Wall clock time and date at job start Wed Apr 1 2020 03:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.83014 * 2 1 4 4 C 1.54694 * 110.93988 * 123.75778 * 2 1 3 5 5 O 1.43762 * 102.80792 * 92.86550 * 4 2 1 6 6 C 1.35999 * 109.25601 * 28.00131 * 5 4 2 7 7 C 1.39586 * 129.73549 * 161.13348 * 6 5 4 8 8 C 1.37467 * 120.42894 * 179.29257 * 7 6 5 9 9 C 1.39756 * 120.20270 * 359.49378 * 8 7 6 10 10 C 1.47609 * 120.26941 * 180.41813 * 9 8 7 11 11 O 1.21577 * 119.99742 * 180.26757 * 10 9 8 12 12 N 1.34775 * 119.99592 * 0.27348 * 10 9 8 13 13 C 1.46499 * 119.99617 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.64414 * 31.86043 * 13 12 10 15 15 C 1.54319 * 110.72015 * 268.52142 * 13 12 10 16 16 N 1.47025 * 107.27339 * 263.82977 * 15 13 12 17 17 C 1.36937 * 125.64948 * 181.01859 * 16 15 13 18 18 H 1.08000 * 119.99889 * 180.02562 * 17 16 15 19 19 C 1.38810 * 120.00059 * 0.04691 * 17 16 15 20 20 N 1.31615 * 120.00211 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99942 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47288 * 59.99989 * 21 19 17 23 23 H 1.48502 * 109.47128 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46826 * 299.99857 * 21 19 17 25 25 C 1.47426 * 108.69845 * 1.05997 * 16 15 13 26 26 C 1.54906 * 104.83373 * 335.87090 * 25 16 15 27 27 C 1.53006 * 111.00296 * 278.93482 * 26 25 16 28 28 C 1.53003 * 111.03590 * 155.09970 * 26 25 16 29 29 C 1.39818 * 119.46596 * 0.69007 * 9 8 7 30 30 C 1.37310 * 119.85542 * 359.75055 * 29 9 8 31 31 H 1.09001 * 109.47170 * 183.71616 * 1 2 3 32 32 H 1.09006 * 109.47122 * 303.71127 * 1 2 3 33 33 H 1.09000 * 109.47370 * 63.71085 * 1 2 3 34 34 H 1.09004 * 110.73999 * 211.18938 * 4 2 1 35 35 H 1.08994 * 110.75015 * 334.35019 * 4 2 1 36 36 H 1.08002 * 119.78170 * 359.00883 * 7 6 5 37 37 H 1.08003 * 119.90285 * 179.72388 * 8 7 6 38 38 H 0.96994 * 120.00299 * 0.02562 * 12 10 9 39 39 H 1.08994 * 109.88710 * 23.25146 * 15 13 12 40 40 H 1.09006 * 109.88251 * 144.41303 * 15 13 12 41 41 H 0.97001 * 120.00291 * 179.97438 * 20 19 17 42 42 H 1.09009 * 110.36181 * 217.02852 * 25 16 15 43 43 H 1.08994 * 110.45755 * 94.76176 * 25 16 15 44 44 H 1.09000 * 109.46537 * 172.19775 * 27 26 25 45 45 H 1.09001 * 109.47232 * 292.19654 * 27 26 25 46 46 H 1.08996 * 109.47250 * 52.20063 * 27 26 25 47 47 H 1.08999 * 109.46833 * 307.78654 * 28 26 25 48 48 H 1.09003 * 109.46741 * 67.78427 * 28 26 25 49 49 H 1.08997 * 109.46601 * 187.78238 * 28 26 25 50 50 H 1.07997 * 120.06804 * 179.73683 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0829 -0.8028 1.2012 5 8 2.2622 -2.1183 0.6498 6 6 2.4971 -2.0166 -0.6859 7 6 3.0652 -2.9403 -1.5648 8 6 3.2005 -2.6393 -2.8993 9 6 2.7599 -1.4073 -3.3904 10 6 2.8961 -1.0863 -4.8247 11 8 2.5155 -0.0111 -5.2457 12 7 3.4422 -1.9851 -5.6674 13 6 3.5768 -1.6667 -7.0911 14 1 3.7402 -0.5983 -7.2321 15 6 2.3363 -2.1416 -7.8765 16 7 2.6574 -3.4590 -8.4449 17 6 1.8265 -4.2139 -9.2291 18 1 2.1572 -5.1733 -9.5988 19 6 0.5595 -3.7460 -9.5490 20 7 0.1568 -2.5764 -9.0992 21 14 -0.5742 -4.7761 -10.6181 22 1 -0.8302 -6.0800 -9.9552 23 1 -1.8596 -4.0581 -10.8120 24 1 0.0661 -5.0089 -11.9376 25 6 4.0218 -3.8329 -8.0301 26 6 4.7280 -2.4871 -7.7305 27 6 5.2209 -1.8275 -9.0201 28 6 5.8795 -2.6794 -6.7416 29 6 2.1942 -0.4790 -2.5111 30 6 2.0720 -0.7862 -1.1784 31 1 -0.3633 -1.0255 0.0666 32 1 -0.3634 0.5704 0.8549 33 1 -0.3634 0.4551 -0.9214 34 1 3.0353 -0.3911 1.5351 35 1 1.3628 -0.8189 2.0192 36 1 3.4047 -3.8958 -1.1932 37 1 3.6453 -3.3586 -3.5711 38 1 3.7453 -2.8431 -5.3316 39 1 1.4821 -2.2260 -7.2048 40 1 2.1124 -1.4369 -8.6774 41 1 -0.7285 -2.2493 -9.3231 42 1 4.5329 -4.3584 -8.8368 43 1 3.9911 -4.4529 -7.1342 44 1 5.5874 -0.8252 -8.7984 45 1 6.0277 -2.4231 -9.4475 46 1 4.3989 -1.7644 -9.7331 47 1 5.5178 -3.2117 -5.8619 48 1 6.6728 -3.2575 -7.2155 49 1 6.2682 -1.7058 -6.4429 50 1 1.8544 0.4777 -2.8794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974938499.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:10 Heat of formation + Delta-G solvation = -15.972233 kcal Electronic energy + Delta-G solvation = -30755.689569 eV Core-core repulsion = 26748.887570 eV Total energy + Delta-G solvation = -4006.801999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48864 -39.85009 -38.20659 -36.85584 -34.29556 -33.84154 -33.01247 -30.70564 -30.53742 -30.08504 -27.95806 -27.02364 -26.75493 -25.61335 -24.17202 -23.06778 -22.85643 -21.22874 -20.45655 -19.84932 -18.79794 -17.54220 -17.40065 -16.69496 -16.66754 -16.23481 -15.61144 -14.88815 -14.77561 -14.26504 -14.14872 -13.96728 -13.89040 -13.80549 -13.59085 -13.38811 -13.21284 -13.09695 -12.70877 -12.55454 -12.52480 -12.05386 -11.96109 -11.92804 -11.65046 -11.38303 -11.34751 -11.08354 -11.02907 -10.94682 -10.80623 -10.74341 -10.38629 -10.24706 -9.99621 -9.86347 -9.61774 -9.55766 -9.11058 -8.61300 -8.50140 -8.24625 -6.80185 -5.66191 -3.01159 0.81186 1.17646 2.88520 3.07650 3.42530 3.46663 3.48712 3.50847 3.87888 4.04628 4.28403 4.52448 4.60065 4.63504 4.86404 4.92393 5.00995 5.05325 5.07203 5.19655 5.25500 5.29631 5.32905 5.41511 5.42650 5.56028 5.64781 5.65648 5.82887 5.84616 5.90067 5.94110 6.02149 6.04350 6.16787 6.18123 6.20201 6.24322 6.28290 6.32376 6.41926 6.60069 6.62868 6.69401 6.76083 6.91904 6.98092 7.58108 7.67243 7.84923 7.96241 8.28676 8.62403 9.24751 9.85580 10.51012 11.44245 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.002920 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.444577 B = 9587.254144 C =10670.678584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.098 0.902 4 C 0.054 3.946 5 O -0.302 6.302 6 C 0.126 3.874 7 C -0.145 4.145 8 C -0.049 4.049 9 C -0.153 4.153 10 C 0.560 3.440 11 O -0.540 6.540 12 N -0.704 5.704 13 C 0.124 3.876 14 H 0.090 0.910 15 C 0.175 3.825 16 N -0.602 5.602 17 C -0.231 4.231 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.143 3.857 26 C -0.090 4.090 27 C -0.126 4.126 28 C -0.130 4.130 29 C -0.008 4.008 30 C -0.181 4.181 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.394 0.606 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.253 0.747 42 H 0.041 0.959 43 H 0.014 0.986 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.049 0.951 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.923 3.694 19.021 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 H 0.116 0.884 4 C -0.021 4.021 5 O -0.215 6.215 6 C 0.080 3.920 7 C -0.164 4.164 8 C -0.068 4.068 9 C -0.156 4.156 10 C 0.347 3.653 11 O -0.419 6.419 12 N -0.354 5.354 13 C 0.019 3.981 14 H 0.108 0.892 15 C 0.049 3.951 16 N -0.328 5.328 17 C -0.359 4.359 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.017 3.983 26 C -0.092 4.092 27 C -0.183 4.183 28 C -0.188 4.188 29 C -0.027 4.027 30 C -0.182 4.182 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.230 0.770 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.399 4.293 18.749 20.988 hybrid contribution -0.643 -0.897 -0.387 1.169 sum 7.756 3.396 18.362 20.220 Atomic orbital electron populations 1.21779 0.92741 1.02700 1.02700 1.21375 0.97331 0.99966 0.91121 0.88352 1.23940 1.01537 0.80281 0.96383 1.86795 1.86169 1.29973 1.18567 1.19804 0.93680 0.94608 0.83919 1.20134 1.04038 1.00161 0.92032 1.21049 0.95999 0.95357 0.94357 1.19903 1.05954 0.95771 0.94004 1.17961 0.77845 0.84323 0.85188 1.90767 1.49084 1.23895 1.78142 1.45899 1.62014 1.18594 1.08925 1.22509 0.97452 0.99326 0.78786 0.89169 1.21531 0.91387 0.86976 0.95173 1.44425 1.11090 1.18598 1.58731 1.18965 0.94301 0.99619 1.23005 0.90561 1.24805 0.97569 0.97189 1.00744 1.69950 1.19281 1.18612 1.48650 0.86227 0.80246 0.79181 0.80235 1.21272 1.21653 1.21225 1.21627 0.86967 0.92791 0.96908 1.22024 0.93865 0.97616 0.95657 1.21598 1.01175 0.99041 0.96521 1.21673 0.97576 1.01192 0.98370 1.20340 0.93264 0.99099 0.90028 1.20635 1.05486 0.96958 0.95144 0.92058 0.91823 0.91479 0.90380 0.87437 0.84852 0.84695 0.77001 0.93357 0.92781 0.93661 0.94097 0.96807 0.93335 0.92898 0.91174 0.93177 0.92647 0.92824 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.24 37.16 0.34 -0.81 16 2 C -0.08 -0.68 3.73 -90.40 -0.34 -1.02 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.40 7.54 38.05 0.29 0.69 16 5 O -0.30 -3.33 11.10 -19.74 -0.22 -3.55 16 6 C 0.13 1.50 7.04 -38.73 -0.27 1.23 16 7 C -0.15 -1.65 10.05 -39.36 -0.40 -2.05 16 8 C -0.05 -0.59 9.52 -39.30 -0.37 -0.97 16 9 C -0.15 -2.24 5.88 -104.92 -0.62 -2.86 16 10 C 0.56 9.98 7.77 -12.44 -0.10 9.89 16 11 O -0.54 -11.54 16.00 5.30 0.08 -11.46 16 12 N -0.70 -11.89 4.40 -53.05 -0.23 -12.12 16 13 C 0.12 2.37 2.59 -66.10 -0.17 2.20 16 14 H 0.09 1.80 7.45 -51.93 -0.39 1.41 16 15 C 0.17 4.30 4.79 -3.06 -0.01 4.29 16 16 N -0.60 -14.96 3.38 -170.07 -0.57 -15.53 16 17 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -27.43 10.31 55.49 0.57 -26.86 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.14 2.81 6.12 -2.53 -0.02 2.80 16 26 C -0.09 -1.48 0.83 -152.36 -0.13 -1.61 16 27 C -0.13 -2.00 8.57 37.16 0.32 -1.68 16 28 C -0.13 -1.67 8.22 37.16 0.31 -1.37 16 29 C -0.01 -0.11 9.58 -39.33 -0.38 -0.49 16 30 C -0.18 -2.14 5.61 -104.13 -0.58 -2.72 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.11 0.57 7.92 -51.93 -0.41 0.16 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.14 1.38 6.40 -52.48 -0.34 1.04 16 38 H 0.39 5.74 5.15 -40.82 -0.21 5.53 16 39 H 0.05 1.37 7.41 -51.93 -0.38 0.99 16 40 H 0.05 1.50 7.38 -51.93 -0.38 1.12 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.04 0.79 8.05 -51.92 -0.42 0.37 16 43 H 0.01 0.27 7.98 -51.93 -0.41 -0.15 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 47 H 0.05 0.59 6.48 -51.93 -0.34 0.25 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.14 1.90 7.66 -52.49 -0.40 1.50 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -33.39 396.20 -9.67 -43.06 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.87 Total: 4.50 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.38 Total: -1.28 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.24 Total: -54.51 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.13 Total: -15.01 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.39 -9.67 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974938499.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.087 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds