Wall clock time and date at job start Wed Apr 1 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00142 * 2 1 4 4 O 1.42902 * 109.46707 * 135.00025 * 3 2 1 5 5 C 1.35706 * 116.99694 * 180.02562 * 4 3 2 6 6 C 1.38997 * 119.91112 * 180.02562 * 5 4 3 7 7 C 1.37705 * 120.08766 * 179.97438 * 6 5 4 8 8 C 1.39734 * 119.91319 * 0.02562 * 7 6 5 9 9 C 1.47601 * 120.08823 * 180.02562 * 8 7 6 10 10 O 1.21583 * 120.00051 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00006 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00359 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.46040 * 35.02385 * 12 11 9 14 14 C 1.53043 * 109.46089 * 275.07090 * 12 11 9 15 15 C 1.53193 * 109.31479 * 178.61111 * 14 12 11 16 16 N 1.46923 * 108.77151 * 54.63409 * 15 14 12 17 17 C 1.36941 * 120.62840 * 126.37464 * 16 15 14 18 18 H 1.08000 * 120.00110 * 331.83830 * 17 16 15 19 19 C 1.38810 * 120.00122 * 151.84765 * 17 16 15 20 20 N 1.31624 * 119.99795 * 343.06148 * 19 17 16 21 21 Si 1.86802 * 120.00319 * 163.06618 * 19 17 16 22 22 H 1.48500 * 109.46787 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47179 * 119.99361 * 21 19 17 24 24 H 1.48501 * 109.47031 * 239.99984 * 21 19 17 25 25 C 1.46920 * 118.73928 * 306.38975 * 16 15 14 26 26 C 1.53037 * 109.46394 * 155.00014 * 12 11 9 27 27 H 1.09000 * 109.49824 * 61.43256 * 26 12 11 28 28 C 1.52996 * 109.49689 * 301.33868 * 26 12 11 29 29 C 1.39734 * 119.82299 * 0.27523 * 8 7 6 30 30 C 1.37706 * 119.90802 * 359.42202 * 29 8 7 31 31 H 1.08004 * 119.99944 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.00481 * 180.02562 * 1 2 3 33 33 H 1.07997 * 119.99681 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.46809 * 15.00481 * 3 2 1 35 35 H 1.08992 * 109.47047 * 254.99932 * 3 2 1 36 36 H 1.07998 * 119.95566 * 359.97438 * 6 5 4 37 37 H 1.08005 * 120.04592 * 180.02562 * 7 6 5 38 38 H 0.97000 * 119.99777 * 0.27393 * 11 9 8 39 39 H 1.09002 * 109.49504 * 298.56261 * 14 12 11 40 40 H 1.08998 * 109.50204 * 58.65415 * 14 12 11 41 41 H 1.08996 * 109.58477 * 294.84685 * 15 14 12 42 42 H 1.08998 * 109.70067 * 174.48868 * 15 14 12 43 43 H 0.97001 * 119.99802 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.59096 * 293.82067 * 25 16 15 45 45 H 1.09003 * 109.58577 * 173.40273 * 25 16 15 46 46 H 1.09000 * 109.47567 * 59.99538 * 28 26 12 47 47 H 1.09002 * 109.47436 * 180.02562 * 28 26 12 48 48 H 1.09007 * 109.47040 * 300.00039 * 28 26 12 49 49 H 1.07999 * 120.04180 * 179.72360 * 29 8 7 50 50 H 1.07999 * 119.95395 * 180.27515 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9080 2.3436 1.0788 6 6 4.9600 2.3473 1.9873 7 6 5.7554 3.4638 2.1179 8 6 5.5035 4.5942 1.3360 9 6 6.3539 5.7928 1.4724 10 8 7.2754 5.7973 2.2655 11 7 6.1090 6.8823 0.7177 12 6 6.9535 8.0718 0.8527 13 1 7.9798 7.7672 1.0572 14 6 6.4384 8.9344 2.0071 15 6 7.3441 10.1595 2.1675 16 7 7.4235 10.8608 0.8789 17 6 7.1318 12.1960 0.7921 18 1 6.4379 12.6435 1.4882 19 6 7.7278 12.9741 -0.1907 20 7 8.8001 12.5366 -0.8163 21 14 7.0084 14.6423 -0.6255 22 1 5.8118 14.8996 0.2155 23 1 8.0231 15.6984 -0.3796 24 1 6.6179 14.6548 -2.0582 25 6 7.8213 10.1023 -0.3148 26 6 6.9103 8.8779 -0.4475 27 1 5.8881 9.2041 -0.6395 28 6 7.3945 8.0042 -1.6063 29 6 4.4410 4.5887 0.4284 30 6 3.6541 3.4660 0.2993 31 1 -0.5400 0.9353 0.0004 32 1 -0.5401 -0.9353 0.0004 33 1 1.8499 -0.9353 -0.0004 34 1 1.3855 2.1161 0.2661 35 1 2.4755 1.4867 -0.9926 36 1 5.1538 1.4734 2.5915 37 1 6.5729 3.4658 2.8237 38 1 5.3714 6.8801 0.0878 39 1 5.4207 9.2601 1.7920 40 1 6.4473 8.3522 2.9285 41 1 8.3408 9.8397 2.4715 42 1 6.9286 10.8274 2.9220 43 1 9.2168 13.0806 -1.5029 44 1 8.8570 9.7779 -0.2134 45 1 7.7185 10.7318 -1.1988 46 1 6.7477 7.1317 -1.6985 47 1 7.3640 8.5789 -2.5321 48 1 8.4172 7.6797 -1.4141 49 1 4.2404 5.4620 -0.1745 50 1 2.8355 3.4594 -0.4052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942193958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:32 Heat of formation + Delta-G solvation = -28.053742 kcal Electronic energy + Delta-G solvation = -29504.804265 eV Core-core repulsion = 25497.478373 eV Total energy + Delta-G solvation = -4007.325892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.59220 -40.79813 -39.32980 -38.11147 -36.17393 -35.01268 -34.06145 -33.50771 -32.18708 -31.63091 -30.60515 -27.75699 -27.55083 -26.79632 -24.74961 -23.91734 -23.19896 -22.50635 -21.46119 -20.96488 -20.77046 -19.44112 -18.91169 -18.28689 -17.64543 -17.11857 -16.84304 -16.58062 -16.09958 -15.96526 -15.59774 -15.51077 -15.40834 -15.14791 -14.72909 -14.61899 -14.41830 -14.33206 -14.20078 -13.91340 -13.57143 -13.46278 -13.33044 -13.16974 -12.93782 -12.86744 -12.56224 -12.43615 -12.19334 -12.16083 -12.00324 -11.83745 -11.77235 -11.74332 -11.55322 -11.27610 -10.92784 -10.56660 -10.43816 -10.12062 -10.03578 -9.28479 -8.70339 -7.87494 -5.33499 -0.13245 0.30048 1.13157 1.47459 1.49454 1.60198 1.85056 2.16171 2.31455 2.51797 2.83432 3.27736 3.61649 3.66004 3.72278 3.81523 3.84601 3.94959 4.04442 4.09872 4.16416 4.20754 4.30935 4.34810 4.39282 4.53858 4.57603 4.58683 4.68867 4.73864 4.84417 4.92986 4.94357 4.97400 5.00910 5.06952 5.09707 5.15069 5.20496 5.29716 5.34544 5.36244 5.50786 5.53185 5.59263 5.63338 5.66367 5.71012 5.74138 6.32514 6.39153 6.60023 7.14598 7.25855 7.83800 8.37177 9.19496 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.001962 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.148997 B =14266.719617 C =14879.056948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.178 4.178 3 C 0.077 3.923 4 O -0.320 6.320 5 C 0.152 3.848 6 C -0.166 4.166 7 C -0.030 4.030 8 C -0.188 4.188 9 C 0.557 3.443 10 O -0.586 6.586 11 N -0.703 5.703 12 C 0.169 3.831 13 H 0.056 0.944 14 C -0.125 4.125 15 C 0.144 3.856 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.067 0.933 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.267 1.267 23 H -0.295 1.295 24 H -0.287 1.287 25 C 0.188 3.812 26 C -0.107 4.107 27 H 0.077 0.923 28 C -0.133 4.133 29 C -0.037 4.037 30 C -0.213 4.213 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.134 0.866 38 H 0.411 0.589 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.005 0.995 42 H 0.058 0.942 43 H 0.251 0.749 44 H -0.009 1.009 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.057 0.943 48 H 0.041 0.959 49 H 0.153 0.847 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.746 -25.280 -1.876 30.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C 0.003 3.997 4 O -0.234 6.234 5 C 0.106 3.894 6 C -0.184 4.184 7 C -0.049 4.049 8 C -0.192 4.192 9 C 0.347 3.653 10 O -0.468 6.468 11 N -0.354 5.354 12 C 0.064 3.936 13 H 0.074 0.926 14 C -0.165 4.165 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.085 0.915 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.796 3.204 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.214 1.214 25 C 0.062 3.938 26 C -0.128 4.128 27 H 0.095 0.905 28 C -0.191 4.191 29 C -0.055 4.055 30 C -0.231 4.231 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.249 0.751 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.023 0.977 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.009 0.991 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.171 0.829 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.020 -25.355 -1.341 30.567 hybrid contribution 0.114 1.252 -0.454 1.337 sum -16.906 -24.103 -1.795 29.496 Atomic orbital electron populations 1.24128 0.95110 1.03737 0.96702 1.22688 0.96134 0.97487 1.03264 1.22150 0.87377 0.97914 0.92225 1.86056 1.42546 1.35494 1.59260 1.19387 0.90200 0.86178 0.93664 1.20512 0.96091 1.00116 1.01717 1.21098 0.97250 0.90714 0.95803 1.19797 1.00436 0.94953 1.03986 1.18587 0.83552 0.83379 0.79784 1.90753 1.33400 1.83937 1.38693 1.45904 1.34225 1.13282 1.41997 1.20669 0.93725 0.83805 0.95357 0.92614 1.22192 1.00088 0.96327 0.97933 1.20963 0.95879 0.92958 0.88416 1.44361 1.79945 1.05909 1.02979 1.19548 1.18945 0.85444 1.15344 0.91498 1.25816 0.96029 1.01254 1.01351 1.70198 1.20220 1.39442 1.28200 0.85196 0.77899 0.79563 0.77698 1.19084 1.22186 1.21365 1.20606 0.92528 0.90097 0.90561 1.21897 1.01226 0.95856 0.93789 0.90511 1.21682 1.00861 0.99293 0.97218 1.21336 0.91279 0.98544 0.94366 1.21447 1.04412 0.93131 1.04101 0.87221 0.86282 0.86440 0.89903 0.89510 0.83405 0.84844 0.75137 0.91333 0.92262 0.97670 0.92349 0.94033 0.99129 0.91838 0.90586 0.92344 0.94003 0.82903 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 14.31 67.78 0.97 0.02 16 2 C -0.18 -1.53 9.89 25.65 0.25 -1.28 16 3 C 0.08 0.72 5.15 71.24 0.37 1.09 16 4 O -0.32 -4.98 10.11 -90.27 -0.91 -5.89 16 5 C 0.15 2.54 6.70 22.63 0.15 2.69 16 6 C -0.17 -3.07 9.97 22.33 0.22 -2.84 16 7 C -0.03 -0.66 9.58 22.51 0.22 -0.44 16 8 C -0.19 -4.33 5.87 -20.08 -0.12 -4.45 16 9 C 0.56 16.56 7.73 86.71 0.67 17.23 16 10 O -0.59 -22.57 16.00 -3.98 -0.06 -22.64 16 11 N -0.70 -18.84 4.31 -445.52 -1.92 -20.75 16 12 C 0.17 5.84 1.88 45.02 0.08 5.92 16 13 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 14 C -0.13 -4.57 5.65 30.67 0.17 -4.39 16 15 C 0.14 6.35 6.52 86.36 0.56 6.91 16 16 N -0.61 -30.91 2.99 -699.13 -2.09 -33.00 16 17 C -0.26 -14.44 9.58 84.03 0.81 -13.64 16 18 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 19 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 20 N -0.93 -55.12 11.20 21.65 0.24 -54.87 16 21 Si 0.97 44.45 29.59 68.60 2.03 46.48 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 25 C 0.19 9.00 4.59 86.36 0.40 9.39 16 26 C -0.11 -3.79 2.46 -10.72 -0.03 -3.82 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 C -0.13 -3.90 9.03 71.98 0.65 -3.25 16 29 C -0.04 -0.59 9.53 22.51 0.21 -0.38 16 30 C -0.21 -2.92 9.01 22.33 0.20 -2.72 16 31 H 0.11 0.44 7.90 -2.91 -0.02 0.41 16 32 H 0.12 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.08 0.56 7.37 -2.39 -0.02 0.54 16 35 H 0.09 0.59 7.65 -2.39 -0.02 0.58 16 36 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.13 3.14 7.64 -2.91 -0.02 3.12 16 38 H 0.41 8.13 6.34 -92.71 -0.59 7.54 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 43 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 44 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 45 H 0.06 3.39 6.06 -2.39 -0.01 3.38 16 46 H 0.08 1.73 7.37 -2.39 -0.02 1.71 16 47 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 49 H 0.15 1.67 6.39 -2.91 -0.02 1.65 16 50 H 0.16 1.23 6.28 -2.91 -0.02 1.21 16 Total: -1.00 -71.58 403.75 3.84 -67.74 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.35 Total: 19.18 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 6.21 Total: 3.76 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -3.77 Total: -108.63 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.98 Total: -28.53 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -71.58 3.84 -67.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942193958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.684 kcal (2) G-P(sol) polarization free energy of solvation -71.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds