Wall clock time and date at job start Wed Apr 1 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.86684 * 2 1 4 4 C 1.54705 * 110.94428 * 123.74758 * 2 1 3 5 5 O 1.43745 * 102.82035 * 143.58061 * 4 2 1 6 6 C 1.35987 * 109.33938 * 332.33338 * 5 4 2 7 7 C 1.39596 * 129.70460 * 198.61972 * 6 5 4 8 8 C 1.37472 * 120.43129 * 180.47130 * 7 6 5 9 9 C 1.39756 * 120.20247 * 359.95528 * 8 7 6 10 10 C 1.47590 * 120.27206 * 179.81404 * 9 8 7 11 11 O 1.21585 * 120.00776 * 134.25439 * 10 9 8 12 12 N 1.34781 * 119.99663 * 314.26246 * 10 9 8 13 13 C 1.46922 * 120.63202 * 3.93040 * 12 10 9 14 14 C 1.52760 * 109.01126 * 233.58616 * 13 12 10 15 15 C 1.53039 * 109.38539 * 305.59126 * 14 13 12 16 16 N 1.46494 * 109.44932 * 181.25177 * 15 14 13 17 17 C 1.46506 * 120.00212 * 299.93802 * 16 15 14 18 18 C 1.36937 * 120.00252 * 119.93790 * 16 15 14 19 19 H 1.07998 * 119.99698 * 24.31542 * 18 16 15 20 20 C 1.38811 * 120.00000 * 204.31653 * 18 16 15 21 21 N 1.31616 * 120.00229 * 14.79980 * 20 18 16 22 22 Si 1.86803 * 119.99605 * 194.79695 * 20 18 16 23 23 H 1.48499 * 109.47305 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47024 * 120.00440 * 22 20 18 25 25 H 1.48506 * 109.47082 * 239.99863 * 22 20 18 26 26 C 1.53043 * 109.53866 * 61.23654 * 15 14 13 27 27 C 1.46932 * 120.62672 * 184.21919 * 12 10 9 28 28 C 1.39816 * 119.46154 * 359.83732 * 9 8 7 29 29 C 1.37307 * 119.86643 * 359.97438 * 28 9 8 30 30 H 1.08995 * 109.47642 * 297.70806 * 1 2 3 31 31 H 1.09003 * 109.46835 * 57.70463 * 1 2 3 32 32 H 1.08998 * 109.47085 * 177.70222 * 1 2 3 33 33 H 1.08998 * 110.74431 * 25.24491 * 4 2 1 34 34 H 1.09006 * 110.74268 * 261.90977 * 4 2 1 35 35 H 1.08002 * 119.78666 * 0.44699 * 7 6 5 36 36 H 1.07995 * 119.90232 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.59042 * 353.42677 * 13 12 10 38 38 H 1.08998 * 109.58584 * 113.84770 * 13 12 10 39 39 H 1.08997 * 109.56911 * 185.55269 * 14 13 12 40 40 H 1.09001 * 109.35922 * 65.50345 * 14 13 12 41 41 H 1.08992 * 109.45752 * 301.21968 * 15 14 13 42 42 H 1.09001 * 109.47216 * 92.71703 * 17 16 15 43 43 H 1.09003 * 109.47197 * 212.71876 * 17 16 15 44 44 H 1.09001 * 109.46950 * 332.71478 * 17 16 15 45 45 H 0.97003 * 119.99980 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.49795 * 178.68348 * 26 15 14 47 47 H 1.09002 * 109.49482 * 58.58716 * 26 15 14 48 48 H 1.09001 * 109.58197 * 246.14519 * 27 12 10 49 49 H 1.08995 * 109.59192 * 6.43399 * 27 12 10 50 50 H 1.08009 * 120.06814 * 179.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0830 -0.8027 1.2014 5 8 3.2504 -1.4361 0.6516 6 6 3.0791 -1.6127 -0.6859 7 6 3.7484 -2.4652 -1.5657 8 6 3.4229 -2.4825 -2.9013 9 6 2.4164 -1.6454 -3.3905 10 6 2.0686 -1.6598 -4.8248 11 8 0.9024 -1.6911 -5.1674 12 7 3.0438 -1.6383 -5.7549 13 6 4.4576 -1.6873 -5.3584 14 6 5.1941 -0.5103 -5.9954 15 6 4.9644 -0.5261 -7.5084 16 7 5.6945 0.5847 -8.1243 17 6 5.3927 1.9646 -7.7357 18 6 6.6590 0.3331 -9.0632 19 1 6.6298 -0.5824 -9.6353 20 6 7.6740 1.2549 -9.2796 21 7 7.8870 2.2165 -8.4065 22 14 8.7378 1.1305 -10.8101 23 1 8.2974 -0.0294 -11.6261 24 1 8.6045 2.3757 -11.6082 25 1 10.1569 0.9467 -10.4130 26 6 3.4694 -0.3780 -7.8006 27 6 2.7132 -1.5591 -7.1843 28 6 1.7418 -0.7939 -2.5103 29 6 2.0720 -0.7873 -1.1775 30 1 -0.3634 0.4778 0.9097 31 1 -0.3633 0.5491 -0.8687 32 1 -0.3633 -1.0268 -0.0412 33 1 1.3599 -1.5475 1.5337 34 1 2.3550 -0.1353 2.0192 35 1 4.5271 -3.1151 -1.1949 36 1 3.9465 -3.1451 -3.5744 37 1 4.5354 -1.6210 -4.2732 38 1 4.9014 -2.6216 -5.7021 39 1 6.2612 -0.5922 -5.7886 40 1 4.8131 0.4224 -5.5793 41 1 5.3231 -1.4692 -7.9202 42 1 6.0595 2.2690 -6.9289 43 1 5.5353 2.6229 -8.5927 44 1 4.3589 2.0288 -7.3963 45 1 8.5966 2.8604 -8.5576 46 1 3.3089 -0.3658 -8.8787 47 1 3.1046 0.5534 -7.3675 48 1 3.0119 -2.4828 -7.6801 49 1 1.6400 -1.4109 -7.3036 50 1 0.9626 -0.1426 -2.8779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985598010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:03 Heat of formation + Delta-G solvation = -26.590335 kcal Electronic energy + Delta-G solvation = -30610.494363 eV Core-core repulsion = 26603.231929 eV Total energy + Delta-G solvation = -4007.262434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.36821 -41.30218 -39.09548 -38.09734 -36.72634 -35.15788 -33.96310 -32.47165 -31.65762 -31.32673 -30.56669 -28.02491 -27.55825 -26.68458 -25.07505 -24.35236 -23.77525 -23.17805 -21.83573 -21.25239 -19.96177 -18.79352 -18.65545 -18.36381 -17.45425 -17.20881 -16.94564 -16.87621 -16.14512 -15.78710 -15.52282 -15.38885 -15.16393 -14.99019 -14.78262 -14.69211 -14.46218 -14.26885 -14.15927 -13.76588 -13.71349 -13.52895 -13.18020 -13.12479 -13.01595 -12.84839 -12.68872 -12.62409 -12.38480 -12.19504 -12.11663 -12.03570 -11.85207 -11.78102 -11.68042 -11.57487 -11.26339 -10.93084 -10.61086 -10.00654 -9.72917 -9.20101 -8.73484 -7.81209 -5.29337 -0.12222 0.22808 1.46592 1.48966 1.55704 1.58676 1.95437 2.22943 2.51798 2.61869 3.29768 3.32384 3.39435 3.58116 3.63633 3.76081 3.88112 4.00795 4.08795 4.12709 4.14239 4.18850 4.31940 4.38740 4.42236 4.47461 4.54648 4.57458 4.66574 4.71589 4.78729 4.80418 4.83293 4.90212 4.98040 5.00914 5.02233 5.03251 5.10786 5.21670 5.23150 5.24864 5.30396 5.35994 5.41570 5.49669 5.58098 5.68465 5.69005 6.06920 6.33259 6.36731 7.04205 7.16795 7.89543 8.35648 9.22411 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.002496 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.899856 B =11213.292158 C =11800.012308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 H 0.104 0.896 4 C 0.051 3.949 5 O -0.315 6.315 6 C 0.117 3.883 7 C -0.144 4.144 8 C -0.050 4.050 9 C -0.171 4.171 10 C 0.565 3.435 11 O -0.581 6.581 12 N -0.597 5.597 13 C 0.104 3.896 14 C -0.135 4.135 15 C 0.174 3.826 16 N -0.610 5.610 17 C 0.181 3.819 18 C -0.259 4.259 19 H 0.073 0.927 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.265 1.265 24 H -0.295 1.295 25 H -0.293 1.293 26 C -0.133 4.133 27 C 0.122 3.878 28 C -0.028 4.028 29 C -0.183 4.183 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.000 1.000 43 H 0.012 0.988 44 H 0.022 0.978 45 H 0.246 0.754 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 -9.427 19.430 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.122 0.878 4 C -0.023 4.023 5 O -0.228 6.228 6 C 0.071 3.929 7 C -0.163 4.163 8 C -0.069 4.069 9 C -0.175 4.175 10 C 0.355 3.645 11 O -0.462 6.462 12 N -0.328 5.328 13 C -0.018 4.018 14 C -0.175 4.175 15 C 0.067 3.933 16 N -0.332 5.332 17 C 0.036 3.964 18 C -0.389 4.389 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.223 1.223 25 H -0.220 1.220 26 C -0.173 4.173 27 C 0.000 4.000 28 C -0.046 4.046 29 C -0.184 4.184 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.180 0.820 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.019 0.981 43 H 0.030 0.970 44 H 0.040 0.960 45 H 0.056 0.944 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.972 -9.378 19.363 25.122 hybrid contribution 0.755 0.835 -1.083 1.563 sum -12.217 -8.543 18.279 23.587 Atomic orbital electron populations 1.21713 0.91726 1.02617 1.03463 1.21519 0.98355 0.99759 0.90252 0.87809 1.24285 0.85268 0.96314 0.96395 1.86777 1.40906 1.77239 1.17914 1.20070 0.94534 0.93726 0.84559 1.20457 1.03704 1.00534 0.91559 1.21287 0.93631 0.96880 0.95060 1.19647 1.01750 1.03614 0.92456 1.18464 0.84563 0.75355 0.86154 1.90736 1.20131 1.52642 1.82732 1.48125 1.06957 1.71133 1.06612 1.22227 0.78769 0.99200 1.01643 1.22224 0.99990 0.97928 0.97363 1.20523 0.90388 0.90985 0.91398 1.44168 1.41488 1.01218 1.46288 1.20386 0.93690 0.85345 0.96963 1.19576 1.02365 1.05374 1.11586 0.90974 1.25773 0.98807 0.99288 1.00969 1.70236 1.33450 1.19135 1.35563 0.85237 0.78207 0.77375 0.79812 1.18911 1.22255 1.21993 1.22281 0.96559 0.97709 1.00764 1.21598 1.00413 0.98819 0.79204 1.20208 0.97032 0.96419 0.90989 1.20891 1.01333 1.01093 0.95102 0.89548 0.92354 0.92463 0.88901 0.84886 0.82460 0.82039 0.87443 0.88538 0.91892 0.94001 0.91492 0.98134 0.96953 0.95952 0.94444 0.91022 0.93584 0.89348 0.89925 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.16 71.98 0.66 -0.90 16 2 C -0.08 -1.13 3.73 -10.65 -0.04 -1.17 16 3 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.05 0.59 7.55 72.56 0.55 1.14 16 5 O -0.31 -5.94 11.09 -93.41 -1.04 -6.98 16 6 C 0.12 2.41 7.05 22.83 0.16 2.57 16 7 C -0.14 -2.67 10.05 22.42 0.23 -2.45 16 8 C -0.05 -0.99 7.29 22.46 0.16 -0.83 16 9 C -0.17 -4.30 5.18 -20.06 -0.10 -4.41 16 10 C 0.56 16.84 7.29 86.71 0.63 17.47 16 11 O -0.58 -21.08 16.43 -3.98 -0.07 -21.15 16 12 N -0.60 -16.48 2.98 -823.43 -2.45 -18.93 16 13 C 0.10 2.56 5.18 86.22 0.45 3.00 16 14 C -0.13 -4.55 5.32 30.53 0.16 -4.38 16 15 C 0.17 6.60 2.55 45.02 0.11 6.72 16 16 N -0.61 -29.80 2.80 -702.63 -1.97 -31.77 16 17 C 0.18 9.08 8.07 127.77 1.03 10.11 16 18 C -0.26 -13.88 9.55 84.03 0.80 -13.08 16 19 H 0.07 3.73 7.84 -2.91 -0.02 3.71 16 20 C -0.05 -2.95 5.04 84.86 0.43 -2.53 16 21 N -0.94 -55.39 10.91 21.65 0.24 -55.16 16 22 Si 0.96 44.71 29.58 68.60 2.03 46.74 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 C -0.13 -4.44 5.32 30.67 0.16 -4.28 16 27 C 0.12 3.43 6.42 86.36 0.55 3.99 16 28 C -0.03 -0.66 9.57 22.43 0.21 -0.45 16 29 C -0.18 -3.77 5.68 -19.55 -0.11 -3.88 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.83 7.92 -2.39 -0.02 0.81 16 34 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.16 2.45 6.59 -2.91 -0.02 2.43 16 37 H 0.11 2.33 4.23 -2.39 -0.01 2.32 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.04 1.55 7.72 -2.39 -0.02 1.53 16 41 H 0.07 2.50 7.87 -2.39 -0.02 2.48 16 42 H 0.00 0.02 7.45 -2.39 -0.02 0.00 16 43 H 0.01 0.65 7.32 -2.39 -0.02 0.63 16 44 H 0.02 0.99 6.46 -2.39 -0.02 0.97 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.05 1.67 6.72 -2.39 -0.02 1.65 16 48 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 49 H 0.08 2.44 7.03 -2.39 -0.02 2.43 16 50 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -70.74 389.96 3.73 -67.01 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.94 Total: 13.57 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.05 Total: 6.66 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.19 Total: -105.86 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.10 Total: -28.13 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.74 3.73 -67.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985598010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.419 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds