96967 1.23684 1.01070 1.00556 0.80869 1.21433 0.88566 0.89971 0.94264 0.91113 1.42400 1.44768 1.32554 1.15222 1.19192 1.18359 1.09345 0.90905 0.91071 1.24742 0.98949 0.98806 0.97893 1.69657 1.26982 1.27375 1.33435 0.86223 0.77520 0.78823 0.83769 1.21645 1.21774 1.20767 0.90956 0.92265 0.93610 0.92300 0.91317 0.83998 0.85171 0.91399 0.91471 0.86568 0.88318 0.88370 0.88179 0.88426 0.84700 0.84269 0.89629 0.92568 0.77641 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.81 37.16 0.33 -1.76 16 2 C -0.11 -1.72 3.43 -88.65 -0.30 -2.02 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.95 6.45 -3.07 -0.02 1.93 16 5 N -0.60 -10.62 3.33 -171.72 -0.57 -11.19 16 6 C 0.58 10.99 7.63 -12.44 -0.09 10.90 16 7 O -0.55 -12.02 16.93 5.29 0.09 -11.94 16 8 C -0.16 -2.63 5.67 -104.96 -0.59 -3.23 16 9 C -0.05 -0.71 8.06 -39.22 -0.32 -1.03 16 10 C -0.22 -2.76 9.01 -39.50 -0.36 -3.11 16 11 C 0.15 1.98 6.70 -39.02 -0.26 1.72 16 12 O -0.31 -3.76 10.12 -18.85 -0.19 -3.95 16 13 C 0.09 0.81 5.02 37.16 0.19 1.00 16 14 C -0.16 -1.24 6.06 -90.62 -0.55 -1.79 16 15 C -0.18 -1.25 10.18 -26.73 -0.27 -1.52 16 16 C -0.17 -1.05 10.25 -26.73 -0.27 -1.32 16 17 C -0.16 -2.19 9.97 -39.50 -0.39 -2.59 16 18 C -0.02 -0.34 9.58 -39.22 -0.38 -0.71 16 19 C 0.06 1.06 4.69 -2.53 -0.01 1.05 16 20 C 0.17 3.06 3.45 -65.65 -0.23 2.83 16 21 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 22 N -0.71 -16.51 4.72 -51.23 -0.24 -16.76 16 23 C -0.25 -6.45 9.98 -15.06 -0.15 -6.60 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 27 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 31 H 0.07 1.36 6.21 -51.93 -0.32 1.04 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.28 7.82 -51.93 -0.41 0.87 16 36 H 0.14 1.82 4.60 -52.48 -0.24 1.57 16 37 H 0.13 1.30 6.28 -52.48 -0.33 0.97 16 38 H 0.07 0.54 7.65 -51.93 -0.40 0.14 16 39 H 0.07 0.60 7.38 -51.93 -0.38 0.21 16 40 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 46 H 0.14 2.08 7.84 -52.49 -0.41 1.67 16 47 H 0.09 1.59 6.84 -51.93 -0.36 1.23 16 48 H 0.06 0.74 6.81 -51.93 -0.35 0.39 16 49 H 0.39 9.89 6.01 -40.82 -0.25 9.64 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -32.09 402.41 -10.57 -42.66 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -7.64 Total: 11.52 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.78 Total: -6.55 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.09 Total: -54.61 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.10 Total: -15.89 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.09 -10.57 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939781346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.267 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds