Wall clock time and date at job start Wed Apr 1 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47143 * 2 1 4 4 C 1.50704 * 109.47095 * 119.99643 * 2 1 3 5 5 O 1.21284 * 119.99886 * 103.58218 * 4 2 1 6 6 N 1.34776 * 120.00323 * 283.58972 * 4 2 1 7 7 C 1.47085 * 125.62618 * 4.04680 * 6 4 2 8 8 C 1.54454 * 107.29292 * 180.95376 * 7 6 4 9 9 C 1.54377 * 102.87423 * 21.49765 * 8 7 6 10 10 C 1.47570 * 125.63335 * 183.74204 * 6 4 2 11 11 C 1.52356 * 110.37661 * 207.57260 * 9 8 7 12 12 N 1.47330 * 108.40794 * 286.62119 * 11 9 8 13 13 C 1.36943 * 121.08121 * 130.82705 * 12 11 9 14 14 H 1.07997 * 120.00213 * 205.19311 * 13 12 11 15 15 C 1.38818 * 119.99383 * 25.20310 * 13 12 11 16 16 N 1.31617 * 120.00409 * 16.17769 * 15 13 12 17 17 Si 1.86803 * 119.99614 * 196.17292 * 15 13 12 18 18 H 1.48503 * 109.46936 * 60.00174 * 17 15 13 19 19 H 1.48500 * 109.47022 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47582 * 300.00249 * 17 15 13 21 21 C 1.47165 * 117.84412 * 310.83452 * 12 11 9 22 22 C 1.53287 * 108.57572 * 51.21634 * 21 12 11 23 23 O 1.41889 * 110.70145 * 83.68425 * 9 8 7 24 24 C 1.50695 * 109.47216 * 239.99641 * 2 1 3 25 25 C 1.38243 * 119.99876 * 299.73168 * 24 2 1 26 26 C 1.38237 * 119.99611 * 179.78621 * 25 24 2 27 27 C 1.38233 * 120.00178 * 0.44175 * 26 25 24 28 28 C 1.38235 * 120.00152 * 359.80831 * 27 26 25 29 29 C 1.38228 * 120.00212 * 119.99925 * 24 2 1 30 30 H 1.08998 * 109.47483 * 173.31647 * 1 2 3 31 31 H 1.09001 * 109.47122 * 293.31270 * 1 2 3 32 32 H 1.09001 * 109.47484 * 53.31105 * 1 2 3 33 33 H 1.09005 * 109.88050 * 300.37661 * 7 6 4 34 34 H 1.08999 * 109.87679 * 61.52863 * 7 6 4 35 35 H 1.09001 * 110.73807 * 139.84692 * 8 7 6 36 36 H 1.09006 * 110.73066 * 262.97322 * 8 7 6 37 37 H 1.09002 * 110.37587 * 275.55051 * 10 6 4 38 38 H 1.09003 * 110.37719 * 37.89296 * 10 6 4 39 39 H 1.09003 * 109.67630 * 46.35146 * 11 9 8 40 40 H 1.09003 * 109.67496 * 166.89044 * 11 9 8 41 41 H 0.96997 * 119.99788 * 179.97438 * 16 15 13 42 42 H 1.09006 * 109.61448 * 291.49482 * 21 12 11 43 43 H 1.09000 * 109.77094 * 171.03565 * 21 12 11 44 44 H 1.08997 * 109.50910 * 187.08557 * 22 21 12 45 45 H 1.08995 * 109.51314 * 66.93027 * 22 21 12 46 46 H 1.07994 * 120.00046 * 359.97438 * 25 24 2 47 47 H 1.07998 * 119.99843 * 180.27295 * 26 25 24 48 48 H 1.08003 * 119.99879 * 179.83274 * 27 26 25 49 49 H 1.07998 * 119.99916 * 180.02562 * 28 27 26 50 50 H 1.08002 * 119.99958 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4670 -1.8393 1.1440 6 7 1.9984 -0.0912 2.4272 7 6 1.4232 1.2370 2.6886 8 6 1.6330 1.5411 4.1883 9 6 2.7987 0.6037 4.5696 10 6 2.5266 -0.6365 3.6926 11 6 2.7244 0.2385 6.0469 12 7 3.1291 1.4138 6.8376 13 6 2.3699 1.8542 7.8888 14 1 2.4204 2.8885 8.1955 15 6 1.5357 0.9710 8.5604 16 7 1.6972 -0.3271 8.4144 17 14 0.1838 1.6248 9.6714 18 1 -0.7480 2.4640 8.8759 19 1 -0.5615 0.4866 10.2667 20 1 0.7855 2.4435 10.7542 21 6 4.3756 2.0995 6.4611 22 6 4.3319 2.4022 4.9590 23 8 4.0460 1.1961 4.2435 24 6 2.0323 -0.7105 -1.2304 25 6 1.7029 -2.0356 -1.4462 26 6 2.1601 -2.6860 -2.5771 27 6 2.9541 -2.0140 -3.4875 28 6 3.2878 -0.6904 -3.2690 29 6 2.8270 -0.0388 -2.1403 30 1 -0.3634 -1.0206 -0.1196 31 1 -0.3633 0.4067 0.9438 32 1 -0.3634 0.6140 -0.8241 33 1 1.9324 1.9872 2.0835 34 1 0.3581 1.2317 2.4569 35 1 1.9128 2.5843 4.3351 36 1 0.7369 1.2994 4.7601 37 1 1.7873 -1.2835 4.1650 38 1 3.4518 -1.1841 3.5131 39 1 1.7033 -0.0433 6.3043 40 1 3.3983 -0.5929 6.2538 41 1 1.1145 -0.9442 8.8839 42 1 5.2278 1.4560 6.6801 43 1 4.4673 3.0310 7.0197 44 1 5.2966 2.7956 4.6388 45 1 3.5531 3.1378 4.7584 46 1 1.0860 -2.5618 -0.7329 47 1 1.8992 -3.7200 -2.7480 48 1 3.3135 -2.5230 -4.3697 49 1 3.9078 -0.1654 -3.9805 50 1 3.0876 0.9954 -1.9697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972644526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:17 Heat of formation + Delta-G solvation = -19.308876 kcal Electronic energy + Delta-G solvation = -31155.774286 eV Core-core repulsion = 27148.827600 eV Total energy + Delta-G solvation = -4006.946686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.55758 -39.52425 -38.34310 -36.09662 -34.49740 -34.25630 -31.53433 -31.26065 -30.96353 -29.57092 -29.43685 -27.46329 -25.96208 -24.64854 -23.54691 -22.78308 -22.57678 -21.69548 -21.01519 -19.25174 -18.61407 -17.21630 -17.03567 -16.86084 -16.12346 -15.55414 -15.40118 -15.05529 -14.92558 -14.55415 -14.40862 -14.26768 -13.93486 -13.71461 -13.44062 -13.35382 -13.11903 -12.96970 -12.78928 -12.74502 -12.39762 -12.27397 -12.06678 -12.00400 -11.70635 -11.37281 -11.09531 -11.08731 -11.02239 -10.88428 -10.86544 -10.72422 -10.34345 -10.31183 -9.98191 -9.64324 -9.57234 -9.09449 -8.92087 -8.79154 -8.58447 -8.42121 -6.80563 -5.88867 -3.31625 1.25567 1.37948 2.76422 3.10549 3.31005 3.37511 3.38020 3.76580 4.15438 4.38174 4.43283 4.53709 4.80871 4.88299 4.90868 4.99656 5.03730 5.08445 5.11492 5.20247 5.30820 5.38918 5.42172 5.46249 5.53729 5.56688 5.61967 5.71482 5.78062 5.83857 5.89009 5.95739 5.97755 6.01341 6.04993 6.13389 6.25563 6.29544 6.37530 6.42729 6.46038 6.49095 6.57032 6.61876 6.75365 6.93738 7.02849 7.40903 7.65745 7.69452 7.90217 8.26913 8.30402 9.05842 9.68830 10.25995 11.19386 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.002616 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.869717 B =10700.927380 C =11154.581340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 H 0.099 0.901 4 C 0.533 3.467 5 O -0.537 6.537 6 N -0.610 5.610 7 C 0.102 3.898 8 C -0.144 4.144 9 C 0.086 3.914 10 C 0.125 3.875 11 C 0.163 3.837 12 N -0.593 5.593 13 C -0.253 4.253 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.904 5.904 17 Si 0.904 3.096 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.374 6.374 24 C -0.070 4.070 25 C -0.078 4.078 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.127 4.127 29 C -0.112 4.112 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.029 0.971 41 H 0.256 0.744 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 2.611 -20.014 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 H 0.117 0.883 4 C 0.321 3.679 5 O -0.414 6.414 6 N -0.343 5.343 7 C -0.021 4.021 8 C -0.182 4.182 9 C 0.044 3.956 10 C 0.002 3.998 11 C 0.036 3.964 12 N -0.316 5.316 13 C -0.382 4.382 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.734 3.266 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 C -0.017 4.017 22 C -0.031 4.031 23 O -0.293 6.293 24 C -0.071 4.071 25 C -0.096 4.096 26 C -0.144 4.144 27 C -0.140 4.140 28 C -0.145 4.145 29 C -0.130 4.130 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.283 1.760 -20.149 20.266 hybrid contribution -0.710 0.531 0.937 1.290 sum -1.994 2.291 -19.212 19.450 Atomic orbital electron populations 1.21807 0.91870 1.03215 1.02935 1.20218 0.97823 1.00010 0.90784 0.88316 1.20019 0.78600 0.86202 0.83072 1.90702 1.46989 1.18377 1.85333 1.48532 1.58885 1.19003 1.07902 1.22176 0.97621 0.84178 0.98124 1.23031 1.00413 1.01769 0.93006 1.22726 0.83528 0.91652 0.97736 1.22140 0.99697 0.95378 0.82536 1.21162 1.02553 0.89073 0.83586 1.44067 1.21386 1.32448 1.33745 1.19131 1.18529 0.93156 1.07357 0.91351 1.25023 1.01218 0.95157 0.98218 1.69991 1.39032 1.00610 1.45190 0.86345 0.82050 0.77767 0.80470 1.20986 1.21551 1.20856 1.21586 0.90148 0.97107 0.92905 1.23095 0.99519 0.86505 0.94030 1.87652 1.36653 1.40340 1.64645 1.19373 0.98407 0.94574 0.94726 1.20998 0.98793 0.93708 0.96066 1.21134 0.98668 0.99852 0.94703 1.21127 0.98573 0.94859 0.99401 1.21046 1.00616 0.95068 0.97755 1.21016 0.97615 0.99845 0.94556 0.91719 0.91408 0.91244 0.91779 0.91527 0.89577 0.89398 0.89695 0.89915 0.88214 0.95267 0.93355 0.95581 0.91922 0.89997 0.93481 0.85898 0.86213 0.86375 0.86232 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.04 37.16 0.34 -1.00 16 2 C -0.07 -0.78 2.29 -92.93 -0.21 -0.99 16 3 H 0.10 1.01 7.39 -51.93 -0.38 0.63 16 4 C 0.53 8.25 6.99 -10.98 -0.08 8.18 16 5 O -0.54 -10.10 14.92 5.55 0.08 -10.01 16 6 N -0.61 -9.40 3.33 -170.64 -0.57 -9.97 16 7 C 0.10 1.34 6.13 -2.96 -0.02 1.32 16 8 C -0.14 -2.31 5.86 -25.25 -0.15 -2.45 16 9 C 0.09 1.59 0.84 -89.54 -0.08 1.51 16 10 C 0.12 2.20 6.08 -2.77 -0.02 2.18 16 11 C 0.16 3.69 4.08 -3.92 -0.02 3.67 16 12 N -0.59 -14.06 2.98 -172.24 -0.51 -14.58 16 13 C -0.25 -6.52 9.68 -15.05 -0.15 -6.67 16 14 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 15 C 0.00 0.07 4.98 -17.43 -0.09 -0.02 16 16 N -0.90 -25.07 11.05 55.49 0.61 -24.45 16 17 Si 0.90 20.71 29.58 -169.99 -5.03 15.68 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 C 0.11 2.19 6.71 -3.53 -0.02 2.17 16 22 C 0.05 0.79 6.78 37.31 0.25 1.04 16 23 O -0.37 -7.09 10.30 -35.22 -0.36 -7.45 16 24 C -0.07 -0.86 4.57 -104.63 -0.48 -1.34 16 25 C -0.08 -0.98 7.76 -39.58 -0.31 -1.28 16 26 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 27 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 28 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 29 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 30 H 0.06 0.64 7.19 -51.93 -0.37 0.27 16 31 H 0.07 0.62 6.01 -51.93 -0.31 0.31 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.07 0.73 6.33 -51.93 -0.33 0.41 16 35 H 0.09 1.37 6.07 -51.93 -0.32 1.06 16 36 H 0.09 1.48 7.83 -51.93 -0.41 1.08 16 37 H 0.08 1.48 8.00 -51.93 -0.42 1.07 16 38 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 39 H 0.10 2.47 5.89 -51.93 -0.31 2.16 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.77 6.22 -51.93 -0.32 0.45 16 46 H 0.12 1.59 7.07 -52.49 -0.37 1.22 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 49 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 50 H 0.12 1.08 7.95 -52.49 -0.42 0.67 16 LS Contribution 387.86 15.07 5.84 5.84 Total: -1.00 -31.03 387.86 -10.23 -41.25 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.70 Total: 4.07 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.59 Total: -0.38 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.47 Total: -49.00 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.28 Total: -17.47 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.03 -10.23 -41.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972644526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.943 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds