Wall clock time and date at job start Wed Apr 1 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.86684 * 2 1 4 4 C 1.54705 * 110.94428 * 123.74758 * 2 1 3 5 5 O 1.43745 * 102.82035 * 143.58061 * 4 2 1 6 6 C 1.35987 * 109.33938 * 332.33338 * 5 4 2 7 7 C 1.39596 * 129.70460 * 198.61972 * 6 5 4 8 8 C 1.37472 * 120.43129 * 180.47130 * 7 6 5 9 9 C 1.39756 * 120.20247 * 359.95528 * 8 7 6 10 10 C 1.47590 * 120.27206 * 179.81404 * 9 8 7 11 11 O 1.21585 * 120.00776 * 134.25439 * 10 9 8 12 12 N 1.34781 * 119.99663 * 314.26246 * 10 9 8 13 13 C 1.46922 * 120.63202 * 3.93040 * 12 10 9 14 14 C 1.52760 * 109.01126 * 233.58616 * 13 12 10 15 15 C 1.53039 * 109.38539 * 305.59126 * 14 13 12 16 16 N 1.46494 * 109.44932 * 181.25177 * 15 14 13 17 17 C 1.46506 * 120.00212 * 299.93802 * 16 15 14 18 18 C 1.36937 * 120.00252 * 119.93790 * 16 15 14 19 19 H 1.07998 * 119.99698 * 24.31542 * 18 16 15 20 20 C 1.38811 * 120.00000 * 204.31653 * 18 16 15 21 21 N 1.31616 * 120.00229 * 14.79980 * 20 18 16 22 22 Si 1.86803 * 119.99605 * 194.79695 * 20 18 16 23 23 H 1.48499 * 109.47305 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47024 * 120.00440 * 22 20 18 25 25 H 1.48506 * 109.47082 * 239.99863 * 22 20 18 26 26 C 1.53043 * 109.53866 * 61.23654 * 15 14 13 27 27 C 1.46932 * 120.62672 * 184.21919 * 12 10 9 28 28 C 1.39816 * 119.46154 * 359.83732 * 9 8 7 29 29 C 1.37307 * 119.86643 * 359.97438 * 28 9 8 30 30 H 1.08995 * 109.47642 * 297.70806 * 1 2 3 31 31 H 1.09003 * 109.46835 * 57.70463 * 1 2 3 32 32 H 1.08998 * 109.47085 * 177.70222 * 1 2 3 33 33 H 1.08998 * 110.74431 * 25.24491 * 4 2 1 34 34 H 1.09006 * 110.74268 * 261.90977 * 4 2 1 35 35 H 1.08002 * 119.78666 * 0.44699 * 7 6 5 36 36 H 1.07995 * 119.90232 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.59042 * 353.42677 * 13 12 10 38 38 H 1.08998 * 109.58584 * 113.84770 * 13 12 10 39 39 H 1.08997 * 109.56911 * 185.55269 * 14 13 12 40 40 H 1.09001 * 109.35922 * 65.50345 * 14 13 12 41 41 H 1.08992 * 109.45752 * 301.21968 * 15 14 13 42 42 H 1.09001 * 109.47216 * 92.71703 * 17 16 15 43 43 H 1.09003 * 109.47197 * 212.71876 * 17 16 15 44 44 H 1.09001 * 109.46950 * 332.71478 * 17 16 15 45 45 H 0.97003 * 119.99980 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.49795 * 178.68348 * 26 15 14 47 47 H 1.09002 * 109.49482 * 58.58716 * 26 15 14 48 48 H 1.09001 * 109.58197 * 246.14519 * 27 12 10 49 49 H 1.08995 * 109.59192 * 6.43399 * 27 12 10 50 50 H 1.08009 * 120.06814 * 179.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0830 -0.8027 1.2014 5 8 3.2504 -1.4361 0.6516 6 6 3.0791 -1.6127 -0.6859 7 6 3.7484 -2.4652 -1.5657 8 6 3.4229 -2.4825 -2.9013 9 6 2.4164 -1.6454 -3.3905 10 6 2.0686 -1.6598 -4.8248 11 8 0.9024 -1.6911 -5.1674 12 7 3.0438 -1.6383 -5.7549 13 6 4.4576 -1.6873 -5.3584 14 6 5.1941 -0.5103 -5.9954 15 6 4.9644 -0.5261 -7.5084 16 7 5.6945 0.5847 -8.1243 17 6 5.3927 1.9646 -7.7357 18 6 6.6590 0.3331 -9.0632 19 1 6.6298 -0.5824 -9.6353 20 6 7.6740 1.2549 -9.2796 21 7 7.8870 2.2165 -8.4065 22 14 8.7378 1.1305 -10.8101 23 1 8.2974 -0.0294 -11.6261 24 1 8.6045 2.3757 -11.6082 25 1 10.1569 0.9467 -10.4130 26 6 3.4694 -0.3780 -7.8006 27 6 2.7132 -1.5591 -7.1843 28 6 1.7418 -0.7939 -2.5103 29 6 2.0720 -0.7873 -1.1775 30 1 -0.3634 0.4778 0.9097 31 1 -0.3633 0.5491 -0.8687 32 1 -0.3633 -1.0268 -0.0412 33 1 1.3599 -1.5475 1.5337 34 1 2.3550 -0.1353 2.0192 35 1 4.5271 -3.1151 -1.1949 36 1 3.9465 -3.1451 -3.5744 37 1 4.5354 -1.6210 -4.2732 38 1 4.9014 -2.6216 -5.7021 39 1 6.2612 -0.5922 -5.7886 40 1 4.8131 0.4224 -5.5793 41 1 5.3231 -1.4692 -7.9202 42 1 6.0595 2.2690 -6.9289 43 1 5.5353 2.6229 -8.5927 44 1 4.3589 2.0288 -7.3963 45 1 8.5966 2.8604 -8.5576 46 1 3.3089 -0.3658 -8.8787 47 1 3.1046 0.5534 -7.3675 48 1 3.0119 -2.4828 -7.6801 49 1 1.6400 -1.4109 -7.3036 50 1 0.9626 -0.1426 -2.8779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985598010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:04 Heat of formation + Delta-G solvation = -8.807077 kcal Electronic energy + Delta-G solvation = -30609.723223 eV Core-core repulsion = 26603.231929 eV Total energy + Delta-G solvation = -4006.491294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.58131 -40.16428 -37.75902 -37.07568 -35.08369 -34.47389 -32.28394 -31.20709 -30.59793 -30.00317 -29.42712 -26.99102 -25.99598 -25.28685 -23.99901 -23.13070 -22.63788 -21.81701 -21.06982 -19.96637 -18.65064 -17.87867 -17.41516 -16.75371 -16.56957 -16.11534 -16.05695 -15.04263 -14.97841 -14.68959 -14.51664 -14.06364 -13.95800 -13.82237 -13.71654 -13.48757 -13.29915 -13.03121 -12.92976 -12.86877 -12.51423 -12.23821 -12.20236 -12.05784 -11.59631 -11.57151 -11.50493 -11.12411 -10.95696 -10.93930 -10.82040 -10.77744 -10.39746 -10.20324 -10.14165 -9.89214 -9.76700 -9.56288 -9.15654 -8.59497 -8.48675 -8.32293 -6.72794 -5.73258 -3.19392 0.77525 1.06112 2.65349 2.95348 3.06044 3.36891 3.44700 3.46415 3.52071 3.97129 4.17601 4.46014 4.47577 4.49783 4.61621 4.82214 4.90456 4.99440 5.05247 5.15135 5.17902 5.28841 5.30970 5.33421 5.36002 5.44592 5.47765 5.56734 5.65551 5.71113 5.73458 5.78753 5.88963 5.92110 6.04219 6.07613 6.11525 6.18220 6.20763 6.27526 6.42223 6.51103 6.64098 6.80156 6.83963 6.97941 7.01272 7.36145 7.51504 7.71141 7.80599 8.22127 8.40798 9.23348 9.87426 10.37941 11.31696 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.002496 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.899856 B =11213.292158 C =11800.012308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.099 0.901 4 C 0.054 3.946 5 O -0.302 6.302 6 C 0.125 3.875 7 C -0.143 4.143 8 C -0.053 4.053 9 C -0.151 4.151 10 C 0.564 3.436 11 O -0.546 6.546 12 N -0.597 5.597 13 C 0.094 3.906 14 C -0.145 4.145 15 C 0.179 3.821 16 N -0.595 5.595 17 C 0.162 3.838 18 C -0.255 4.255 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C -0.147 4.147 27 C 0.116 3.884 28 C -0.015 4.015 29 C -0.178 4.178 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.026 0.974 43 H 0.040 0.960 44 H -0.001 1.001 45 H 0.251 0.749 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.472 -7.677 18.126 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.117 0.883 4 C -0.021 4.021 5 O -0.215 6.215 6 C 0.079 3.921 7 C -0.162 4.162 8 C -0.072 4.072 9 C -0.154 4.154 10 C 0.352 3.648 11 O -0.425 6.425 12 N -0.329 5.329 13 C -0.029 4.029 14 C -0.186 4.186 15 C 0.071 3.929 16 N -0.316 5.316 17 C 0.018 3.982 18 C -0.385 4.385 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.218 1.218 26 C -0.187 4.187 27 C -0.007 4.007 28 C -0.033 4.033 29 C -0.178 4.178 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.017 0.983 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.104 0.896 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.757 -7.593 18.046 23.367 hybrid contribution 0.754 0.291 -0.764 1.112 sum -12.003 -7.303 17.282 22.273 Atomic orbital electron populations 1.21732 0.92719 1.02764 1.02666 1.21408 0.97512 0.99782 0.91148 0.88271 1.23995 0.85936 0.95769 0.96360 1.86793 1.39372 1.77005 1.18360 1.19793 0.94598 0.93703 0.83975 1.20169 1.03549 1.00606 0.91871 1.21119 0.94322 0.97290 0.94454 1.19711 1.00090 1.01908 0.93721 1.18127 0.85105 0.76347 0.85214 1.90761 1.18736 1.50994 1.82033 1.48079 1.06585 1.71469 1.06776 1.22208 0.79910 1.00007 1.00783 1.22431 1.00410 0.96860 0.98881 1.20295 0.89748 0.92545 0.90321 1.43941 1.41482 1.00243 1.45924 1.20715 0.93098 0.85283 0.99141 1.19231 1.02431 1.05534 1.11268 0.91504 1.25029 0.97126 0.99144 0.98309 1.70080 1.32690 1.18220 1.33882 0.86234 0.80117 0.77439 0.83030 1.20319 1.21674 1.21789 1.22474 0.98141 0.97250 1.00803 1.21678 1.01025 0.99078 0.78882 1.20175 0.96830 0.96101 0.90235 1.20610 1.01371 1.00845 0.95021 0.91798 0.91540 0.91998 0.90244 0.87451 0.84671 0.83976 0.89262 0.91203 0.90452 0.92218 0.91891 0.95542 0.94162 0.98265 0.93850 0.90764 0.92040 0.91556 0.89555 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.16 37.16 0.34 -0.57 16 2 C -0.08 -0.63 3.73 -90.40 -0.34 -0.97 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.05 0.38 7.55 38.05 0.29 0.67 16 5 O -0.30 -3.18 11.09 -19.70 -0.22 -3.39 16 6 C 0.13 1.40 7.05 -38.72 -0.27 1.12 16 7 C -0.14 -1.49 10.05 -39.35 -0.40 -1.89 16 8 C -0.05 -0.58 7.29 -39.29 -0.29 -0.87 16 9 C -0.15 -1.96 5.18 -104.93 -0.54 -2.51 16 10 C 0.56 8.62 7.29 -12.44 -0.09 8.53 16 11 O -0.55 -9.92 16.43 5.29 0.09 -9.84 16 12 N -0.60 -8.70 2.98 -174.24 -0.52 -9.22 16 13 C 0.09 1.26 5.18 -3.94 -0.02 1.24 16 14 C -0.15 -2.50 5.32 -26.83 -0.14 -2.65 16 15 C 0.18 3.47 2.55 -67.89 -0.17 3.30 16 16 N -0.59 -14.44 2.80 -173.44 -0.49 -14.92 16 17 C 0.16 3.96 8.07 59.85 0.48 4.44 16 18 C -0.25 -6.84 9.55 -15.06 -0.14 -6.99 16 19 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 20 C 0.00 0.07 5.04 -17.43 -0.09 -0.02 16 21 N -0.90 -26.10 10.91 55.49 0.61 -25.50 16 22 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C -0.15 -2.50 5.32 -26.61 -0.14 -2.64 16 27 C 0.12 1.71 6.42 -3.71 -0.02 1.69 16 28 C -0.01 -0.18 9.57 -39.33 -0.38 -0.55 16 29 C -0.18 -1.92 5.68 -104.13 -0.59 -2.51 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.14 1.30 6.59 -52.49 -0.35 0.96 16 37 H 0.09 1.07 4.23 -51.93 -0.22 0.86 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 41 H 0.06 1.23 7.87 -51.93 -0.41 0.82 16 42 H 0.03 0.70 7.45 -51.93 -0.39 0.31 16 43 H 0.04 1.06 7.32 -51.93 -0.38 0.68 16 44 H 0.00 -0.02 6.46 -51.93 -0.34 -0.36 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.06 1.12 6.72 -51.93 -0.35 0.77 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 1.32 7.03 -51.93 -0.36 0.95 16 50 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -32.22 389.96 -10.00 -42.22 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.80 Total: -0.65 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.52 Total: -1.16 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.40 Total: -49.64 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.13 Total: -13.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.22 -10.00 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985598010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.413 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds