Wall clock time and date at job start Wed Apr 1 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.99859 * 2 1 4 4 C 1.54324 * 109.88432 * 121.09350 * 2 1 3 5 5 H 1.08993 * 110.72327 * 215.76778 * 4 2 1 6 6 N 1.46898 * 110.71846 * 338.86109 * 4 2 1 7 7 C 1.46904 * 111.00150 * 205.00113 * 6 4 2 8 8 C 1.50701 * 109.47048 * 180.02562 * 7 6 4 9 9 C 1.38305 * 119.93294 * 89.99722 * 8 7 6 10 10 C 1.38099 * 120.06530 * 180.02562 * 9 8 7 11 11 C 1.38875 * 119.93402 * 359.97438 * 10 9 8 12 12 O 1.35753 * 120.06794 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00310 * 5.53843 * 12 11 10 14 14 H 1.08001 * 119.99598 * 354.93752 * 13 12 11 15 15 C 1.38658 * 120.00407 * 174.94525 * 13 12 11 16 16 N 1.31551 * 119.99580 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00052 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47382 * 59.99429 * 17 15 13 19 19 H 1.48500 * 109.46954 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47190 * 299.99603 * 17 15 13 21 21 C 1.38878 * 119.86117 * 0.27980 * 11 10 9 22 22 C 1.38096 * 119.92905 * 359.44524 * 21 11 10 23 23 C 1.55156 * 102.94411 * 97.22374 * 4 2 1 24 24 C 1.54913 * 101.57994 * 35.50569 * 23 4 2 25 25 N 1.47018 * 109.88635 * 238.90188 * 2 1 3 26 26 C 1.34777 * 125.64656 * 59.48326 * 25 2 1 27 27 O 1.21278 * 120.00366 * 0.02562 * 26 25 2 28 28 C 1.50703 * 120.00139 * 180.02562 * 26 25 2 29 29 C 1.52995 * 117.50030 * 248.62510 * 28 26 25 30 30 C 1.52991 * 60.00189 * 252.50564 * 29 28 26 31 31 H 1.08994 * 109.47008 * 298.90586 * 1 2 3 32 32 H 1.09001 * 109.47045 * 58.90832 * 1 2 3 33 33 H 1.09001 * 109.46939 * 178.90620 * 1 2 3 34 34 H 1.00899 * 111.00395 * 81.04669 * 6 4 2 35 35 H 1.09001 * 109.47090 * 60.00061 * 7 6 4 36 36 H 1.09001 * 109.46807 * 299.99770 * 7 6 4 37 37 H 1.07998 * 119.96187 * 0.02562 * 9 8 7 38 38 H 1.08004 * 120.02899 * 180.02562 * 10 9 8 39 39 H 0.97005 * 119.99547 * 180.02562 * 16 15 13 40 40 H 1.08004 * 120.03406 * 179.71791 * 21 11 10 41 41 H 1.08002 * 119.96357 * 180.27680 * 22 21 11 42 42 H 1.09001 * 111.00123 * 153.57584 * 23 4 2 43 43 H 1.08996 * 111.00280 * 277.43338 * 23 4 2 44 44 H 1.08995 * 110.36585 * 204.15439 * 24 23 4 45 45 H 1.09002 * 110.36862 * 81.82852 * 24 23 4 46 46 H 1.09003 * 115.54699 * 34.33302 * 28 26 25 47 47 H 1.08999 * 117.50031 * 0.02562 * 29 28 26 48 48 H 1.09001 * 117.49784 * 145.01690 * 29 28 26 49 49 H 1.09002 * 117.50634 * 252.50963 * 30 29 28 50 50 H 1.09007 * 117.51582 * 107.47732 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9639 -0.2812 1.6201 6 7 1.0265 -0.8027 2.2904 7 6 1.6356 -0.9504 3.6190 8 6 0.5522 -1.0018 4.6653 9 6 0.0065 -2.2178 5.0346 10 6 -0.9867 -2.2680 5.9927 11 6 -1.4371 -1.0960 6.5860 12 8 -2.4130 -1.1422 7.5286 13 6 -2.8221 -2.3637 7.9267 14 1 -2.4357 -3.2475 7.4410 15 6 -3.7391 -2.4852 8.9597 16 7 -4.2096 -1.4086 9.5515 17 14 -4.3053 -4.1775 9.5117 18 1 -3.1347 -4.9639 9.9768 19 1 -5.2790 -4.0353 10.6239 20 1 -4.9521 -4.8788 8.3736 21 6 -0.8908 0.1240 6.2093 22 6 0.1061 0.1671 5.2547 23 6 2.3519 -2.1695 0.6925 24 6 2.8569 -1.8498 -0.7367 25 7 2.0301 -0.7141 -1.1838 26 6 1.7742 -0.3854 -2.4656 27 8 1.0769 0.5743 -2.7180 28 6 2.3547 -1.2103 -3.5853 29 6 3.4325 -0.5610 -4.4557 30 6 2.0277 -0.7859 -5.0184 31 1 -0.3633 0.4967 0.8996 32 1 -0.3633 0.5307 -0.8800 33 1 -0.3633 -1.0275 -0.0196 34 1 0.3656 -1.5437 2.1112 35 1 2.2905 -0.1014 3.8149 36 1 2.2161 -1.8724 3.6520 37 1 0.3576 -3.1289 4.5731 38 1 -1.4122 -3.2180 6.2809 39 1 -4.8508 -1.4937 10.2744 40 1 -1.2423 1.0377 6.6656 41 1 0.5344 1.1151 4.9645 42 1 3.1271 -2.6617 1.2798 43 1 1.4452 -2.7735 0.6605 44 1 2.7088 -2.7080 -1.3921 45 1 3.9092 -1.5667 -0.7128 46 1 2.4449 -2.2779 -3.3847 47 1 3.7221 0.4626 -4.2183 48 1 4.2321 -1.2015 -4.8279 49 1 1.9030 -1.5742 -5.7608 50 1 1.3923 0.0898 -5.1514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985841515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:02 Heat of formation + Delta-G solvation = -2.837195 kcal Electronic energy + Delta-G solvation = -29100.495544 eV Core-core repulsion = 25094.263124 eV Total energy + Delta-G solvation = -4006.232421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.72600 -39.15761 -38.64083 -36.88908 -36.28044 -34.85011 -32.36729 -31.49167 -31.17017 -30.17410 -28.80612 -25.84622 -25.53038 -24.97274 -23.71769 -22.89024 -22.75948 -21.96295 -20.50359 -20.27742 -19.08715 -18.00358 -17.85969 -17.04331 -16.49535 -16.05538 -15.62525 -15.26303 -14.92792 -14.64945 -14.53212 -14.33129 -13.88306 -13.78988 -13.69675 -13.53569 -13.33414 -12.98565 -12.89642 -12.70295 -12.58088 -12.41824 -12.31916 -11.98837 -11.94892 -11.66920 -11.57164 -11.25922 -11.13600 -11.07354 -10.94584 -10.89364 -10.78184 -10.67681 -10.55236 -10.44438 -9.97231 -9.35447 -8.92361 -8.85134 -8.42274 -8.18142 -7.20142 -6.46337 -4.05327 2.21446 2.22101 2.25123 2.61298 3.11636 3.12430 3.15603 3.46217 3.94893 3.95682 4.06406 4.23181 4.36932 4.46185 4.48842 4.58658 4.69408 4.74922 4.89729 4.96985 5.08618 5.14775 5.16199 5.26484 5.29935 5.30158 5.35771 5.36802 5.47663 5.48637 5.52724 5.64796 5.70602 5.72778 5.77151 5.79702 5.88817 5.98801 6.20206 6.27165 6.39940 6.42312 6.69491 6.87754 6.96540 7.04623 7.23941 7.25307 7.29540 7.40424 7.43805 7.81914 7.93480 7.98414 8.99042 9.69334 10.71512 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023756 B = 0.001727 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.345519 B =16212.332977 C =16356.081650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.076 0.924 4 C 0.082 3.918 5 H 0.092 0.908 6 N -0.670 5.670 7 C 0.119 3.881 8 C -0.187 4.187 9 C -0.065 4.065 10 C -0.235 4.235 11 C 0.156 3.844 12 O -0.177 6.177 13 C -0.393 4.393 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.195 4.195 22 C -0.051 4.051 23 C -0.165 4.165 24 C 0.104 3.896 25 N -0.613 5.613 26 C 0.558 3.442 27 O -0.536 6.536 28 C -0.193 4.193 29 C -0.152 4.152 30 C -0.148 4.148 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.347 0.653 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.271 0.729 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.122 0.878 47 H 0.099 0.901 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.196 -2.968 -22.918 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.094 0.906 4 C -0.030 4.030 5 H 0.110 0.890 6 N -0.301 5.301 7 C -0.009 4.009 8 C -0.188 4.188 9 C -0.084 4.084 10 C -0.255 4.255 11 C 0.102 3.898 12 O -0.080 6.080 13 C -0.469 4.469 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.496 5.496 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.214 4.214 22 C -0.070 4.070 23 C -0.205 4.205 24 C -0.020 4.020 25 N -0.347 5.347 26 C 0.347 3.653 27 O -0.413 6.413 28 C -0.214 4.214 29 C -0.190 4.190 30 C -0.185 4.185 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.167 0.833 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.120 0.880 38 H 0.143 0.857 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.139 0.861 47 H 0.117 0.883 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.435 -1.501 -22.731 28.090 hybrid contribution 0.043 -2.102 0.347 2.131 sum 16.478 -3.603 -22.384 28.028 Atomic orbital electron populations 1.21933 0.93695 1.01968 1.03340 1.21533 0.95879 0.95553 0.83003 0.90611 1.22603 0.95084 0.93844 0.91458 0.88957 1.60546 1.15753 1.53011 1.00757 1.20652 0.94296 0.99539 0.86366 1.19074 1.03515 0.93463 1.02767 1.20572 0.95516 0.96099 0.96204 1.21109 1.02927 0.98780 1.02657 1.19412 0.87810 0.93362 0.89171 1.83980 1.44413 1.31820 1.47830 1.21269 1.25458 0.82418 1.17749 0.89153 1.25288 0.96282 0.99461 0.95467 1.70029 1.28717 1.28331 1.22558 0.85787 0.78780 0.80257 0.78635 1.19534 1.20254 1.19514 1.20232 1.01544 0.96073 1.03545 1.20466 0.95172 0.96855 0.94483 1.23555 1.02566 0.98750 0.95638 1.22247 0.94970 0.89133 0.95605 1.48523 1.50591 1.30514 1.05081 1.19260 0.80105 0.84271 0.81653 1.90700 1.38498 1.28998 1.83138 1.22187 1.07013 1.00169 0.92012 1.22924 0.92463 1.02092 1.01490 1.22961 0.98460 1.04051 0.93064 0.89630 0.92121 0.93346 0.83326 0.91044 0.95307 0.88007 0.85699 0.91949 0.86577 0.87027 0.89718 0.90225 0.90671 0.91107 0.86057 0.88270 0.87814 0.87904 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.26 37.16 0.31 -1.48 16 2 C 0.14 1.48 3.48 -66.96 -0.23 1.25 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.08 0.71 3.15 -65.88 -0.21 0.50 16 5 H 0.09 0.75 7.82 -51.93 -0.41 0.34 16 6 N -0.67 -7.19 4.76 -106.05 -0.50 -7.69 16 7 C 0.12 1.40 5.67 -4.97 -0.03 1.37 16 8 C -0.19 -2.96 5.40 -104.57 -0.56 -3.52 16 9 C -0.07 -1.12 9.69 -39.61 -0.38 -1.50 16 10 C -0.24 -4.97 9.17 -39.40 -0.36 -5.33 16 11 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 12 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 13 C -0.39 -10.90 9.49 30.89 0.29 -10.61 16 14 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 17 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.19 -4.07 9.99 -39.40 -0.39 -4.46 16 22 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 23 C -0.17 -1.11 6.67 -24.58 -0.16 -1.27 16 24 C 0.10 0.66 6.69 -2.53 -0.02 0.64 16 25 N -0.61 -5.77 3.08 -163.02 -0.50 -6.27 16 26 C 0.56 6.12 7.41 -10.98 -0.08 6.04 16 27 O -0.54 -7.92 15.16 5.56 0.08 -7.83 16 28 C -0.19 -1.45 5.53 -91.77 -0.51 -1.96 16 29 C -0.15 -0.92 10.23 -26.74 -0.27 -1.20 16 30 C -0.15 -1.03 10.04 -26.74 -0.27 -1.29 16 31 H 0.08 1.07 7.40 -51.93 -0.38 0.69 16 32 H 0.06 0.83 6.76 -51.93 -0.35 0.48 16 33 H 0.05 0.56 7.98 -51.93 -0.41 0.14 16 34 H 0.35 3.86 7.74 -39.29 -0.30 3.55 16 35 H 0.07 0.80 8.02 -51.93 -0.42 0.39 16 36 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.58 7.77 -51.93 -0.40 0.18 16 44 H 0.07 0.37 7.00 -51.93 -0.36 0.01 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.12 0.68 7.07 -51.93 -0.37 0.31 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.11 0.94 7.67 -51.93 -0.40 0.54 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -32.13 405.52 -10.44 -42.57 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.74 Total: 6.88 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -3.62 Total: -19.64 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.25 Total: -38.38 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.13 -10.44 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985841515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.735 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds