Wall clock time and date at job start Wed Apr 1 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.08995 * 110.72489 * 259.97246 * 4 2 1 6 6 N 1.46500 * 110.72001 * 23.24769 * 4 2 1 7 7 C 1.36938 * 120.00415 * 205.00045 * 6 4 2 8 8 H 1.07993 * 119.99642 * 359.97438 * 7 6 4 9 9 C 1.38803 * 120.00131 * 180.02562 * 7 6 4 10 10 N 1.31627 * 120.00090 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 120.00254 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46951 * 90.00264 * 11 9 7 13 13 H 1.48497 * 109.47173 * 210.00217 * 11 9 7 14 14 H 1.48497 * 109.47145 * 330.00476 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34777 * 125.64703 * 61.58893 * 17 2 1 19 19 O 1.21285 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99771 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.46945 * 180.02562 * 20 18 17 22 22 C 1.38297 * 120.00938 * 269.72767 * 21 20 18 23 23 C 1.37964 * 119.96050 * 179.81145 * 22 21 20 24 24 C 1.39142 * 120.21240 * 0.52820 * 23 22 21 25 25 C 1.38374 * 119.69797 * 359.56311 * 24 23 22 26 26 C 1.38102 * 120.00970 * 90.00306 * 21 20 18 27 27 C 1.50768 * 121.40308 * 180.55398 * 25 24 23 28 28 C 1.53070 * 109.68798 * 342.02278 * 27 25 24 29 29 C 1.53400 * 108.31920 * 48.18586 * 28 27 25 30 30 O 1.35844 * 118.50295 * 179.31052 * 24 23 22 31 31 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 32 32 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 33 33 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 34 34 H 0.97000 * 119.99753 * 24.99679 * 6 4 2 35 35 H 0.96994 * 120.00015 * 179.97438 * 10 9 7 36 36 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 37 37 H 1.08995 * 111.00914 * 206.38778 * 15 4 2 38 38 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 39 39 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 40 40 H 1.09001 * 109.47682 * 300.00397 * 20 18 17 41 41 H 1.09003 * 109.46941 * 60.00441 * 20 18 17 42 42 H 1.08009 * 120.01708 * 0.09607 * 22 21 20 43 43 H 1.08003 * 119.89588 * 180.27120 * 23 22 21 44 44 H 1.08005 * 119.84026 * 0.02562 * 26 21 20 45 45 H 1.09000 * 109.43625 * 102.08478 * 27 25 24 46 46 H 1.08995 * 109.43681 * 221.95320 * 27 25 24 47 47 H 1.09008 * 109.69200 * 288.47974 * 28 27 25 48 48 H 1.08998 * 109.72709 * 167.91850 * 28 27 25 49 49 H 1.09001 * 109.68121 * 175.61440 * 29 28 27 50 50 H 1.09000 * 109.68349 * 55.05793 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 2.3530 -0.0433 2.0201 6 7 1.0473 -1.6831 1.7497 7 6 1.0607 -2.0576 3.0668 8 1 1.8144 -1.6637 3.7324 9 6 0.1064 -2.9442 3.5461 10 7 0.1190 -3.3038 4.8122 11 14 -1.1970 -3.6261 2.3946 12 1 -0.7019 -4.8816 1.7748 13 1 -2.4367 -3.9082 3.1618 14 1 -1.4882 -2.6308 1.3317 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8072 -0.3655 -2.4653 19 8 1.1431 0.6172 -2.7189 20 6 2.3831 -1.1950 -3.5838 21 6 1.9908 -0.5934 -4.9086 22 6 0.8226 -0.9936 -5.5312 23 6 0.4624 -0.4393 -6.7422 24 6 1.2767 0.5141 -7.3457 25 6 2.4459 0.9112 -6.7213 26 6 2.8007 0.3536 -5.5041 27 6 3.3502 1.9501 -7.3346 28 6 3.0272 2.1009 -8.8232 29 6 1.5074 2.2435 -8.9747 30 8 0.8958 1.0265 -8.5447 31 1 -0.3633 0.4979 0.8990 32 1 -0.3633 -1.0275 -0.0183 33 1 -0.3634 0.5296 -0.8807 34 1 0.3705 -2.0371 1.1517 35 1 -0.5481 -3.9230 5.1472 36 1 4.1655 -0.8679 0.6615 37 1 3.4857 -2.4089 1.2832 38 1 3.6716 -2.0356 -1.3896 39 1 2.1903 -2.7735 -0.7093 40 1 3.4698 -1.2127 -3.5008 41 1 1.9971 -2.2122 -3.5178 42 1 0.1902 -1.7363 -5.0674 43 1 -0.4523 -0.7494 -7.2254 44 1 3.7150 0.6609 -5.0182 45 1 3.1984 2.9053 -6.8320 46 1 4.3889 1.6409 -7.2184 47 1 3.3692 1.2187 -9.3645 48 1 3.5208 2.9887 -9.2187 49 1 1.2585 2.4303 -10.0194 50 1 1.1530 3.0701 -8.3589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986401456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:19 Heat of formation + Delta-G solvation = -32.897647 kcal Electronic energy + Delta-G solvation = -30181.179288 eV Core-core repulsion = 26173.643348 eV Total energy + Delta-G solvation = -4007.535940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93239 -40.05938 -38.24203 -37.17725 -34.59677 -34.11886 -32.64872 -31.59020 -30.90944 -30.66968 -29.53093 -27.63531 -25.71269 -25.45406 -23.72424 -23.18911 -22.78208 -22.16988 -20.19754 -19.48001 -18.56215 -17.97943 -17.93269 -16.96011 -16.83010 -16.27261 -15.91627 -15.06721 -15.01212 -14.71099 -14.54216 -14.28883 -14.17630 -14.08029 -13.69343 -13.45727 -13.40339 -13.38027 -12.88538 -12.77251 -12.60039 -12.43885 -12.16726 -11.95122 -11.66592 -11.57998 -11.55979 -11.27158 -11.16919 -11.06171 -11.01665 -10.83244 -10.71638 -10.66835 -10.31984 -10.13595 -9.63004 -9.54372 -9.01158 -8.91702 -8.40966 -8.19476 -7.36111 -5.84161 -3.20550 1.18678 1.24469 2.80107 3.01325 3.17947 3.31918 3.35324 3.41235 3.63462 4.26463 4.34741 4.42034 4.52369 4.58606 4.63607 4.73012 4.81626 4.94991 4.97300 5.07708 5.09515 5.18186 5.22379 5.25696 5.27106 5.38246 5.38616 5.45526 5.47368 5.54828 5.60530 5.65352 5.69201 5.71438 5.77553 5.89816 5.98115 6.09474 6.19124 6.24322 6.27643 6.36456 6.47600 6.49417 6.61186 6.63093 6.71335 6.80702 7.24916 7.76187 7.91695 8.34786 8.36401 9.12350 9.84718 10.03811 11.33733 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.002263 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.626398 B =12371.795090 C =12888.231551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 H 0.074 0.926 4 C 0.178 3.822 5 H 0.078 0.922 6 N -0.738 5.738 7 C -0.247 4.247 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.879 3.121 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.158 4.158 16 C 0.102 3.898 17 N -0.612 5.612 18 C 0.526 3.474 19 O -0.536 6.536 20 C -0.095 4.095 21 C -0.090 4.090 22 C -0.072 4.072 23 C -0.146 4.146 24 C 0.127 3.873 25 C -0.160 4.160 26 C -0.069 4.069 27 C -0.077 4.077 28 C -0.159 4.159 29 C 0.060 3.940 30 O -0.318 6.318 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.365 0.635 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.106 0.894 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.417 8.065 -26.774 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.021 3.979 3 H 0.092 0.908 4 C 0.066 3.934 5 H 0.096 0.904 6 N -0.381 5.381 7 C -0.376 4.376 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.578 5.578 11 Si 0.709 3.291 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.200 4.200 16 C -0.021 4.021 17 N -0.347 5.347 18 C 0.315 3.685 19 O -0.413 6.413 20 C -0.135 4.135 21 C -0.091 4.091 22 C -0.090 4.090 23 C -0.164 4.164 24 C 0.082 3.918 25 C -0.161 4.161 26 C -0.087 4.087 27 C -0.114 4.114 28 C -0.197 4.197 29 C -0.015 4.015 30 O -0.233 6.233 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.200 0.800 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.124 0.876 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.934 8.509 -26.849 29.261 hybrid contribution -0.786 -0.576 -0.545 1.116 sum 7.148 7.933 -27.394 29.401 Atomic orbital electron populations 1.21977 0.94711 1.02217 1.02113 1.22003 0.95109 0.95974 0.84838 0.90820 1.21159 0.88616 0.91346 0.92272 0.90369 1.42878 1.33208 1.53048 1.08994 1.19057 1.12318 1.21646 0.84598 0.89004 1.24650 0.98743 0.99657 0.95714 1.69692 1.37403 1.37748 1.12911 0.86663 0.82529 0.79219 0.80698 1.21075 1.21632 1.20204 1.23493 0.99193 1.02607 0.94667 1.22333 0.94522 0.88659 0.96587 1.48720 1.52341 1.28661 1.04963 1.20126 0.80774 0.85470 0.82162 1.90697 1.39766 1.27711 1.83173 1.20605 1.02509 0.99910 0.90456 1.19150 0.95980 0.98680 0.95276 1.20774 0.95436 0.98926 0.93859 1.20515 1.00161 0.99522 0.96246 1.18638 0.92582 0.95045 0.85492 1.19696 0.96261 1.02555 0.97560 1.20674 0.99371 0.95027 0.93649 1.20454 0.98770 0.97653 0.94562 1.22228 0.96642 1.03627 0.97187 1.22950 0.92516 0.85193 1.00819 1.85984 1.64223 1.39732 1.33324 0.91244 0.92543 0.92367 0.79998 0.92974 0.91638 0.89062 0.91422 0.91364 0.88265 0.88134 0.85524 0.85298 0.86059 0.90459 0.90072 0.90467 0.89804 0.87642 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.48 37.16 0.32 -2.41 16 2 C 0.12 2.05 3.43 -66.95 -0.23 1.82 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.18 3.14 3.48 -66.10 -0.23 2.91 16 5 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 6 N -0.74 -16.18 4.35 -51.66 -0.22 -16.40 16 7 C -0.25 -6.53 10.44 -15.06 -0.16 -6.69 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.31 13.97 55.49 0.78 -27.54 16 11 Si 0.88 21.52 27.74 -169.99 -4.71 16.81 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.28 -6.43 6.44 56.52 0.36 -6.07 16 15 C -0.16 -2.33 6.77 -24.58 -0.17 -2.50 16 16 C 0.10 1.34 6.67 -2.53 -0.02 1.32 16 17 N -0.61 -9.08 3.07 -163.01 -0.50 -9.57 16 18 C 0.53 7.83 7.64 -10.99 -0.08 7.74 16 19 O -0.54 -9.84 15.08 5.55 0.08 -9.76 16 20 C -0.10 -1.04 4.84 -29.04 -0.14 -1.18 16 21 C -0.09 -1.08 4.37 -104.65 -0.46 -1.54 16 22 C -0.07 -0.85 9.70 -39.66 -0.38 -1.24 16 23 C -0.15 -1.73 9.94 -39.35 -0.39 -2.12 16 24 C 0.13 1.52 6.47 -39.20 -0.25 1.26 16 25 C -0.16 -1.76 5.75 -104.44 -0.60 -2.36 16 26 C -0.07 -0.78 9.32 -39.53 -0.37 -1.15 16 27 C -0.08 -0.61 5.86 -27.81 -0.16 -0.78 16 28 C -0.16 -1.02 6.19 -26.49 -0.16 -1.18 16 29 C 0.06 0.45 7.03 37.36 0.26 0.71 16 30 O -0.32 -3.50 10.27 -19.25 -0.20 -3.70 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.09 6.16 -51.93 -0.32 0.77 16 33 H 0.06 1.06 6.90 -51.93 -0.36 0.70 16 34 H 0.36 8.10 3.55 -40.82 -0.14 7.95 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.87 7.79 -51.93 -0.40 0.46 16 41 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 42 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 44 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -33.01 395.15 -10.12 -43.13 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.97 Total: 8.32 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.33 Total: -7.23 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.05 Total: -53.51 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.11 Total: -13.46 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.01 -10.12 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986401456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.231 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds