Wall clock time and date at job start Wed Apr 1 2020 03:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.86816 * 2 1 4 4 C 1.54699 * 110.94755 * 123.75817 * 2 1 3 5 5 O 1.43740 * 102.83220 * 92.72578 * 4 2 1 6 6 C 1.35994 * 109.33996 * 27.65074 * 5 4 2 7 7 C 1.39591 * 129.70909 * 161.38375 * 6 5 4 8 8 C 1.37465 * 120.43357 * 179.57033 * 7 6 5 9 9 C 1.39757 * 120.20183 * 0.04972 * 8 7 6 10 10 C 1.47604 * 120.26711 * 180.17963 * 9 8 7 11 11 O 1.21590 * 119.99746 * 179.97438 * 10 9 8 12 12 N 1.34767 * 120.00006 * 359.97438 * 10 9 8 13 13 C 1.46508 * 119.99898 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.88515 * 325.69980 * 13 12 10 15 15 C 1.54908 * 111.00360 * 89.58477 * 13 12 10 16 16 N 1.47523 * 104.78574 * 81.08884 * 15 13 12 17 17 C 1.36934 * 125.63718 * 204.08847 * 16 15 13 18 18 H 1.07997 * 120.00309 * 169.99564 * 17 16 15 19 19 C 1.38818 * 119.99854 * 349.98510 * 17 16 15 20 20 N 1.31614 * 120.00124 * 350.42436 * 19 17 16 21 21 Si 1.86797 * 119.99804 * 170.41572 * 19 17 16 22 22 H 1.48503 * 109.47076 * 94.14343 * 21 19 17 23 23 H 1.48499 * 109.47057 * 214.14766 * 21 19 17 24 24 H 1.48498 * 109.47313 * 334.14729 * 21 19 17 25 25 C 1.47024 * 108.71693 * 24.11684 * 16 15 13 26 26 C 1.54332 * 107.26857 * 358.94289 * 25 16 15 27 27 C 1.53000 * 110.71884 * 219.44172 * 26 25 16 28 28 C 1.52998 * 110.71761 * 96.17071 * 26 25 16 29 29 C 1.39816 * 119.46704 * 0.15070 * 9 8 7 30 30 C 1.37301 * 119.85453 * 359.97438 * 29 9 8 31 31 H 1.08991 * 109.46907 * 297.70126 * 1 2 3 32 32 H 1.09002 * 109.47222 * 57.69696 * 1 2 3 33 33 H 1.08998 * 109.47248 * 177.69728 * 1 2 3 34 34 H 1.09006 * 110.74269 * 211.06255 * 4 2 1 35 35 H 1.09002 * 110.73987 * 334.20509 * 4 2 1 36 36 H 1.07997 * 119.78354 * 359.54915 * 7 6 5 37 37 H 1.08001 * 119.90249 * 180.02562 * 8 7 6 38 38 H 0.96998 * 120.00017 * 0.02562 * 12 10 9 39 39 H 1.08999 * 110.36306 * 199.90467 * 15 13 12 40 40 H 1.09003 * 110.36359 * 322.22241 * 15 13 12 41 41 H 0.96994 * 120.00073 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.88586 * 239.53110 * 25 16 15 43 43 H 1.08994 * 109.88322 * 118.36147 * 25 16 15 44 44 H 1.09002 * 109.46713 * 173.52374 * 27 26 25 45 45 H 1.09000 * 109.46969 * 293.52434 * 27 26 25 46 46 H 1.08996 * 109.46985 * 53.52600 * 27 26 25 47 47 H 1.09005 * 109.47323 * 306.47836 * 28 26 25 48 48 H 1.09004 * 109.47135 * 66.47781 * 28 26 25 49 49 H 1.09002 * 109.47327 * 186.47563 * 28 26 25 50 50 H 1.08002 * 120.07235 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0831 -0.8028 1.2011 5 8 2.2594 -2.1191 0.6513 6 6 2.4852 -2.0220 -0.6863 7 6 3.0435 -2.9507 -1.5663 8 6 3.1760 -2.6523 -2.9016 9 6 2.7529 -1.4133 -3.3905 10 6 2.8909 -1.0930 -4.8247 11 8 2.5207 -0.0137 -5.2449 12 7 3.4271 -1.9967 -5.6685 13 6 3.5646 -1.6785 -7.0920 14 1 2.7382 -1.0544 -7.4322 15 6 4.9275 -1.0010 -7.3804 16 7 5.8915 -2.1146 -7.4628 17 6 7.2396 -2.0208 -7.2417 18 1 7.8382 -2.9166 -7.1670 19 6 7.8370 -0.7742 -7.1140 20 7 7.1520 0.3151 -7.3903 21 14 9.6128 -0.6430 -6.5497 22 1 10.5051 -0.5759 -7.7348 23 1 9.7828 0.5848 -5.7318 24 1 9.9623 -1.8335 -5.7338 25 6 5.1655 -3.3415 -7.8222 26 6 3.6721 -2.9714 -7.9429 27 6 2.7913 -4.0782 -7.3597 28 6 3.2997 -2.6927 -9.4005 29 6 2.1973 -0.4799 -2.5102 30 6 2.0719 -0.7872 -1.1779 31 1 -0.3633 0.4777 0.9098 32 1 -0.3634 0.5492 -0.8686 33 1 -0.3634 -1.0268 -0.0413 34 1 3.0366 -0.3924 1.5336 35 1 1.3639 -0.8167 2.0202 36 1 3.3737 -3.9097 -1.1955 37 1 3.6088 -3.3774 -3.5749 38 1 3.7221 -2.8578 -5.3333 39 1 4.8899 -0.4609 -8.3264 40 1 5.1950 -0.3259 -6.5675 41 1 7.5693 1.1861 -7.3007 42 1 5.2994 -4.0930 -7.0440 43 1 5.5312 -3.7229 -8.7755 44 1 1.7524 -3.7485 -7.3500 45 1 2.8821 -4.9754 -7.9721 46 1 3.1119 -4.2991 -6.3417 47 1 3.9763 -1.9434 -9.8115 48 1 3.3820 -3.6129 -9.9789 49 1 2.2754 -2.3232 -9.4495 50 1 1.8675 0.4807 -2.8775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974938502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:12 Heat of formation + Delta-G solvation = -38.440635 kcal Electronic energy + Delta-G solvation = -30924.263049 eV Core-core repulsion = 26916.486747 eV Total energy + Delta-G solvation = -4007.776302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.35079 -41.26049 -39.63033 -37.97949 -35.68375 -35.05368 -34.50518 -32.63701 -31.58543 -31.06566 -29.61050 -28.03160 -27.64973 -27.41468 -25.55429 -24.31791 -23.91113 -22.33068 -21.98938 -21.23279 -20.17297 -18.69610 -18.66787 -18.26276 -17.78401 -17.19564 -16.81154 -16.71239 -16.09126 -15.84302 -15.57504 -15.25216 -15.13066 -14.80860 -14.67635 -14.54015 -14.20520 -14.14986 -13.94613 -13.70738 -13.64428 -13.52405 -13.33346 -13.18284 -12.99582 -12.79271 -12.75186 -12.63124 -12.58795 -12.10158 -12.02457 -11.86049 -11.80867 -11.77346 -11.62910 -11.54254 -11.35265 -11.01927 -10.68563 -10.06073 -10.02289 -9.25358 -8.82155 -7.86359 -5.21203 -0.23044 0.23294 1.43264 1.45059 1.54264 1.76657 2.13209 2.26477 2.48744 2.75743 3.29652 3.33285 3.53638 3.54800 3.66759 3.72684 3.81834 3.96763 4.01361 4.06230 4.10493 4.14321 4.40196 4.41290 4.48388 4.49847 4.59448 4.66037 4.71219 4.78901 4.85150 4.89249 4.94028 4.97345 5.00986 5.04215 5.06096 5.12098 5.19520 5.23275 5.25515 5.27128 5.30414 5.35083 5.40136 5.48269 5.54647 5.69887 5.70486 6.05393 6.19940 6.58810 7.06869 7.25217 7.77604 8.44150 9.24639 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003293 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.951601 B = 8501.500854 C = 9812.544005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.108 0.892 4 C 0.050 3.950 5 O -0.309 6.309 6 C 0.125 3.875 7 C -0.145 4.145 8 C -0.042 4.042 9 C -0.177 4.177 10 C 0.556 3.444 11 O -0.588 6.588 12 N -0.688 5.688 13 C 0.136 3.864 14 H 0.082 0.918 15 C 0.182 3.818 16 N -0.616 5.616 17 C -0.237 4.237 18 H 0.084 0.916 19 C -0.066 4.066 20 N -0.949 5.949 21 Si 0.973 3.027 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.264 1.264 25 C 0.137 3.863 26 C -0.072 4.072 27 C -0.125 4.125 28 C -0.127 4.127 29 C -0.021 4.021 30 C -0.186 4.186 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.408 0.592 39 H -0.003 1.003 40 H 0.024 0.976 41 H 0.244 0.756 42 H 0.040 0.960 43 H 0.025 0.975 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.032 0.968 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.117 -8.765 14.978 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 H 0.127 0.873 4 C -0.024 4.024 5 O -0.223 6.223 6 C 0.079 3.921 7 C -0.163 4.163 8 C -0.061 4.061 9 C -0.180 4.180 10 C 0.345 3.655 11 O -0.470 6.470 12 N -0.339 5.339 13 C 0.029 3.971 14 H 0.100 0.900 15 C 0.055 3.945 16 N -0.342 5.342 17 C -0.366 4.366 18 H 0.102 0.898 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.801 3.199 22 H -0.213 1.213 23 H -0.227 1.227 24 H -0.188 1.188 25 C 0.012 3.988 26 C -0.073 4.073 27 C -0.182 4.182 28 C -0.185 4.185 29 C -0.041 4.041 30 C -0.187 4.187 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.156 0.844 36 H 0.177 0.823 37 H 0.171 0.829 38 H 0.246 0.754 39 H 0.015 0.985 40 H 0.042 0.958 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.051 0.949 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.228 -8.099 14.847 22.758 hybrid contribution 1.530 0.804 -0.202 1.740 sum -13.698 -7.295 14.645 21.339 Atomic orbital electron populations 1.21750 0.91819 1.02296 1.03484 1.21522 0.98022 1.00394 0.90055 0.87350 1.24259 1.03146 0.78532 0.96415 1.86764 1.86001 1.31922 1.17609 1.20050 0.92987 0.94503 0.84583 1.20414 1.03300 1.01210 0.91413 1.21199 0.94881 0.94717 0.95309 1.19730 1.08640 0.97382 0.92290 1.18505 0.76811 0.83537 0.86606 1.90726 1.52507 1.24751 1.79038 1.45591 1.61477 1.18817 1.07997 1.22228 0.97267 0.97291 0.80276 0.90006 1.21401 0.86594 0.89729 0.96735 1.44691 1.03141 1.05036 1.81367 1.19399 0.83616 0.92610 1.40944 0.89789 1.25650 1.02055 0.95408 1.02825 1.70188 1.37453 0.97185 1.54970 0.85149 0.79960 0.77017 0.77736 1.21339 1.22728 1.18847 1.21677 0.90528 0.89036 0.97542 1.21821 0.95083 0.94330 0.96066 1.21702 0.98672 0.96989 1.00863 1.21700 1.01154 1.02153 0.93469 1.20312 0.94120 0.98516 0.91110 1.20906 1.05219 0.97609 0.94996 0.89212 0.92442 0.92956 0.89176 0.84442 0.82273 0.82895 0.75415 0.98502 0.95786 0.94721 0.94172 0.95726 0.91570 0.90184 0.92087 0.94915 0.90058 0.91213 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.25 71.98 0.67 -1.17 16 2 C -0.08 -1.32 3.73 -10.65 -0.04 -1.36 16 3 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.05 0.67 7.54 72.56 0.55 1.22 16 5 O -0.31 -6.26 11.09 -93.49 -1.04 -7.30 16 6 C 0.13 2.88 7.05 22.82 0.16 3.04 16 7 C -0.15 -3.15 10.05 22.41 0.23 -2.92 16 8 C -0.04 -1.03 9.52 22.45 0.21 -0.82 16 9 C -0.18 -5.49 5.88 -20.06 -0.12 -5.61 16 10 C 0.56 21.19 7.77 86.72 0.67 21.86 16 11 O -0.59 -27.20 16.05 -4.00 -0.06 -27.27 16 12 N -0.69 -24.10 4.57 -439.04 -2.01 -26.11 16 13 C 0.14 5.30 2.61 46.38 0.12 5.42 16 14 H 0.08 3.33 7.53 -2.39 -0.02 3.31 16 15 C 0.18 9.44 4.81 86.84 0.42 9.85 16 16 N -0.62 -31.27 3.40 -691.72 -2.35 -33.61 16 17 C -0.24 -13.24 10.24 84.04 0.86 -12.38 16 18 H 0.08 4.44 7.85 -2.91 -0.02 4.42 16 19 C -0.07 -3.86 5.40 84.86 0.46 -3.40 16 20 N -0.95 -59.86 10.68 21.65 0.23 -59.63 16 21 Si 0.97 46.86 29.56 68.60 2.03 48.89 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.14 5.25 6.41 86.73 0.56 5.81 16 26 C -0.07 -2.25 0.80 -50.99 -0.04 -2.29 16 27 C -0.12 -2.75 8.07 71.98 0.58 -2.17 16 28 C -0.13 -3.69 8.40 71.98 0.61 -3.08 16 29 C -0.02 -0.63 9.58 22.43 0.21 -0.41 16 30 C -0.19 -4.43 5.61 -19.54 -0.11 -4.54 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.14 0.99 7.93 -2.39 -0.02 0.97 16 36 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.15 3.04 6.40 -2.91 -0.02 3.02 16 38 H 0.41 11.98 5.06 -92.71 -0.47 11.51 16 39 H 0.00 -0.17 7.73 -2.39 -0.02 -0.19 16 40 H 0.02 1.46 6.94 -2.39 -0.02 1.45 16 41 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.04 1.41 7.76 -2.39 -0.02 1.39 16 43 H 0.02 0.96 7.84 -2.39 -0.02 0.94 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 46 H 0.06 1.24 6.42 -2.39 -0.02 1.22 16 47 H 0.03 1.15 7.58 -2.38 -0.02 1.13 16 48 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.12 3.85 7.66 -2.91 -0.02 3.82 16 Total: -1.00 -78.10 395.74 3.27 -74.83 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.48 Total: 23.15 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 5.99 Total: 7.05 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -4.13 Total: -119.35 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.10 Total: -34.56 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -78.10 3.27 -74.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974938502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.389 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds