Wall clock time and date at job start Wed Apr 1 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.99859 * 2 1 4 4 C 1.54324 * 109.88432 * 121.09350 * 2 1 3 5 5 H 1.08993 * 110.72327 * 215.76778 * 4 2 1 6 6 N 1.46898 * 110.71846 * 338.86109 * 4 2 1 7 7 C 1.46904 * 111.00150 * 205.00113 * 6 4 2 8 8 C 1.50701 * 109.47048 * 180.02562 * 7 6 4 9 9 C 1.38305 * 119.93294 * 89.99722 * 8 7 6 10 10 C 1.38099 * 120.06530 * 180.02562 * 9 8 7 11 11 C 1.38875 * 119.93402 * 359.97438 * 10 9 8 12 12 O 1.35753 * 120.06794 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00310 * 5.53843 * 12 11 10 14 14 H 1.08001 * 119.99598 * 354.93752 * 13 12 11 15 15 C 1.38658 * 120.00407 * 174.94525 * 13 12 11 16 16 N 1.31551 * 119.99580 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00052 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47382 * 59.99429 * 17 15 13 19 19 H 1.48500 * 109.46954 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47190 * 299.99603 * 17 15 13 21 21 C 1.38878 * 119.86117 * 0.27980 * 11 10 9 22 22 C 1.38096 * 119.92905 * 359.44524 * 21 11 10 23 23 C 1.55156 * 102.94411 * 97.22374 * 4 2 1 24 24 C 1.54913 * 101.57994 * 35.50569 * 23 4 2 25 25 N 1.47018 * 109.88635 * 238.90188 * 2 1 3 26 26 C 1.34777 * 125.64656 * 59.48326 * 25 2 1 27 27 O 1.21278 * 120.00366 * 0.02562 * 26 25 2 28 28 C 1.50703 * 120.00139 * 180.02562 * 26 25 2 29 29 C 1.52995 * 117.50030 * 248.62510 * 28 26 25 30 30 C 1.52991 * 60.00189 * 252.50564 * 29 28 26 31 31 H 1.08994 * 109.47008 * 298.90586 * 1 2 3 32 32 H 1.09001 * 109.47045 * 58.90832 * 1 2 3 33 33 H 1.09001 * 109.46939 * 178.90620 * 1 2 3 34 34 H 1.00899 * 111.00395 * 81.04669 * 6 4 2 35 35 H 1.09001 * 109.47090 * 60.00061 * 7 6 4 36 36 H 1.09001 * 109.46807 * 299.99770 * 7 6 4 37 37 H 1.07998 * 119.96187 * 0.02562 * 9 8 7 38 38 H 1.08004 * 120.02899 * 180.02562 * 10 9 8 39 39 H 0.97005 * 119.99547 * 180.02562 * 16 15 13 40 40 H 1.08004 * 120.03406 * 179.71791 * 21 11 10 41 41 H 1.08002 * 119.96357 * 180.27680 * 22 21 11 42 42 H 1.09001 * 111.00123 * 153.57584 * 23 4 2 43 43 H 1.08996 * 111.00280 * 277.43338 * 23 4 2 44 44 H 1.08995 * 110.36585 * 204.15439 * 24 23 4 45 45 H 1.09002 * 110.36862 * 81.82852 * 24 23 4 46 46 H 1.09003 * 115.54699 * 34.33302 * 28 26 25 47 47 H 1.08999 * 117.50031 * 0.02562 * 29 28 26 48 48 H 1.09001 * 117.49784 * 145.01690 * 29 28 26 49 49 H 1.09002 * 117.50634 * 252.50963 * 30 29 28 50 50 H 1.09007 * 117.51582 * 107.47732 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9639 -0.2812 1.6201 6 7 1.0265 -0.8027 2.2904 7 6 1.6356 -0.9504 3.6190 8 6 0.5522 -1.0018 4.6653 9 6 0.0065 -2.2178 5.0346 10 6 -0.9867 -2.2680 5.9927 11 6 -1.4371 -1.0960 6.5860 12 8 -2.4130 -1.1422 7.5286 13 6 -2.8221 -2.3637 7.9267 14 1 -2.4357 -3.2475 7.4410 15 6 -3.7391 -2.4852 8.9597 16 7 -4.2096 -1.4086 9.5515 17 14 -4.3053 -4.1775 9.5117 18 1 -3.1347 -4.9639 9.9768 19 1 -5.2790 -4.0353 10.6239 20 1 -4.9521 -4.8788 8.3736 21 6 -0.8908 0.1240 6.2093 22 6 0.1061 0.1671 5.2547 23 6 2.3519 -2.1695 0.6925 24 6 2.8569 -1.8498 -0.7367 25 7 2.0301 -0.7141 -1.1838 26 6 1.7742 -0.3854 -2.4656 27 8 1.0769 0.5743 -2.7180 28 6 2.3547 -1.2103 -3.5853 29 6 3.4325 -0.5610 -4.4557 30 6 2.0277 -0.7859 -5.0184 31 1 -0.3633 0.4967 0.8996 32 1 -0.3633 0.5307 -0.8800 33 1 -0.3633 -1.0275 -0.0196 34 1 0.3656 -1.5437 2.1112 35 1 2.2905 -0.1014 3.8149 36 1 2.2161 -1.8724 3.6520 37 1 0.3576 -3.1289 4.5731 38 1 -1.4122 -3.2180 6.2809 39 1 -4.8508 -1.4937 10.2744 40 1 -1.2423 1.0377 6.6656 41 1 0.5344 1.1151 4.9645 42 1 3.1271 -2.6617 1.2798 43 1 1.4452 -2.7735 0.6605 44 1 2.7088 -2.7080 -1.3921 45 1 3.9092 -1.5667 -0.7128 46 1 2.4449 -2.2779 -3.3847 47 1 3.7221 0.4626 -4.2183 48 1 4.2321 -1.2015 -4.8279 49 1 1.9030 -1.5742 -5.7608 50 1 1.3923 0.0898 -5.1514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985841515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:00 Heat of formation + Delta-G solvation = -22.539069 kcal Electronic energy + Delta-G solvation = -29101.349882 eV Core-core repulsion = 25094.263124 eV Total energy + Delta-G solvation = -4007.086758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47466 -40.75503 -39.50139 -38.40485 -36.97260 -35.86797 -34.27894 -32.48700 -31.99564 -31.73483 -30.03995 -27.51522 -26.48100 -25.97262 -24.74084 -23.59860 -23.40130 -23.28634 -21.95191 -21.03103 -19.81762 -19.81474 -18.86373 -18.51299 -17.24047 -16.85718 -16.67779 -16.39595 -16.25619 -15.95280 -15.57967 -15.46886 -15.26987 -15.15957 -14.85989 -14.55256 -14.31729 -14.19813 -13.93167 -13.83421 -13.59817 -13.50898 -13.30221 -13.11649 -12.89906 -12.79720 -12.57068 -12.42992 -12.30519 -12.30313 -12.17550 -12.06234 -11.73302 -11.68156 -11.50097 -11.41014 -11.15057 -10.81896 -10.77654 -9.73864 -9.68245 -9.25036 -8.86594 -8.46013 -6.14269 0.64474 0.71211 1.34853 1.45706 1.46853 1.51379 1.90584 2.18425 2.80627 2.91211 3.11599 3.36069 3.46509 3.55584 3.64015 3.82318 3.86131 3.97267 4.06343 4.12934 4.13288 4.16296 4.23969 4.26221 4.38162 4.45940 4.55357 4.65071 4.67727 4.72702 4.73574 4.79164 4.85105 4.86246 4.88806 5.01001 5.04200 5.10685 5.13653 5.15449 5.17452 5.21418 5.35174 5.39927 5.45018 5.61364 5.74655 5.85339 6.04416 6.14382 6.29740 6.47789 6.52804 6.98575 7.15214 7.80852 8.77144 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023756 B = 0.001727 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.345519 B =16212.332977 C =16356.081650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.141 3.859 3 H 0.059 0.941 4 C 0.090 3.910 5 H 0.107 0.893 6 N -0.681 5.681 7 C 0.125 3.875 8 C -0.156 4.156 9 C -0.060 4.060 10 C -0.245 4.245 11 C 0.112 3.888 12 O -0.236 6.236 13 C -0.413 4.413 14 H 0.102 0.898 15 C -0.025 4.025 16 N -0.922 5.922 17 Si 1.019 2.981 18 H -0.256 1.256 19 H -0.273 1.273 20 H -0.257 1.257 21 C -0.210 4.210 22 C -0.048 4.048 23 C -0.157 4.157 24 C 0.101 3.899 25 N -0.612 5.612 26 C 0.546 3.454 27 O -0.589 6.589 28 C -0.197 4.197 29 C -0.137 4.137 30 C -0.157 4.157 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.049 0.951 34 H 0.346 0.654 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.107 0.893 41 H 0.142 0.858 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.149 0.851 47 H 0.085 0.915 48 H 0.134 0.866 49 H 0.127 0.873 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.000 -5.944 -25.259 33.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.037 3.963 3 H 0.077 0.923 4 C -0.021 4.021 5 H 0.125 0.875 6 N -0.312 5.312 7 C -0.002 4.002 8 C -0.157 4.157 9 C -0.078 4.078 10 C -0.264 4.264 11 C 0.062 3.938 12 O -0.143 6.143 13 C -0.489 4.489 14 H 0.120 0.880 15 C -0.222 4.222 16 N -0.560 5.560 17 Si 0.838 3.162 18 H -0.181 1.181 19 H -0.197 1.197 20 H -0.182 1.182 21 C -0.229 4.229 22 C -0.067 4.067 23 C -0.196 4.196 24 C -0.021 4.021 25 N -0.344 5.344 26 C 0.337 3.663 27 O -0.470 6.470 28 C -0.217 4.217 29 C -0.174 4.174 30 C -0.194 4.194 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.166 0.834 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.160 0.840 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.160 0.840 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.167 0.833 47 H 0.103 0.897 48 H 0.152 0.848 49 H 0.145 0.855 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.312 -4.496 -25.113 32.610 hybrid contribution -0.880 -1.020 0.775 1.555 sum 19.432 -5.516 -24.337 31.628 Atomic orbital electron populations 1.21789 0.95270 1.01379 1.01461 1.21474 0.94571 0.95548 0.84724 0.92266 1.22535 0.94548 0.95196 0.89801 0.87511 1.60391 1.16634 1.53364 1.00852 1.20644 0.92697 1.01670 0.85230 1.19644 1.02317 0.92142 1.01590 1.20977 0.93797 0.98410 0.94617 1.21242 1.04060 0.97464 1.03621 1.19970 0.88600 0.95518 0.89730 1.83942 1.47344 1.32375 1.50610 1.21783 1.25884 0.82967 1.18296 0.88045 1.26609 0.96175 1.04153 0.95276 1.70188 1.30569 1.31198 1.24053 0.84648 0.78608 0.74568 0.78388 1.18057 1.19750 1.18159 1.20469 1.02729 0.95005 1.04721 1.20861 0.93692 0.99109 0.93015 1.23524 1.03160 0.97104 0.95812 1.22516 0.95310 0.88554 0.95721 1.48607 1.50354 1.31090 1.04392 1.19979 0.79531 0.84009 0.82825 1.90675 1.40900 1.31397 1.84019 1.22254 1.07760 1.00931 0.90775 1.23013 0.92593 1.01848 0.99954 1.23009 0.98974 1.03903 0.93527 0.90608 0.94866 0.93145 0.83439 0.89595 0.92640 0.83983 0.86531 0.91919 0.87519 0.84010 0.87387 0.90635 0.88677 0.89199 0.83343 0.89653 0.84756 0.85524 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.26 71.98 0.59 -2.71 16 2 C 0.14 2.67 3.48 45.34 0.16 2.83 16 3 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 4 C 0.09 1.19 3.15 46.10 0.15 1.34 16 5 H 0.11 1.19 7.82 -2.39 -0.02 1.17 16 6 N -0.68 -11.90 4.76 -489.45 -2.33 -14.23 16 7 C 0.13 2.28 5.67 85.56 0.49 2.76 16 8 C -0.16 -4.37 5.40 -19.83 -0.11 -4.47 16 9 C -0.06 -1.87 9.69 22.25 0.22 -1.65 16 10 C -0.24 -10.34 9.17 22.39 0.21 -10.14 16 11 C 0.11 5.59 6.65 22.58 0.15 5.74 16 12 O -0.24 -14.38 9.76 -22.75 -0.22 -14.60 16 13 C -0.41 -24.17 9.49 67.92 0.64 -23.53 16 14 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 15 C -0.02 -1.42 5.49 84.84 0.47 -0.96 16 16 N -0.92 -57.14 13.67 21.61 0.30 -56.85 16 17 Si 1.02 42.86 29.55 68.60 2.03 44.89 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 C -0.21 -9.01 9.99 22.39 0.22 -8.78 16 22 C -0.05 -1.58 9.69 22.25 0.22 -1.37 16 23 C -0.16 -1.30 6.67 31.99 0.21 -1.09 16 24 C 0.10 0.82 6.69 86.86 0.58 1.40 16 25 N -0.61 -10.19 3.08 -788.05 -2.43 -12.62 16 26 C 0.55 11.51 7.41 87.66 0.65 12.16 16 27 O -0.59 -18.08 15.16 -3.02 -0.05 -18.12 16 28 C -0.20 -2.49 5.53 -11.54 -0.06 -2.56 16 29 C -0.14 -1.32 10.23 30.59 0.31 -1.00 16 30 C -0.16 -1.95 10.04 30.59 0.31 -1.65 16 31 H 0.08 1.89 7.40 -2.39 -0.02 1.87 16 32 H 0.03 0.95 6.76 -2.39 -0.02 0.93 16 33 H 0.05 1.12 7.98 -2.39 -0.02 1.10 16 34 H 0.35 6.34 7.74 -89.70 -0.69 5.64 16 35 H 0.09 1.42 8.02 -2.39 -0.02 1.40 16 36 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 37 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 38 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 39 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 40 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 41 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 42 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.07 0.75 7.77 -2.39 -0.02 0.73 16 44 H 0.09 0.45 7.00 -2.39 -0.02 0.43 16 45 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.15 1.04 7.07 -2.39 -0.02 1.02 16 47 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 1.47 7.67 -2.38 -0.02 1.45 16 Total: -1.00 -79.31 405.52 2.95 -76.36 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.26 Total: 28.83 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 5.40 Total: -33.67 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -4.46 Total: -83.69 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.27 Total: -32.72 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -79.31 2.95 -76.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985841515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.822 kcal (2) G-P(sol) polarization free energy of solvation -79.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds