Wall clock time and date at job start Wed Apr 1 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.86816 * 2 1 4 4 C 1.54699 * 110.94755 * 123.75817 * 2 1 3 5 5 O 1.43740 * 102.83220 * 92.72578 * 4 2 1 6 6 C 1.35994 * 109.33996 * 27.65074 * 5 4 2 7 7 C 1.39591 * 129.70909 * 161.38375 * 6 5 4 8 8 C 1.37465 * 120.43357 * 179.57033 * 7 6 5 9 9 C 1.39757 * 120.20183 * 0.04972 * 8 7 6 10 10 C 1.47604 * 120.26711 * 180.17963 * 9 8 7 11 11 O 1.21590 * 119.99746 * 179.97438 * 10 9 8 12 12 N 1.34767 * 120.00006 * 359.97438 * 10 9 8 13 13 C 1.46508 * 119.99898 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.88515 * 325.69980 * 13 12 10 15 15 C 1.54908 * 111.00360 * 89.58477 * 13 12 10 16 16 N 1.47523 * 104.78574 * 81.08884 * 15 13 12 17 17 C 1.36934 * 125.63718 * 204.08847 * 16 15 13 18 18 H 1.07997 * 120.00309 * 169.99564 * 17 16 15 19 19 C 1.38818 * 119.99854 * 349.98510 * 17 16 15 20 20 N 1.31614 * 120.00124 * 350.42436 * 19 17 16 21 21 Si 1.86797 * 119.99804 * 170.41572 * 19 17 16 22 22 H 1.48503 * 109.47076 * 94.14343 * 21 19 17 23 23 H 1.48499 * 109.47057 * 214.14766 * 21 19 17 24 24 H 1.48498 * 109.47313 * 334.14729 * 21 19 17 25 25 C 1.47024 * 108.71693 * 24.11684 * 16 15 13 26 26 C 1.54332 * 107.26857 * 358.94289 * 25 16 15 27 27 C 1.53000 * 110.71884 * 219.44172 * 26 25 16 28 28 C 1.52998 * 110.71761 * 96.17071 * 26 25 16 29 29 C 1.39816 * 119.46704 * 0.15070 * 9 8 7 30 30 C 1.37301 * 119.85453 * 359.97438 * 29 9 8 31 31 H 1.08991 * 109.46907 * 297.70126 * 1 2 3 32 32 H 1.09002 * 109.47222 * 57.69696 * 1 2 3 33 33 H 1.08998 * 109.47248 * 177.69728 * 1 2 3 34 34 H 1.09006 * 110.74269 * 211.06255 * 4 2 1 35 35 H 1.09002 * 110.73987 * 334.20509 * 4 2 1 36 36 H 1.07997 * 119.78354 * 359.54915 * 7 6 5 37 37 H 1.08001 * 119.90249 * 180.02562 * 8 7 6 38 38 H 0.96998 * 120.00017 * 0.02562 * 12 10 9 39 39 H 1.08999 * 110.36306 * 199.90467 * 15 13 12 40 40 H 1.09003 * 110.36359 * 322.22241 * 15 13 12 41 41 H 0.96994 * 120.00073 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.88586 * 239.53110 * 25 16 15 43 43 H 1.08994 * 109.88322 * 118.36147 * 25 16 15 44 44 H 1.09002 * 109.46713 * 173.52374 * 27 26 25 45 45 H 1.09000 * 109.46969 * 293.52434 * 27 26 25 46 46 H 1.08996 * 109.46985 * 53.52600 * 27 26 25 47 47 H 1.09005 * 109.47323 * 306.47836 * 28 26 25 48 48 H 1.09004 * 109.47135 * 66.47781 * 28 26 25 49 49 H 1.09002 * 109.47327 * 186.47563 * 28 26 25 50 50 H 1.08002 * 120.07235 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0831 -0.8028 1.2011 5 8 2.2594 -2.1191 0.6513 6 6 2.4852 -2.0220 -0.6863 7 6 3.0435 -2.9507 -1.5663 8 6 3.1760 -2.6523 -2.9016 9 6 2.7529 -1.4133 -3.3905 10 6 2.8909 -1.0930 -4.8247 11 8 2.5207 -0.0137 -5.2449 12 7 3.4271 -1.9967 -5.6685 13 6 3.5646 -1.6785 -7.0920 14 1 2.7382 -1.0544 -7.4322 15 6 4.9275 -1.0010 -7.3804 16 7 5.8915 -2.1146 -7.4628 17 6 7.2396 -2.0208 -7.2417 18 1 7.8382 -2.9166 -7.1670 19 6 7.8370 -0.7742 -7.1140 20 7 7.1520 0.3151 -7.3903 21 14 9.6128 -0.6430 -6.5497 22 1 10.5051 -0.5759 -7.7348 23 1 9.7828 0.5848 -5.7318 24 1 9.9623 -1.8335 -5.7338 25 6 5.1655 -3.3415 -7.8222 26 6 3.6721 -2.9714 -7.9429 27 6 2.7913 -4.0782 -7.3597 28 6 3.2997 -2.6927 -9.4005 29 6 2.1973 -0.4799 -2.5102 30 6 2.0719 -0.7872 -1.1779 31 1 -0.3633 0.4777 0.9098 32 1 -0.3634 0.5492 -0.8686 33 1 -0.3634 -1.0268 -0.0413 34 1 3.0366 -0.3924 1.5336 35 1 1.3639 -0.8167 2.0202 36 1 3.3737 -3.9097 -1.1955 37 1 3.6088 -3.3774 -3.5749 38 1 3.7221 -2.8578 -5.3333 39 1 4.8899 -0.4609 -8.3264 40 1 5.1950 -0.3259 -6.5675 41 1 7.5693 1.1861 -7.3007 42 1 5.2994 -4.0930 -7.0440 43 1 5.5312 -3.7229 -8.7755 44 1 1.7524 -3.7485 -7.3500 45 1 2.8821 -4.9754 -7.9721 46 1 3.1119 -4.2991 -6.3417 47 1 3.9763 -1.9434 -9.8115 48 1 3.3820 -3.6129 -9.9789 49 1 2.2754 -2.3232 -9.4495 50 1 1.8675 0.4807 -2.8775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974938502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:13 Heat of formation + Delta-G solvation = -17.810845 kcal Electronic energy + Delta-G solvation = -30923.368474 eV Core-core repulsion = 26916.486747 eV Total energy + Delta-G solvation = -4006.881727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.45234 -39.81412 -38.20334 -36.81613 -34.26949 -33.79385 -33.04929 -30.73591 -30.50565 -30.04743 -28.02554 -27.02148 -26.75655 -25.61386 -24.12489 -23.02784 -22.82498 -21.20848 -20.54386 -19.77463 -18.77484 -17.49903 -17.36291 -16.68194 -16.64281 -16.24129 -15.58871 -14.91808 -14.69790 -14.32790 -14.12957 -13.94676 -13.84648 -13.70106 -13.62148 -13.31305 -13.16852 -13.08481 -12.77395 -12.68123 -12.47056 -12.10569 -11.96934 -11.91248 -11.72522 -11.36283 -11.33652 -11.26650 -11.00996 -10.87480 -10.77701 -10.74632 -10.39690 -10.19098 -9.98427 -9.88848 -9.69264 -9.51171 -9.07100 -8.57008 -8.48492 -8.21105 -6.76132 -5.70864 -3.04147 0.85528 1.21855 2.91270 3.12329 3.40806 3.46463 3.48653 3.55485 3.92813 4.07064 4.31154 4.51215 4.63004 4.67197 4.90324 4.95237 5.03397 5.08956 5.10592 5.21495 5.24862 5.27924 5.29931 5.41314 5.44903 5.52773 5.64054 5.65308 5.79534 5.86823 5.87466 5.89382 6.01918 6.06038 6.12366 6.18812 6.20765 6.25660 6.29506 6.35998 6.42474 6.52135 6.61047 6.71752 6.74935 6.95463 7.00454 7.54980 7.58921 7.82302 7.99654 8.29315 8.67153 9.21272 9.84135 10.51113 11.41345 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003293 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.951601 B = 8501.500854 C = 9812.544005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.099 0.901 4 C 0.053 3.947 5 O -0.302 6.302 6 C 0.126 3.874 7 C -0.145 4.145 8 C -0.048 4.048 9 C -0.152 4.152 10 C 0.560 3.440 11 O -0.543 6.543 12 N -0.697 5.697 13 C 0.123 3.877 14 H 0.089 0.911 15 C 0.169 3.831 16 N -0.600 5.600 17 C -0.231 4.231 18 H 0.075 0.925 19 C -0.004 4.004 20 N -0.913 5.913 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.142 3.858 26 C -0.086 4.086 27 C -0.131 4.131 28 C -0.129 4.129 29 C -0.008 4.008 30 C -0.182 4.182 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.395 0.605 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.253 0.747 42 H 0.021 0.979 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.054 0.946 49 H 0.050 0.950 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.310 -5.790 12.803 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.117 0.883 4 C -0.021 4.021 5 O -0.216 6.216 6 C 0.080 3.920 7 C -0.164 4.164 8 C -0.066 4.066 9 C -0.156 4.156 10 C 0.347 3.653 11 O -0.422 6.422 12 N -0.348 5.348 13 C 0.018 3.982 14 H 0.107 0.893 15 C 0.043 3.957 16 N -0.326 5.326 17 C -0.360 4.360 18 H 0.092 0.908 19 C -0.201 4.201 20 N -0.560 5.560 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.016 3.984 26 C -0.087 4.087 27 C -0.188 4.188 28 C -0.186 4.186 29 C -0.027 4.027 30 C -0.183 4.183 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.231 0.769 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.415 -5.049 12.658 19.837 hybrid contribution 1.299 -0.121 0.413 1.369 sum -13.116 -5.171 13.071 19.225 Atomic orbital electron populations 1.21762 0.92852 1.02630 1.02466 1.21375 0.97178 1.00122 0.91197 0.88287 1.23946 1.01644 0.80227 0.96326 1.86769 1.86376 1.30019 1.18410 1.19803 0.93762 0.94602 0.83851 1.20130 1.04013 1.00250 0.91985 1.21054 0.95523 0.95593 0.94463 1.19897 1.05967 0.95560 0.94150 1.17943 0.77848 0.84270 0.85228 1.90761 1.50502 1.22922 1.78006 1.45729 1.61793 1.18420 1.08813 1.22571 1.01071 0.96018 0.78578 0.89310 1.21789 0.83408 0.90001 1.00499 1.44460 1.03502 1.03306 1.81332 1.18957 0.82105 0.92402 1.42515 0.90752 1.24808 0.97961 0.95567 1.01801 1.69944 1.35874 0.97078 1.53073 0.86185 0.84641 0.77118 0.78275 1.21657 1.21688 1.20672 1.21420 0.88930 0.90783 0.97231 1.21833 0.96438 0.94824 0.95653 1.21719 0.99112 0.97847 1.00168 1.21692 1.00948 1.01770 0.94228 1.20330 0.93373 0.98955 0.90057 1.20617 1.05794 0.96739 0.95131 0.91849 0.91619 0.92166 0.90291 0.87486 0.84875 0.84678 0.76868 0.94675 0.90753 0.93684 0.96128 0.95760 0.92758 0.92634 0.93062 0.91594 0.92681 0.93058 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.25 37.16 0.34 -0.73 16 2 C -0.08 -0.72 3.73 -90.39 -0.34 -1.06 16 3 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 4 C 0.05 0.43 7.54 38.05 0.29 0.72 16 5 O -0.30 -3.47 11.09 -19.72 -0.22 -3.68 16 6 C 0.13 1.57 7.05 -38.72 -0.27 1.29 16 7 C -0.15 -1.74 10.05 -39.36 -0.40 -2.13 16 8 C -0.05 -0.61 9.52 -39.30 -0.37 -0.98 16 9 C -0.15 -2.33 5.88 -104.92 -0.62 -2.94 16 10 C 0.56 10.26 7.77 -12.44 -0.10 10.16 16 11 O -0.54 -11.77 16.05 5.29 0.08 -11.68 16 12 N -0.70 -12.11 4.57 -52.74 -0.24 -12.35 16 13 C 0.12 2.34 2.61 -65.78 -0.17 2.17 16 14 H 0.09 1.73 7.53 -51.93 -0.39 1.34 16 15 C 0.17 4.12 4.81 -2.48 -0.01 4.11 16 16 N -0.60 -14.88 3.40 -169.99 -0.58 -15.46 16 17 C -0.23 -6.39 10.24 -15.06 -0.15 -6.54 16 18 H 0.07 1.99 7.85 -52.49 -0.41 1.58 16 19 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 20 N -0.91 -27.25 10.68 55.49 0.59 -26.65 16 21 Si 0.91 22.29 29.56 -169.99 -5.03 17.26 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.14 2.82 6.41 -3.06 -0.02 2.80 16 26 C -0.09 -1.41 0.80 -152.67 -0.12 -1.53 16 27 C -0.13 -1.68 8.07 37.16 0.30 -1.38 16 28 C -0.13 -1.94 8.40 37.16 0.31 -1.63 16 29 C -0.01 -0.12 9.58 -39.33 -0.38 -0.49 16 30 C -0.18 -2.23 5.61 -104.13 -0.58 -2.81 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.60 7.93 -51.93 -0.41 0.19 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.14 1.49 6.40 -52.49 -0.34 1.16 16 38 H 0.40 6.05 5.06 -40.82 -0.21 5.84 16 39 H 0.04 0.94 7.73 -51.93 -0.40 0.54 16 40 H 0.07 2.12 6.94 -51.93 -0.36 1.76 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.02 0.39 7.76 -51.93 -0.40 -0.01 16 43 H 0.02 0.49 7.84 -51.93 -0.41 0.09 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.62 6.42 -51.93 -0.33 0.29 16 47 H 0.07 1.14 7.58 -51.93 -0.39 0.75 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.14 1.96 7.66 -52.49 -0.40 1.56 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -33.34 395.74 -9.63 -42.97 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.82 Total: 4.83 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.39 Total: -1.20 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.23 Total: -54.46 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.13 Total: -15.37 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.34 -9.63 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974938502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.161 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds