Wall clock time and date at job start Wed Apr 1 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.78180 * 2 1 4 4 C 1.54318 * 110.72020 * 236.75891 * 2 1 3 5 5 N 1.47022 * 107.40463 * 219.52288 * 4 2 1 6 6 C 1.34773 * 125.65295 * 178.90071 * 5 4 2 7 7 O 1.21583 * 119.99799 * 354.22727 * 6 5 4 8 8 C 1.47599 * 120.00301 * 174.23268 * 6 5 4 9 9 C 1.39734 * 120.08716 * 335.20390 * 8 6 5 10 10 C 1.37702 * 119.91007 * 179.74672 * 9 8 6 11 11 C 1.38991 * 120.08986 * 0.53113 * 10 9 8 12 12 O 1.35713 * 119.91473 * 179.76310 * 11 10 9 13 13 C 1.42907 * 116.99875 * 359.97438 * 12 11 10 14 14 C 1.52995 * 109.47189 * 179.97438 * 13 12 11 15 15 C 1.53003 * 117.49722 * 243.62026 * 14 13 12 16 16 C 1.52997 * 60.00181 * 252.50899 * 15 14 13 17 17 C 1.38998 * 120.17799 * 359.74625 * 11 10 9 18 18 C 1.37699 * 120.08562 * 359.97337 * 17 11 10 19 19 C 1.47428 * 108.69976 * 358.86659 * 5 4 2 20 20 C 1.54902 * 104.83464 * 24.12433 * 19 5 4 21 21 H 1.08997 * 111.01048 * 204.87917 * 20 19 5 22 22 N 1.46502 * 111.00388 * 81.06755 * 20 19 5 23 23 C 1.36938 * 120.00281 * 86.45241 * 22 20 19 24 24 H 1.07999 * 119.99603 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00262 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00047 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00128 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47366 * 90.00130 * 27 25 23 29 29 H 1.48505 * 109.47359 * 210.00142 * 27 25 23 30 30 H 1.48500 * 109.46920 * 329.99827 * 27 25 23 31 31 H 1.08993 * 109.47349 * 181.78255 * 1 2 3 32 32 H 1.08998 * 109.47089 * 301.78579 * 1 2 3 33 33 H 1.09001 * 109.47020 * 61.78428 * 1 2 3 34 34 H 1.09003 * 109.88332 * 100.03247 * 4 2 1 35 35 H 1.09003 * 109.88456 * 339.02139 * 4 2 1 36 36 H 1.08006 * 120.04542 * 0.02840 * 9 8 6 37 37 H 1.08007 * 119.95427 * 180.27398 * 10 9 8 38 38 H 1.09004 * 109.46960 * 300.00368 * 13 12 11 39 39 H 1.08996 * 109.46722 * 59.99693 * 13 12 11 40 40 H 1.09000 * 115.55302 * 29.32867 * 14 13 12 41 41 H 1.08997 * 117.49687 * 0.02562 * 15 14 13 42 42 H 1.09000 * 117.49424 * 145.02298 * 15 14 13 43 43 H 1.08993 * 117.50510 * 252.51402 * 16 15 14 44 44 H 1.09000 * 117.49915 * 107.48629 * 16 15 14 45 45 H 1.07996 * 119.95752 * 179.97438 * 17 11 10 46 46 H 1.07999 * 120.04532 * 180.02562 * 18 17 11 47 47 H 1.09003 * 110.36734 * 142.96476 * 19 5 4 48 48 H 1.09000 * 110.36624 * 265.17476 * 19 5 4 49 49 H 0.97008 * 120.00104 * 266.46028 * 22 20 19 50 50 H 0.97001 * 120.00326 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2438 -1.5535 -0.7416 6 6 3.9886 -2.3873 -1.4942 7 8 3.6525 -2.6404 -2.6349 8 6 5.2122 -2.9932 -0.9337 9 6 5.8897 -2.3629 0.1134 10 6 7.0279 -2.9341 0.6371 11 6 7.5094 -4.1304 0.1183 12 8 8.6342 -4.6877 0.6339 13 6 9.2707 -3.9904 1.7067 14 6 10.5119 -4.7653 2.1534 15 6 10.5229 -5.3208 3.5789 16 6 11.4015 -4.1212 3.2186 17 6 6.8416 -4.7576 -0.9271 18 6 5.6995 -4.1958 -1.4525 19 6 3.4656 -1.2541 0.6848 20 6 2.0832 -0.7973 1.2138 21 1 2.1920 -0.1551 2.0878 22 7 1.2295 -1.9491 1.5151 23 6 1.3015 -2.5524 2.7423 24 1 1.9874 -2.1788 3.4882 25 6 0.4930 -3.6440 3.0276 26 7 -0.3426 -4.0996 2.1184 27 14 0.5907 -4.4665 4.7020 28 1 -0.3767 -3.8231 5.6268 29 1 0.2612 -5.9081 4.5654 30 1 1.9654 -4.3223 5.2447 31 1 -0.3633 -1.0271 0.0320 32 1 -0.3633 0.5413 0.8735 33 1 -0.3633 0.4859 -0.9056 34 1 2.3742 -0.1024 -1.9977 35 1 1.3120 -1.4738 -1.5793 36 1 5.5185 -1.4313 0.5144 37 1 7.5497 -2.4498 1.4493 38 1 9.5641 -2.9960 1.3702 39 1 8.5779 -3.9010 2.5434 40 1 11.0014 -5.3559 1.3789 41 1 9.6456 -5.1345 4.1984 42 1 11.0195 -6.2772 3.7425 43 1 12.4760 -4.2883 3.1452 44 1 11.1024 -3.1454 3.6012 45 1 7.2190 -5.6867 -1.3278 46 1 5.1809 -4.6839 -2.2644 47 1 3.7974 -2.1480 1.2130 48 1 4.1988 -0.4551 0.7952 49 1 0.6132 -2.2845 0.8452 50 1 -0.9073 -4.8627 2.3176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939781346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:01 Heat of formation + Delta-G solvation = -14.627572 kcal Electronic energy + Delta-G solvation = -30116.373491 eV Core-core repulsion = 26109.629802 eV Total energy + Delta-G solvation = -4006.743690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.69487 -40.84603 -39.22217 -38.48512 -37.44264 -35.68532 -34.06930 -32.44725 -32.04011 -31.31573 -29.40337 -28.73469 -27.25268 -25.89786 -24.60219 -23.80651 -23.27679 -22.91595 -21.56541 -20.77465 -20.64982 -19.38464 -19.23094 -18.21893 -17.59034 -17.35942 -16.90090 -16.60058 -16.44798 -16.02019 -15.71001 -15.63384 -15.40042 -15.03918 -14.70087 -14.64942 -14.38531 -14.12239 -14.05774 -13.82393 -13.68313 -13.45630 -13.18207 -13.03067 -12.87371 -12.80982 -12.47555 -12.43681 -12.28374 -12.23901 -12.12737 -11.98380 -11.75543 -11.45438 -11.39554 -11.34168 -11.10786 -10.93131 -10.88870 -10.12663 -9.71487 -9.28793 -8.92147 -7.91299 -5.18882 -0.10719 0.28314 1.48063 1.49155 1.56856 1.72992 1.98160 2.07080 2.57602 2.77382 2.86452 3.39038 3.43455 3.61434 3.72294 3.81125 3.85622 3.89505 3.91784 3.96340 4.04895 4.09550 4.18158 4.21955 4.29917 4.41287 4.46270 4.53176 4.57172 4.64577 4.65096 4.72148 4.78311 4.85484 4.92695 4.95725 5.00381 5.00777 5.04502 5.18036 5.19871 5.21725 5.22516 5.23334 5.32877 5.46672 5.54913 5.59782 5.61711 6.29867 6.32022 6.52707 7.10150 7.37081 8.13583 8.34765 9.32373 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008468 B = 0.003258 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.786075 B = 8591.956924 C =10621.453952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 H 0.124 0.876 4 C 0.113 3.887 5 N -0.600 5.600 6 C 0.566 3.434 7 O -0.594 6.594 8 C -0.188 4.188 9 C -0.047 4.047 10 C -0.213 4.213 11 C 0.152 3.848 12 O -0.319 6.319 13 C 0.081 3.919 14 C -0.171 4.171 15 C -0.184 4.184 16 C -0.154 4.154 17 C -0.166 4.166 18 C -0.036 4.036 19 C 0.073 3.927 20 C 0.157 3.843 21 H 0.091 0.909 22 N -0.723 5.723 23 C -0.231 4.231 24 H 0.086 0.914 25 C -0.077 4.077 26 N -0.972 5.972 27 Si 0.965 3.035 28 H -0.287 1.287 29 H -0.306 1.306 30 H -0.266 1.266 31 H 0.031 0.969 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.150 0.850 46 H 0.130 0.870 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.372 0.628 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.065 7.446 0.743 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 H 0.142 0.858 4 C -0.009 4.009 5 N -0.330 5.330 6 C 0.357 3.643 7 O -0.478 6.478 8 C -0.191 4.191 9 C -0.065 4.065 10 C -0.231 4.231 11 C 0.106 3.894 12 O -0.232 6.232 13 C 0.007 3.993 14 C -0.189 4.189 15 C -0.221 4.221 16 C -0.191 4.191 17 C -0.184 4.184 18 C -0.055 4.055 19 C -0.052 4.052 20 C 0.046 3.954 21 H 0.108 0.892 22 N -0.362 5.362 23 C -0.362 4.362 24 H 0.104 0.896 25 C -0.269 4.269 26 N -0.623 5.623 27 Si 0.796 3.204 28 H -0.214 1.214 29 H -0.234 1.234 30 H -0.191 1.191 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.175 0.825 37 H 0.180 0.820 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.168 0.832 46 H 0.148 0.852 47 H 0.083 0.917 48 H 0.122 0.878 49 H 0.206 0.794 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.080 7.070 0.270 23.186 hybrid contribution -0.885 -1.208 0.348 1.537 sum 21.195 5.862 0.619 22.000 Atomic orbital electron populations 1.21552 0.93997 1.01094 1.02031 1.22537 0.96560 0.99814 0.92633 0.85839 1.22043 0.87051 0.93965 0.97853 1.48282 1.29257 1.43345 1.12138 1.18300 0.83577 0.77843 0.84545 1.90695 1.73535 1.63081 1.20457 1.19773 0.97738 0.99359 1.02203 1.21776 0.93089 0.99874 0.91756 1.21451 0.99828 0.97109 1.04735 1.19323 0.86067 0.91734 0.92315 1.86005 1.36822 1.50224 1.50168 1.22620 0.93042 0.95696 0.87933 1.22097 0.98120 1.05039 0.93689 1.23200 1.03051 0.99161 0.96656 1.23102 0.98141 0.97984 0.99899 1.20474 0.96609 1.02826 0.98539 1.21048 0.94075 0.93106 0.97270 1.23644 1.00921 1.01066 0.79592 1.21801 0.88595 0.88767 0.96206 0.89167 1.42607 1.45568 1.33961 1.14073 1.19657 1.16570 1.08173 0.91840 0.89645 1.25497 0.99844 1.00461 1.01057 1.69833 1.28821 1.28148 1.35457 0.85249 0.78088 0.76850 0.80253 1.21434 1.23366 1.19051 0.95015 0.91924 0.91200 0.90367 0.94493 0.82471 0.81982 0.89769 0.90985 0.87055 0.88537 0.87971 0.87016 0.87408 0.83202 0.85241 0.91669 0.87811 0.79420 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 8.81 71.98 0.63 -3.26 16 2 C -0.10 -2.68 3.43 -9.52 -0.03 -2.71 16 3 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 4 C 0.11 3.69 6.45 86.73 0.56 4.25 16 5 N -0.60 -20.91 3.33 -815.48 -2.71 -23.62 16 6 C 0.57 22.00 7.63 86.71 0.66 22.66 16 7 O -0.59 -27.02 16.93 -3.98 -0.07 -27.08 16 8 C -0.19 -6.23 5.67 -20.08 -0.11 -6.34 16 9 C -0.05 -1.23 8.06 22.50 0.18 -1.05 16 10 C -0.21 -4.78 9.01 22.32 0.20 -4.58 16 11 C 0.15 3.75 6.70 22.63 0.15 3.90 16 12 O -0.32 -7.07 10.12 -90.35 -0.91 -7.99 16 13 C 0.08 1.26 5.02 71.98 0.36 1.62 16 14 C -0.17 -2.31 6.06 -10.79 -0.07 -2.38 16 15 C -0.18 -2.22 10.18 30.59 0.31 -1.91 16 16 C -0.15 -1.45 10.25 30.59 0.31 -1.14 16 17 C -0.17 -4.44 9.97 22.32 0.22 -4.22 16 18 C -0.04 -1.13 9.58 22.51 0.22 -0.92 16 19 C 0.07 2.21 4.69 86.85 0.41 2.61 16 20 C 0.16 5.26 3.45 46.47 0.16 5.42 16 21 H 0.09 2.74 8.13 -2.39 -0.02 2.72 16 22 N -0.72 -33.62 4.72 -315.98 -1.49 -35.12 16 23 C -0.23 -11.91 9.98 84.03 0.84 -11.08 16 24 H 0.09 4.09 7.83 -2.91 -0.02 4.07 16 25 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 26 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 27 Si 0.97 45.24 29.55 68.60 2.03 47.26 16 28 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 29 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 30 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 31 H 0.03 1.22 6.21 -2.39 -0.01 1.20 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.04 1.43 7.82 -2.39 -0.02 1.41 16 36 H 0.16 3.48 4.60 -2.91 -0.01 3.47 16 37 H 0.16 2.53 6.28 -2.91 -0.02 2.51 16 38 H 0.08 1.03 7.65 -2.38 -0.02 1.01 16 39 H 0.07 1.05 7.38 -2.39 -0.02 1.03 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 1.20 8.03 -2.39 -0.02 1.18 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 45 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 46 H 0.13 4.18 7.84 -2.91 -0.02 4.15 16 47 H 0.06 2.29 6.84 -2.39 -0.02 2.28 16 48 H 0.10 2.23 6.81 -2.39 -0.02 2.21 16 49 H 0.37 19.63 6.01 -92.70 -0.56 19.07 16 50 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -72.96 402.41 3.00 -69.97 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.40 Total: 38.71 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.48 Total: -2.91 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -3.92 Total: -117.95 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.98 Total: -35.07 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.96 3.00 -69.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939781346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.339 kcal (2) G-P(sol) polarization free energy of solvation -72.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds