Wall clock time and date at job start Wed Apr 1 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.08995 * 110.72489 * 259.97246 * 4 2 1 6 6 N 1.46500 * 110.72001 * 23.24769 * 4 2 1 7 7 C 1.36938 * 120.00415 * 205.00045 * 6 4 2 8 8 H 1.07993 * 119.99642 * 359.97438 * 7 6 4 9 9 C 1.38803 * 120.00131 * 180.02562 * 7 6 4 10 10 N 1.31627 * 120.00090 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 120.00254 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46951 * 90.00264 * 11 9 7 13 13 H 1.48497 * 109.47173 * 210.00217 * 11 9 7 14 14 H 1.48497 * 109.47145 * 330.00476 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34777 * 125.64703 * 61.58893 * 17 2 1 19 19 O 1.21285 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99771 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.46945 * 180.02562 * 20 18 17 22 22 C 1.38297 * 120.00938 * 269.72767 * 21 20 18 23 23 C 1.37964 * 119.96050 * 179.81145 * 22 21 20 24 24 C 1.39142 * 120.21240 * 0.52820 * 23 22 21 25 25 C 1.38374 * 119.69797 * 359.56311 * 24 23 22 26 26 C 1.38102 * 120.00970 * 90.00306 * 21 20 18 27 27 C 1.50768 * 121.40308 * 180.55398 * 25 24 23 28 28 C 1.53070 * 109.68798 * 342.02278 * 27 25 24 29 29 C 1.53400 * 108.31920 * 48.18586 * 28 27 25 30 30 O 1.35844 * 118.50295 * 179.31052 * 24 23 22 31 31 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 32 32 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 33 33 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 34 34 H 0.97000 * 119.99753 * 24.99679 * 6 4 2 35 35 H 0.96994 * 120.00015 * 179.97438 * 10 9 7 36 36 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 37 37 H 1.08995 * 111.00914 * 206.38778 * 15 4 2 38 38 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 39 39 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 40 40 H 1.09001 * 109.47682 * 300.00397 * 20 18 17 41 41 H 1.09003 * 109.46941 * 60.00441 * 20 18 17 42 42 H 1.08009 * 120.01708 * 0.09607 * 22 21 20 43 43 H 1.08003 * 119.89588 * 180.27120 * 23 22 21 44 44 H 1.08005 * 119.84026 * 0.02562 * 26 21 20 45 45 H 1.09000 * 109.43625 * 102.08478 * 27 25 24 46 46 H 1.08995 * 109.43681 * 221.95320 * 27 25 24 47 47 H 1.09008 * 109.69200 * 288.47974 * 28 27 25 48 48 H 1.08998 * 109.72709 * 167.91850 * 28 27 25 49 49 H 1.09001 * 109.68121 * 175.61440 * 29 28 27 50 50 H 1.09000 * 109.68349 * 55.05793 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 2.3530 -0.0433 2.0201 6 7 1.0473 -1.6831 1.7497 7 6 1.0607 -2.0576 3.0668 8 1 1.8144 -1.6637 3.7324 9 6 0.1064 -2.9442 3.5461 10 7 0.1190 -3.3038 4.8122 11 14 -1.1970 -3.6261 2.3946 12 1 -0.7019 -4.8816 1.7748 13 1 -2.4367 -3.9082 3.1618 14 1 -1.4882 -2.6308 1.3317 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8072 -0.3655 -2.4653 19 8 1.1431 0.6172 -2.7189 20 6 2.3831 -1.1950 -3.5838 21 6 1.9908 -0.5934 -4.9086 22 6 0.8226 -0.9936 -5.5312 23 6 0.4624 -0.4393 -6.7422 24 6 1.2767 0.5141 -7.3457 25 6 2.4459 0.9112 -6.7213 26 6 2.8007 0.3536 -5.5041 27 6 3.3502 1.9501 -7.3346 28 6 3.0272 2.1009 -8.8232 29 6 1.5074 2.2435 -8.9747 30 8 0.8958 1.0265 -8.5447 31 1 -0.3633 0.4979 0.8990 32 1 -0.3633 -1.0275 -0.0183 33 1 -0.3634 0.5296 -0.8807 34 1 0.3705 -2.0371 1.1517 35 1 -0.5481 -3.9230 5.1472 36 1 4.1655 -0.8679 0.6615 37 1 3.4857 -2.4089 1.2832 38 1 3.6716 -2.0356 -1.3896 39 1 2.1903 -2.7735 -0.7093 40 1 3.4698 -1.2127 -3.5008 41 1 1.9971 -2.2122 -3.5178 42 1 0.1902 -1.7363 -5.0674 43 1 -0.4523 -0.7494 -7.2254 44 1 3.7150 0.6609 -5.0182 45 1 3.1984 2.9053 -6.8320 46 1 4.3889 1.6409 -7.2184 47 1 3.3692 1.2187 -9.3645 48 1 3.5208 2.9887 -9.2187 49 1 1.2585 2.4303 -10.0194 50 1 1.1530 3.0701 -8.3589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986401456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:18 Heat of formation + Delta-G solvation = -51.986338 kcal Electronic energy + Delta-G solvation = -30182.007036 eV Core-core repulsion = 26173.643348 eV Total energy + Delta-G solvation = -4008.363687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.73060 -41.20497 -39.29398 -38.24713 -35.81817 -35.24178 -33.82845 -33.15009 -32.19392 -31.41337 -31.05238 -28.52377 -26.85839 -26.42155 -25.14875 -24.41487 -23.73667 -23.14751 -21.32955 -20.50695 -19.89884 -19.65602 -18.73676 -18.04978 -17.70602 -17.48048 -16.72031 -16.43313 -16.10883 -15.84470 -15.73510 -15.37672 -15.17830 -14.96020 -14.91438 -14.73352 -14.39467 -14.30527 -14.15217 -14.01335 -13.87753 -13.39324 -13.30370 -13.18960 -12.98649 -12.87271 -12.60307 -12.47676 -12.38745 -12.33043 -12.23344 -11.95294 -11.87733 -11.72333 -11.65272 -11.53978 -11.35036 -10.97089 -10.77464 -9.72962 -9.61797 -9.30090 -9.01957 -8.00577 -5.32835 0.35939 0.39637 1.36596 1.38293 1.45100 1.68707 2.02328 2.37548 2.47719 2.77765 3.29222 3.54971 3.59705 3.64622 3.71494 3.78812 3.81738 3.86685 3.95770 4.08105 4.16815 4.23432 4.27638 4.32306 4.38539 4.42502 4.45648 4.55490 4.60319 4.64231 4.66235 4.72395 4.73447 4.78167 4.92175 4.94286 5.03852 5.04886 5.08352 5.16823 5.22845 5.25887 5.27100 5.39089 5.43137 5.46797 5.63372 5.81521 5.83473 6.23454 6.49577 6.63204 7.09015 7.22610 7.84970 8.02968 9.20666 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.002263 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.626398 B =12371.795090 C =12888.231551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.131 3.869 3 H 0.080 0.920 4 C 0.166 3.834 5 H 0.072 0.928 6 N -0.740 5.740 7 C -0.219 4.219 8 H 0.066 0.934 9 C -0.059 4.059 10 N -0.981 5.981 11 Si 0.941 3.059 12 H -0.276 1.276 13 H -0.301 1.301 14 H -0.260 1.260 15 C -0.148 4.148 16 C 0.104 3.896 17 N -0.612 5.612 18 C 0.525 3.475 19 O -0.576 6.576 20 C -0.086 4.086 21 C -0.104 4.104 22 C -0.085 4.085 23 C -0.164 4.164 24 C 0.112 3.888 25 C -0.168 4.168 26 C -0.078 4.078 27 C -0.080 4.080 28 C -0.153 4.153 29 C 0.050 3.950 30 O -0.336 6.336 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.365 0.635 35 H 0.256 0.744 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.130 0.870 41 H 0.119 0.881 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.110 0.890 49 H 0.129 0.871 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.193 8.413 -29.591 32.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 H 0.098 0.902 4 C 0.057 3.943 5 H 0.090 0.910 6 N -0.384 5.384 7 C -0.350 4.350 8 H 0.083 0.917 9 C -0.251 4.251 10 N -0.632 5.632 11 Si 0.770 3.230 12 H -0.203 1.203 13 H -0.228 1.228 14 H -0.185 1.185 15 C -0.188 4.188 16 C -0.018 4.018 17 N -0.346 5.346 18 C 0.315 3.685 19 O -0.456 6.456 20 C -0.125 4.125 21 C -0.105 4.105 22 C -0.103 4.103 23 C -0.182 4.182 24 C 0.067 3.933 25 C -0.169 4.169 26 C -0.096 4.096 27 C -0.117 4.117 28 C -0.191 4.191 29 C -0.025 4.025 30 O -0.250 6.250 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.201 0.799 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.129 0.871 49 H 0.147 0.853 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.755 8.877 -29.726 32.521 hybrid contribution -1.275 -0.536 0.293 1.414 sum 8.480 8.341 -29.433 31.745 Atomic orbital electron populations 1.21875 0.95980 1.00973 1.01433 1.21786 0.94004 0.96365 0.85210 0.90173 1.21376 0.89072 0.91074 0.92791 0.90970 1.42832 1.34492 1.53785 1.07285 1.19019 1.10333 1.19605 0.86033 0.91651 1.25339 1.01494 1.01160 0.97087 1.69855 1.38776 1.39497 1.15063 0.85637 0.79393 0.79025 0.78960 1.20255 1.22764 1.18496 1.23346 0.98382 1.01860 0.95254 1.22440 0.95613 0.87507 0.96218 1.48755 1.52361 1.28858 1.04579 1.20821 0.79949 0.85163 0.82551 1.90686 1.41569 1.29665 1.83685 1.20639 1.04148 0.99675 0.88044 1.19348 0.96139 0.99162 0.95803 1.20967 0.95898 0.99400 0.94067 1.20730 1.00714 1.00060 0.96717 1.18862 0.93105 0.95327 0.86018 1.20081 0.96343 1.02917 0.97576 1.20965 0.99971 0.94817 0.93852 1.20560 0.98898 0.96811 0.95392 1.22221 0.95898 1.04733 0.96211 1.23271 0.93308 0.83848 1.02050 1.85958 1.65017 1.41100 1.32958 0.92091 0.93907 0.92856 0.79925 0.93509 0.88931 0.90510 0.87077 0.91975 0.85191 0.86313 0.84834 0.84857 0.84432 0.90168 0.88588 0.90765 0.87132 0.85286 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.48 71.98 0.61 -4.46 16 2 C 0.13 4.09 3.43 45.34 0.16 4.25 16 3 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 4 C 0.17 5.66 3.48 46.18 0.16 5.82 16 5 H 0.07 2.54 8.09 -2.39 -0.02 2.53 16 6 N -0.74 -31.87 4.35 -317.35 -1.38 -33.26 16 7 C -0.22 -11.69 10.44 84.03 0.88 -10.81 16 8 H 0.07 3.79 8.06 -2.91 -0.02 3.77 16 9 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 10 N -0.98 -61.30 13.97 21.65 0.30 -60.99 16 11 Si 0.94 44.79 27.74 68.60 1.90 46.69 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 14 H -0.26 -11.48 6.44 99.48 0.64 -10.84 16 15 C -0.15 -3.93 6.77 31.99 0.22 -3.72 16 16 C 0.10 2.33 6.67 86.86 0.58 2.91 16 17 N -0.61 -16.36 3.07 -788.04 -2.42 -18.78 16 18 C 0.52 14.23 7.64 87.66 0.67 14.90 16 19 O -0.58 -20.37 15.08 -3.04 -0.05 -20.42 16 20 C -0.09 -1.59 4.84 29.10 0.14 -1.45 16 21 C -0.10 -2.28 4.37 -19.88 -0.09 -2.36 16 22 C -0.09 -1.96 9.70 22.22 0.22 -1.74 16 23 C -0.16 -3.86 9.94 22.42 0.22 -3.64 16 24 C 0.11 2.60 6.47 22.52 0.15 2.75 16 25 C -0.17 -3.46 5.75 -19.75 -0.11 -3.58 16 26 C -0.08 -1.61 9.32 22.30 0.21 -1.40 16 27 C -0.08 -1.09 5.86 29.89 0.18 -0.91 16 28 C -0.15 -1.59 6.19 30.75 0.19 -1.40 16 29 C 0.05 0.65 7.03 72.12 0.51 1.16 16 30 O -0.34 -7.17 10.27 -91.80 -0.94 -8.11 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.60 6.16 -2.39 -0.01 1.58 16 33 H 0.05 1.91 6.90 -2.38 -0.02 1.90 16 34 H 0.37 15.75 3.55 -92.71 -0.33 15.42 16 35 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.11 1.60 7.48 -2.39 -0.02 1.58 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.13 1.61 7.79 -2.39 -0.02 1.59 16 41 H 0.12 1.80 8.08 -2.39 -0.02 1.78 16 42 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -73.61 395.15 3.30 -70.31 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.54 Total: 31.15 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.34 Total: -6.59 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -3.49 Total: -113.03 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.99 Total: -28.53 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Total: -73.61 3.30 -70.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986401456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.322 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds