Wall clock time and date at job start Wed Apr 1 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.00087 * 2 1 4 4 C 1.54334 * 109.99559 * 238.96443 * 2 1 3 5 5 H 1.08996 * 110.85056 * 100.19290 * 4 2 1 6 6 N 1.46507 * 110.66582 * 337.04771 * 4 2 1 7 7 C 1.36930 * 120.00127 * 93.58744 * 6 4 2 8 8 H 1.08006 * 120.00314 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00404 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00743 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99787 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47268 * 89.99693 * 11 9 7 13 13 H 1.48501 * 109.47019 * 209.99865 * 11 9 7 14 14 H 1.48502 * 109.46959 * 329.99642 * 11 9 7 15 15 C 1.55154 * 103.02197 * 218.66586 * 4 2 1 16 16 C 1.54913 * 101.58262 * 35.30691 * 15 4 2 17 17 N 1.47019 * 109.88373 * 121.09721 * 2 1 3 18 18 C 1.34783 * 125.64852 * 298.39759 * 17 2 1 19 19 O 1.21582 * 119.99695 * 2.82750 * 18 17 2 20 20 C 1.47597 * 120.00159 * 182.82823 * 18 17 2 21 21 C 1.39748 * 120.26765 * 333.09338 * 20 18 17 22 22 C 1.37472 * 120.20309 * 180.10560 * 21 20 18 23 23 C 1.39585 * 120.42923 * 0.02562 * 22 21 20 24 24 C 1.39185 * 119.10273 * 0.32723 * 23 22 21 25 25 C 1.37302 * 120.94097 * 359.49791 * 24 23 22 26 26 C 1.51684 * 106.99631 * 179.03420 * 24 23 22 27 27 C 1.52999 * 110.94152 * 102.80258 * 26 24 23 28 28 C 1.52992 * 110.94433 * 226.49973 * 26 24 23 29 29 C 1.54701 * 101.90498 * 344.65061 * 26 24 23 30 30 O 1.35993 * 129.72477 * 180.58353 * 23 22 21 31 31 H 1.08991 * 109.47357 * 302.71245 * 1 2 3 32 32 H 1.09002 * 109.46999 * 62.71455 * 1 2 3 33 33 H 1.08997 * 109.46792 * 182.71351 * 1 2 3 34 34 H 0.97001 * 120.00252 * 273.59216 * 6 4 2 35 35 H 0.96991 * 120.00974 * 180.02562 * 10 9 7 36 36 H 1.08991 * 111.00811 * 277.23136 * 15 4 2 37 37 H 1.09010 * 111.00380 * 153.37417 * 15 4 2 38 38 H 1.08996 * 110.36467 * 204.15375 * 16 15 4 39 39 H 1.08998 * 110.46325 * 81.87284 * 16 15 4 40 40 H 1.08006 * 119.90241 * 0.09083 * 21 20 18 41 41 H 1.08004 * 119.78435 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.07278 * 180.36536 * 25 24 23 43 43 H 1.08995 * 109.47048 * 59.99635 * 27 26 24 44 44 H 1.08998 * 109.47243 * 180.02562 * 27 26 24 45 45 H 1.09000 * 109.47009 * 300.00112 * 27 26 24 46 46 H 1.09000 * 109.47372 * 59.99768 * 28 26 24 47 47 H 1.09005 * 109.47449 * 180.02562 * 28 26 24 48 48 H 1.09005 * 109.47117 * 299.99746 * 28 26 24 49 49 H 1.09003 * 110.74642 * 267.00631 * 29 26 24 50 50 H 1.09002 * 110.89860 * 143.73969 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7477 -1.2427 5 1 2.3598 -0.0449 -2.0191 6 7 1.0483 -1.6788 -1.7533 7 6 0.1893 -1.2821 -2.7431 8 1 0.2561 -0.2830 -3.1477 9 6 -0.7667 -2.1644 -3.2272 10 7 -1.5921 -1.7834 -4.1790 11 14 -0.8818 -3.8928 -2.5279 12 1 -1.8186 -3.8992 -1.3757 13 1 -1.3803 -4.8188 -3.5764 14 1 0.4620 -4.3343 -2.0757 15 6 3.2864 -1.5183 -0.6914 16 6 2.8099 -1.8825 0.7369 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3621 2.4657 19 8 1.0992 0.5930 2.7196 20 6 2.4232 -1.1361 3.5612 21 6 2.7449 -2.4836 3.3774 22 6 3.3165 -3.2038 4.3993 23 6 3.5806 -2.5986 5.6291 24 6 3.2512 -1.2583 5.8086 25 6 2.6832 -0.5288 4.7935 26 6 3.6293 -0.8956 7.2321 27 6 4.9349 -0.0986 7.2650 28 6 2.5012 -0.1219 7.9173 29 6 3.8156 -2.2890 7.8777 30 8 4.1428 -3.1208 6.7519 31 1 -0.3633 0.5553 0.8646 32 1 -0.3633 0.4711 -0.9133 33 1 -0.3633 -1.0265 0.0487 34 1 0.9885 -2.5763 -1.3901 35 1 -2.2604 -2.3997 -4.5170 36 1 4.1670 -0.8769 -0.6578 37 1 3.4807 -2.4156 -1.2791 38 1 3.6655 -2.0412 1.3932 39 1 2.1806 -2.7722 0.7133 40 1 2.5437 -2.9607 2.4295 41 1 3.5620 -4.2449 4.2500 42 1 2.4386 0.5119 4.9462 43 1 4.8147 0.8195 6.6899 44 1 5.1838 0.1485 8.2970 45 1 5.7365 -0.6965 6.8314 46 1 1.6009 -0.7359 7.9400 47 1 2.7977 0.1265 8.9365 48 1 2.3014 0.7956 7.3637 49 1 2.8911 -2.6231 8.3488 50 1 4.6325 -2.2771 8.5993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986548970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:10 Heat of formation + Delta-G solvation = -9.950146 kcal Electronic energy + Delta-G solvation = -30906.841008 eV Core-core repulsion = 26900.300147 eV Total energy + Delta-G solvation = -4006.540861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.75893 -40.16568 -37.92765 -36.94349 -35.55167 -34.17523 -31.82279 -31.00856 -30.72709 -30.24960 -28.91043 -27.79307 -26.94091 -25.57672 -24.20534 -23.30985 -22.84309 -21.95518 -20.40517 -19.97210 -18.74279 -17.90143 -17.66859 -17.00420 -16.55038 -16.23354 -15.93475 -15.29358 -14.71539 -14.53578 -14.38935 -14.06085 -13.94981 -13.88574 -13.80307 -13.63432 -13.32733 -13.25958 -13.03316 -12.70566 -12.67751 -12.44136 -12.17873 -12.01320 -11.84595 -11.79248 -11.62710 -11.35612 -11.10652 -10.98507 -10.96954 -10.80540 -10.68618 -10.47746 -10.23911 -10.10491 -9.67956 -9.55005 -9.19258 -9.00789 -8.48757 -8.27816 -7.36581 -5.82471 -3.19218 0.74789 1.07814 2.76067 2.98350 3.18366 3.31389 3.35231 3.41830 3.63508 3.86060 4.11959 4.43513 4.48098 4.53300 4.57503 4.70225 4.77242 4.96338 4.97761 4.99798 5.08588 5.13235 5.19350 5.24095 5.27322 5.35055 5.38255 5.41453 5.45611 5.51239 5.59016 5.71316 5.71988 5.78939 5.81823 5.92494 5.96735 6.09123 6.09802 6.13810 6.14459 6.22848 6.35094 6.42946 6.54302 6.79576 6.83642 6.99701 7.26974 7.79397 7.91471 8.35534 8.39349 9.12390 9.84723 10.03060 11.35369 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002687 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.458974 B =10416.743044 C =10855.332241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.110 3.890 3 H 0.065 0.935 4 C 0.176 3.824 5 H 0.083 0.917 6 N -0.734 5.734 7 C -0.243 4.243 8 H 0.093 0.907 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.880 3.120 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 C -0.148 4.148 16 C 0.092 3.908 17 N -0.600 5.600 18 C 0.573 3.427 19 O -0.540 6.540 20 C -0.152 4.152 21 C -0.063 4.063 22 C -0.146 4.146 23 C 0.126 3.874 24 C -0.175 4.175 25 C -0.010 4.010 26 C -0.051 4.051 27 C -0.135 4.135 28 C -0.138 4.138 29 C 0.057 3.943 30 O -0.301 6.301 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.099 -0.634 23.931 28.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.005 3.995 3 H 0.083 0.917 4 C 0.064 3.936 5 H 0.101 0.899 6 N -0.375 5.375 7 C -0.373 4.373 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.711 3.289 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.204 1.204 15 C -0.187 4.187 16 C -0.031 4.031 17 N -0.333 5.333 18 C 0.362 3.638 19 O -0.419 6.419 20 C -0.155 4.155 21 C -0.082 4.082 22 C -0.164 4.164 23 C 0.080 3.920 24 C -0.176 4.176 25 C -0.029 4.029 26 C -0.051 4.051 27 C -0.192 4.192 28 C -0.195 4.195 29 C -0.018 4.018 30 O -0.215 6.215 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.195 0.805 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.694 -0.178 23.946 28.096 hybrid contribution -0.302 -1.316 0.546 1.457 sum 14.392 -1.494 24.493 28.447 Atomic orbital electron populations 1.21796 0.93434 1.02566 1.01437 1.22718 0.96384 0.95596 0.84816 0.91682 1.21224 0.87744 0.92045 0.92548 0.89901 1.42694 1.38369 1.11933 1.44494 1.19007 1.08393 0.99562 1.10297 0.88967 1.24643 0.98068 0.97670 0.98354 1.69682 1.22176 1.35584 1.30263 0.86628 0.77553 0.86210 0.78552 1.21093 1.21756 1.20359 1.23198 0.98845 1.01939 0.94719 1.22658 0.94964 0.89014 0.96463 1.48521 1.51667 1.28039 1.05059 1.17716 0.80889 0.83919 0.81306 1.90762 1.38558 1.29347 1.83237 1.19798 1.05881 0.94876 0.94955 1.21656 0.94309 0.93165 0.99026 1.20197 1.04678 1.00789 0.90763 1.19819 0.92250 0.91335 0.88606 1.20555 1.06272 0.94041 0.96687 1.20235 0.93071 0.99922 0.89628 1.20791 0.97381 0.95958 0.91012 1.21794 0.95054 1.00104 1.02269 1.21790 0.96908 1.00548 1.00230 1.24034 1.02275 0.87535 0.87927 1.86790 1.68700 1.50903 1.15066 0.93798 0.90755 0.92264 0.80548 0.92984 0.90412 0.89465 0.90424 0.91319 0.83297 0.84846 0.84869 0.91641 0.91742 0.92071 0.91974 0.91794 0.91475 0.90251 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.01 37.16 0.30 -2.43 16 2 C 0.11 1.94 3.45 -66.95 -0.23 1.71 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.18 3.06 3.52 -66.09 -0.23 2.83 16 5 H 0.08 1.45 8.07 -51.93 -0.42 1.04 16 6 N -0.73 -15.69 3.69 -51.65 -0.19 -15.88 16 7 C -0.24 -6.33 8.85 -15.06 -0.13 -6.47 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.26 13.97 55.49 0.78 -27.48 16 11 Si 0.88 21.27 27.74 -169.99 -4.71 16.56 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.17 6.52 56.52 0.37 -5.81 16 15 C -0.15 -1.97 6.68 -24.58 -0.16 -2.13 16 16 C 0.09 1.19 4.97 -2.53 -0.01 1.17 16 17 N -0.60 -9.51 3.06 -164.21 -0.50 -10.01 16 18 C 0.57 9.56 7.46 -12.44 -0.09 9.46 16 19 O -0.54 -10.75 15.63 5.29 0.08 -10.66 16 20 C -0.15 -2.08 5.70 -104.92 -0.60 -2.68 16 21 C -0.06 -0.74 7.92 -39.30 -0.31 -1.05 16 22 C -0.15 -1.57 10.05 -39.36 -0.40 -1.97 16 23 C 0.13 1.41 7.04 -38.73 -0.27 1.14 16 24 C -0.17 -1.89 5.04 -104.13 -0.52 -2.41 16 25 C -0.01 -0.12 9.46 -39.33 -0.37 -0.49 16 26 C -0.05 -0.40 1.03 -154.28 -0.16 -0.56 16 27 C -0.14 -0.92 8.61 37.16 0.32 -0.60 16 28 C -0.14 -0.94 8.55 37.15 0.32 -0.62 16 29 C 0.06 0.42 7.08 38.05 0.27 0.69 16 30 O -0.30 -3.14 11.09 -19.72 -0.22 -3.36 16 31 H 0.04 0.90 6.87 -51.93 -0.36 0.55 16 32 H 0.07 1.62 7.26 -51.93 -0.38 1.25 16 33 H 0.06 1.30 7.47 -51.93 -0.39 0.91 16 34 H 0.36 7.69 5.70 -40.82 -0.23 7.45 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.08 0.83 6.19 -51.93 -0.32 0.50 16 39 H 0.07 0.89 7.26 -51.93 -0.38 0.51 16 40 H 0.15 1.59 4.54 -52.48 -0.24 1.35 16 41 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.13 1.64 7.88 -52.49 -0.41 1.23 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.50 7.86 -51.93 -0.41 0.09 16 50 H 0.11 0.53 7.93 -51.93 -0.41 0.12 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -32.35 389.52 -9.05 -41.39 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.76 Total: 7.85 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.39 Total: -4.28 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.08 Total: -53.37 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.14 Total: -14.03 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.35 -9.05 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986548970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.444 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds