Wall clock time and date at job start Wed Apr 1 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.49379 * 2 1 4 4 C 1.53625 * 109.43139 * 120.21769 * 2 1 3 5 5 N 1.46934 * 108.54348 * 174.72566 * 4 2 1 6 6 C 1.36943 * 120.62782 * 126.37064 * 5 4 2 7 7 H 1.07993 * 119.99880 * 332.96201 * 6 5 4 8 8 C 1.38806 * 119.99459 * 152.96531 * 6 5 4 9 9 N 1.31626 * 119.99805 * 158.74910 * 8 6 5 10 10 Si 1.86795 * 120.00497 * 339.02394 * 8 6 5 11 11 H 1.48499 * 109.47486 * 95.06923 * 10 8 6 12 12 H 1.48501 * 109.47225 * 215.07472 * 10 8 6 13 13 H 1.48500 * 109.47084 * 335.07061 * 10 8 6 14 14 C 1.46921 * 118.73894 * 306.09912 * 5 4 2 15 15 C 1.53191 * 108.77688 * 53.85870 * 14 5 4 16 16 C 1.53038 * 109.50087 * 239.93197 * 2 1 3 17 17 H 1.08998 * 109.46071 * 58.66349 * 16 2 1 18 18 N 1.46497 * 109.46017 * 298.70356 * 16 2 1 19 19 C 1.34774 * 120.00402 * 154.93177 * 18 16 2 20 20 O 1.21559 * 119.99626 * 359.97438 * 19 18 16 21 21 C 1.47844 * 120.00605 * 180.02562 * 19 18 16 22 22 C 1.39465 * 120.00842 * 359.97438 * 21 19 18 23 23 C 1.37933 * 119.69653 * 180.02562 * 22 21 19 24 24 C 1.38214 * 120.05768 * 0.08809 * 23 22 21 25 25 C 1.38752 * 120.61158 * 359.94742 * 24 23 22 26 26 C 1.37670 * 119.86585 * 359.61497 * 25 24 23 27 27 C 1.50710 * 121.42402 * 180.26984 * 26 25 24 28 28 C 1.52972 * 109.84183 * 343.39216 * 27 26 25 29 29 O 1.43218 * 108.46012 * 48.92718 * 28 27 26 30 30 C 1.42717 * 113.13289 * 289.42387 * 29 28 27 31 31 H 1.09001 * 109.46890 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47724 * 300.06445 * 1 2 3 33 33 H 1.08999 * 109.47275 * 60.07071 * 1 2 3 34 34 H 1.09002 * 109.73812 * 54.99108 * 4 2 1 35 35 H 1.08996 * 109.66903 * 294.42029 * 4 2 1 36 36 H 0.96994 * 120.00149 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.58962 * 173.64479 * 14 5 4 38 38 H 1.08998 * 109.58398 * 293.92843 * 14 5 4 39 39 H 1.08994 * 109.49942 * 65.31941 * 15 14 5 40 40 H 1.08998 * 109.49537 * 185.38469 * 15 14 5 41 41 H 0.97000 * 119.99703 * 334.92773 * 18 16 2 42 42 H 1.08002 * 120.14991 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.97152 * 180.10479 * 23 22 21 44 44 H 1.07999 * 119.69528 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.57590 * 223.16413 * 27 26 25 46 46 H 1.09005 * 109.20675 * 103.39321 * 27 26 25 47 47 H 1.09002 * 109.63964 * 289.24102 * 28 27 26 48 48 H 1.09002 * 109.64513 * 168.61495 * 28 27 26 49 49 H 1.09004 * 109.33708 * 291.55108 * 30 29 28 50 50 H 1.09001 * 109.20410 * 171.96337 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0410 -0.7291 1.2519 5 7 3.5046 -0.8293 1.1695 6 6 4.2935 -0.3797 2.1945 7 1 3.9405 0.4099 2.8412 8 6 5.5469 -0.9388 2.4022 9 7 6.4613 -0.2728 3.0750 10 14 5.9384 -2.6333 1.7204 11 1 6.6116 -2.4938 0.4041 12 1 6.8356 -3.3505 2.6617 13 1 4.6793 -3.4027 1.5533 14 6 4.1053 -1.4265 -0.0310 15 6 3.5709 -0.6946 -1.2660 16 6 2.0408 -0.7228 -1.2485 17 1 1.6582 -0.2240 -2.1389 18 7 1.5784 -2.1127 -1.2312 19 6 1.4490 -2.7943 -2.3867 20 8 1.7156 -2.2555 -3.4433 21 6 0.9818 -4.1969 -2.3694 22 6 0.6753 -4.8151 -1.1574 23 6 0.2405 -6.1241 -1.1488 24 6 0.1115 -6.8186 -2.3368 25 6 0.4150 -6.2112 -3.5468 26 6 0.8413 -4.9024 -3.5690 27 6 1.1745 -4.2064 -4.8636 28 6 1.3652 -5.2403 -5.9748 29 8 0.2548 -6.1444 -5.9485 30 6 0.2643 -7.0112 -4.8148 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3634 0.5127 -0.8906 34 1 1.6084 -1.7286 1.2982 35 1 1.7629 -0.1667 2.1432 36 1 7.3371 -0.6636 3.2205 37 1 5.1896 -1.3244 0.0135 38 1 3.8397 -2.4822 -0.0858 39 1 3.9159 0.3392 -1.2539 40 1 3.9339 -1.1888 -2.1672 41 1 1.3654 -2.5426 -0.3882 42 1 0.7781 -4.2714 -0.2299 43 1 0.0004 -6.6067 -0.2129 44 1 -0.2291 -7.8434 -2.3231 45 1 2.0921 -3.6306 -4.7430 46 1 0.3585 -3.5345 -5.1299 47 1 2.2905 -5.7916 -5.8073 48 1 1.4049 -4.7369 -6.9408 49 1 1.0963 -7.7100 -4.9017 50 1 -0.6723 -7.5678 -4.7812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942445296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:57 Heat of formation + Delta-G solvation = -49.407736 kcal Electronic energy + Delta-G solvation = -31535.605576 eV Core-core repulsion = 27527.353705 eV Total energy + Delta-G solvation = -4008.251871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.93657 -40.78925 -39.27792 -38.33170 -36.18460 -34.28717 -33.83834 -33.40402 -32.95230 -31.84309 -30.48160 -27.81473 -27.11042 -26.57064 -25.13268 -24.57383 -23.54999 -23.17840 -21.75716 -21.15886 -20.22114 -19.01013 -18.64596 -17.54117 -17.39295 -17.15113 -16.89421 -16.53066 -16.45157 -16.20568 -15.96100 -15.68666 -15.25966 -15.15893 -15.03698 -14.93523 -14.34130 -14.30609 -14.22801 -13.90213 -13.66204 -13.47576 -13.31431 -13.22969 -12.93992 -12.89048 -12.83378 -12.73101 -12.45024 -12.27999 -12.12286 -11.93943 -11.70623 -11.62533 -11.45412 -11.30368 -11.02227 -10.74273 -10.39496 -10.16763 -9.78815 -9.66352 -8.95289 -8.18802 -5.49387 -0.20660 0.25901 1.27227 1.35964 1.44441 1.81165 2.13112 2.38650 2.73594 2.90624 3.00962 3.31042 3.57227 3.60552 3.66214 3.73940 3.88606 3.92290 4.02002 4.04321 4.19344 4.20048 4.30351 4.37327 4.38048 4.47789 4.52135 4.53680 4.55897 4.69025 4.74778 4.78550 4.81418 4.85224 4.90123 4.92098 4.93123 4.99727 5.08185 5.13302 5.19178 5.26909 5.27796 5.36366 5.42298 5.50202 5.57642 5.84396 5.85418 6.09697 6.11470 6.49843 6.88474 7.16299 7.59922 8.00307 9.00935 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.003360 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.194053 B = 8330.809290 C = 8864.376907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 H 0.078 0.922 4 C 0.150 3.850 5 N -0.616 5.616 6 C -0.243 4.243 7 H 0.059 0.941 8 C -0.032 4.032 9 N -0.955 5.955 10 Si 0.940 3.060 11 H -0.290 1.290 12 H -0.311 1.311 13 H -0.255 1.255 14 C 0.131 3.869 15 C -0.139 4.139 16 C 0.168 3.832 17 H 0.084 0.916 18 N -0.705 5.705 19 C 0.553 3.447 20 O -0.563 6.563 21 C -0.156 4.156 22 C -0.089 4.089 23 C -0.128 4.128 24 C -0.078 4.078 25 C -0.142 4.142 26 C -0.036 4.036 27 C -0.113 4.113 28 C 0.058 3.942 29 O -0.393 6.393 30 C 0.100 3.900 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.260 0.740 37 H 0.041 0.959 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.405 0.595 42 H 0.136 0.864 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.112 0.888 49 H 0.082 0.918 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 -14.514 -13.887 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.026 3.974 5 N -0.340 5.340 6 C -0.373 4.373 7 H 0.076 0.924 8 C -0.227 4.227 9 N -0.602 5.602 10 Si 0.770 3.230 11 H -0.217 1.217 12 H -0.240 1.240 13 H -0.179 1.179 14 C 0.006 3.994 15 C -0.179 4.179 16 C 0.064 3.936 17 H 0.102 0.898 18 N -0.357 5.357 19 C 0.343 3.657 20 O -0.445 6.445 21 C -0.159 4.159 22 C -0.107 4.107 23 C -0.146 4.146 24 C -0.096 4.096 25 C -0.143 4.143 26 C -0.037 4.037 27 C -0.150 4.150 28 C -0.018 4.018 29 O -0.311 6.311 30 C 0.024 3.976 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.243 0.757 42 H 0.153 0.847 43 H 0.177 0.823 44 H 0.182 0.818 45 H 0.113 0.887 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.130 0.870 49 H 0.100 0.900 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.211 -14.100 -14.677 26.654 hybrid contribution 1.239 -0.305 0.817 1.515 sum -15.972 -14.405 -13.860 25.587 Atomic orbital electron populations 1.21692 0.92566 1.02387 1.02506 1.21882 0.97069 0.99837 0.94091 0.90352 1.21250 0.81670 0.97888 0.96639 1.44463 1.02346 1.71993 1.15171 1.18885 0.97621 1.12968 1.07797 0.92372 1.25825 0.96606 1.01110 0.99173 1.69966 1.04687 1.38440 1.47057 0.86009 0.77834 0.83104 0.76050 1.21737 1.24014 1.17906 1.21195 0.96328 0.95136 0.86717 1.22284 0.96766 1.01396 0.97453 1.20768 0.92444 0.81397 0.99031 0.89776 1.46012 1.66864 1.13846 1.08952 1.18563 0.77062 0.86441 0.83672 1.90679 1.52368 1.70469 1.30946 1.19887 1.07150 0.93898 0.95002 1.21548 0.96345 0.96373 0.96455 1.21414 0.99607 0.93676 0.99900 1.21586 0.96088 1.01246 0.90677 1.20525 1.01725 0.94044 0.97979 1.19738 0.95779 0.93823 0.94324 1.21292 1.03833 0.98019 0.91826 1.22824 0.89039 0.90407 0.99577 1.88037 1.47828 1.50967 1.44301 1.21665 1.04630 0.90629 0.80708 0.92151 0.91289 0.92161 0.94260 0.91729 0.93049 0.94050 0.95232 0.91317 0.92237 0.75730 0.84673 0.82330 0.81847 0.88717 0.90904 0.91977 0.86996 0.90046 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.05 71.98 0.65 -2.21 16 2 C -0.11 -3.07 2.69 -10.57 -0.03 -3.10 16 3 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 4 C 0.15 5.13 5.53 86.51 0.48 5.60 16 5 N -0.62 -27.43 2.77 -698.26 -1.94 -29.37 16 6 C -0.24 -13.36 10.04 84.03 0.84 -12.51 16 7 H 0.06 3.47 8.05 -2.91 -0.02 3.44 16 8 C -0.03 -1.87 5.23 84.86 0.44 -1.43 16 9 N -0.96 -59.74 13.97 21.65 0.30 -59.44 16 10 Si 0.94 46.58 24.35 68.60 1.67 48.25 16 11 H -0.29 -14.18 6.70 99.48 0.67 -13.51 16 12 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 13 H -0.25 -11.75 6.49 99.48 0.65 -11.11 16 14 C 0.13 5.56 3.94 86.36 0.34 5.90 16 15 C -0.14 -5.00 5.77 30.67 0.18 -4.82 16 16 C 0.17 5.05 2.21 45.02 0.10 5.15 16 17 H 0.08 2.54 7.57 -2.39 -0.02 2.53 16 18 N -0.70 -19.48 3.55 -445.28 -1.58 -21.07 16 19 C 0.55 16.36 7.70 86.79 0.67 17.03 16 20 O -0.56 -19.28 12.84 -3.90 -0.05 -19.33 16 21 C -0.16 -3.99 5.88 -20.04 -0.12 -4.11 16 22 C -0.09 -1.81 9.54 22.49 0.21 -1.59 16 23 C -0.13 -1.98 10.03 22.19 0.22 -1.76 16 24 C -0.08 -1.10 9.66 22.39 0.22 -0.89 16 25 C -0.14 -2.65 5.80 -19.88 -0.12 -2.77 16 26 C -0.04 -0.87 5.81 -19.60 -0.11 -0.98 16 27 C -0.11 -2.79 4.55 29.84 0.14 -2.65 16 28 C 0.06 1.12 6.85 71.97 0.49 1.61 16 29 O -0.39 -7.90 10.80 -148.98 -1.61 -9.51 16 30 C 0.10 1.47 6.66 71.23 0.47 1.94 16 31 H 0.06 1.19 7.54 -2.39 -0.02 1.17 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.04 1.19 6.63 -2.39 -0.02 1.18 16 35 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 36 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.04 2.00 4.49 -2.39 -0.01 1.99 16 38 H 0.03 1.23 6.60 -2.39 -0.02 1.21 16 39 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.40 10.12 4.74 -92.71 -0.44 9.68 16 42 H 0.14 2.43 6.39 -2.91 -0.02 2.42 16 43 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 45 H 0.09 2.72 6.00 -2.39 -0.01 2.70 16 46 H 0.07 1.96 8.10 -2.38 -0.02 1.95 16 47 H 0.06 1.09 8.07 -2.39 -0.02 1.07 16 48 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -71.47 377.20 2.29 -69.17 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.41 Total: 22.85 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.08 Total: -1.56 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -3.21 Total: -109.87 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.66 Total: -28.84 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Total: -71.47 2.29 -69.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942445296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.764 kcal (2) G-P(sol) polarization free energy of solvation -71.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds