Wall clock time and date at job start Wed Apr 1 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.00087 * 2 1 4 4 C 1.54334 * 109.99559 * 238.96443 * 2 1 3 5 5 H 1.08996 * 110.85056 * 100.19290 * 4 2 1 6 6 N 1.46507 * 110.66582 * 337.04771 * 4 2 1 7 7 C 1.36930 * 120.00127 * 93.58744 * 6 4 2 8 8 H 1.08006 * 120.00314 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00404 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00743 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99787 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47268 * 89.99693 * 11 9 7 13 13 H 1.48501 * 109.47019 * 209.99865 * 11 9 7 14 14 H 1.48502 * 109.46959 * 329.99642 * 11 9 7 15 15 C 1.55154 * 103.02197 * 218.66586 * 4 2 1 16 16 C 1.54913 * 101.58262 * 35.30691 * 15 4 2 17 17 N 1.47019 * 109.88373 * 121.09721 * 2 1 3 18 18 C 1.34783 * 125.64852 * 298.39759 * 17 2 1 19 19 O 1.21582 * 119.99695 * 2.82750 * 18 17 2 20 20 C 1.47597 * 120.00159 * 182.82823 * 18 17 2 21 21 C 1.39748 * 120.26765 * 333.09338 * 20 18 17 22 22 C 1.37472 * 120.20309 * 180.10560 * 21 20 18 23 23 C 1.39585 * 120.42923 * 0.02562 * 22 21 20 24 24 C 1.39185 * 119.10273 * 0.32723 * 23 22 21 25 25 C 1.37302 * 120.94097 * 359.49791 * 24 23 22 26 26 C 1.51684 * 106.99631 * 179.03420 * 24 23 22 27 27 C 1.52999 * 110.94152 * 102.80258 * 26 24 23 28 28 C 1.52992 * 110.94433 * 226.49973 * 26 24 23 29 29 C 1.54701 * 101.90498 * 344.65061 * 26 24 23 30 30 O 1.35993 * 129.72477 * 180.58353 * 23 22 21 31 31 H 1.08991 * 109.47357 * 302.71245 * 1 2 3 32 32 H 1.09002 * 109.46999 * 62.71455 * 1 2 3 33 33 H 1.08997 * 109.46792 * 182.71351 * 1 2 3 34 34 H 0.97001 * 120.00252 * 273.59216 * 6 4 2 35 35 H 0.96991 * 120.00974 * 180.02562 * 10 9 7 36 36 H 1.08991 * 111.00811 * 277.23136 * 15 4 2 37 37 H 1.09010 * 111.00380 * 153.37417 * 15 4 2 38 38 H 1.08996 * 110.36467 * 204.15375 * 16 15 4 39 39 H 1.08998 * 110.46325 * 81.87284 * 16 15 4 40 40 H 1.08006 * 119.90241 * 0.09083 * 21 20 18 41 41 H 1.08004 * 119.78435 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.07278 * 180.36536 * 25 24 23 43 43 H 1.08995 * 109.47048 * 59.99635 * 27 26 24 44 44 H 1.08998 * 109.47243 * 180.02562 * 27 26 24 45 45 H 1.09000 * 109.47009 * 300.00112 * 27 26 24 46 46 H 1.09000 * 109.47372 * 59.99768 * 28 26 24 47 47 H 1.09005 * 109.47449 * 180.02562 * 28 26 24 48 48 H 1.09005 * 109.47117 * 299.99746 * 28 26 24 49 49 H 1.09003 * 110.74642 * 267.00631 * 29 26 24 50 50 H 1.09002 * 110.89860 * 143.73969 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7477 -1.2427 5 1 2.3598 -0.0449 -2.0191 6 7 1.0483 -1.6788 -1.7533 7 6 0.1893 -1.2821 -2.7431 8 1 0.2561 -0.2830 -3.1477 9 6 -0.7667 -2.1644 -3.2272 10 7 -1.5921 -1.7834 -4.1790 11 14 -0.8818 -3.8928 -2.5279 12 1 -1.8186 -3.8992 -1.3757 13 1 -1.3803 -4.8188 -3.5764 14 1 0.4620 -4.3343 -2.0757 15 6 3.2864 -1.5183 -0.6914 16 6 2.8099 -1.8825 0.7369 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3621 2.4657 19 8 1.0992 0.5930 2.7196 20 6 2.4232 -1.1361 3.5612 21 6 2.7449 -2.4836 3.3774 22 6 3.3165 -3.2038 4.3993 23 6 3.5806 -2.5986 5.6291 24 6 3.2512 -1.2583 5.8086 25 6 2.6832 -0.5288 4.7935 26 6 3.6293 -0.8956 7.2321 27 6 4.9349 -0.0986 7.2650 28 6 2.5012 -0.1219 7.9173 29 6 3.8156 -2.2890 7.8777 30 8 4.1428 -3.1208 6.7519 31 1 -0.3633 0.5553 0.8646 32 1 -0.3633 0.4711 -0.9133 33 1 -0.3633 -1.0265 0.0487 34 1 0.9885 -2.5763 -1.3901 35 1 -2.2604 -2.3997 -4.5170 36 1 4.1670 -0.8769 -0.6578 37 1 3.4807 -2.4156 -1.2791 38 1 3.6655 -2.0412 1.3932 39 1 2.1806 -2.7722 0.7133 40 1 2.5437 -2.9607 2.4295 41 1 3.5620 -4.2449 4.2500 42 1 2.4386 0.5119 4.9462 43 1 4.8147 0.8195 6.6899 44 1 5.1838 0.1485 8.2970 45 1 5.7365 -0.6965 6.8314 46 1 1.6009 -0.7359 7.9400 47 1 2.7977 0.1265 8.9365 48 1 2.3014 0.7956 7.3637 49 1 2.8911 -2.6231 8.3488 50 1 4.6325 -2.2771 8.5993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986548970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:09 Heat of formation + Delta-G solvation = -29.580581 kcal Electronic energy + Delta-G solvation = -30907.692248 eV Core-core repulsion = 26900.300147 eV Total energy + Delta-G solvation = -4007.392101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.53273 -41.39881 -39.16560 -38.02951 -36.22602 -35.85529 -33.58633 -32.37298 -31.72544 -31.46241 -30.22313 -28.31212 -27.54234 -27.04082 -25.38837 -24.85098 -24.00276 -23.00880 -21.60212 -20.92136 -19.96132 -19.72284 -18.67708 -17.92609 -17.59606 -17.30305 -16.80228 -16.53740 -16.25941 -15.74695 -15.33433 -15.28764 -15.21498 -15.08820 -14.75663 -14.66488 -14.55322 -14.29691 -13.99112 -13.86490 -13.76398 -13.52886 -13.49813 -13.12345 -12.94978 -12.87583 -12.78215 -12.44019 -12.40996 -12.32981 -12.01117 -11.94458 -11.89937 -11.78364 -11.67346 -11.54758 -11.49537 -11.03485 -10.90087 -10.05448 -9.69824 -9.31442 -9.23852 -7.97254 -5.30535 -0.19742 0.22547 1.37970 1.42747 1.49305 1.69852 1.94330 2.22281 2.51649 2.66406 3.20638 3.31013 3.41106 3.54750 3.57590 3.63512 3.74506 3.90135 3.94419 4.04466 4.14473 4.20534 4.28484 4.36207 4.40726 4.48901 4.52249 4.53481 4.58642 4.68562 4.71281 4.75629 4.80409 4.88005 4.89971 4.96748 5.02695 5.06419 5.10703 5.16962 5.20537 5.21914 5.25121 5.27835 5.31272 5.38566 5.48248 5.50425 5.83451 6.05190 6.25497 6.54474 7.10427 7.12657 7.85854 8.04989 9.24074 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002687 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.458974 B =10416.743044 C =10855.332241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.115 3.885 3 H 0.066 0.934 4 C 0.168 3.832 5 H 0.079 0.921 6 N -0.733 5.733 7 C -0.212 4.212 8 H 0.060 0.940 9 C -0.064 4.064 10 N -0.985 5.985 11 Si 0.944 3.056 12 H -0.290 1.290 13 H -0.301 1.301 14 H -0.239 1.239 15 C -0.132 4.132 16 C 0.088 3.912 17 N -0.600 5.600 18 C 0.568 3.432 19 O -0.585 6.585 20 C -0.171 4.171 21 C -0.059 4.059 22 C -0.144 4.144 23 C 0.123 3.877 24 C -0.177 4.177 25 C -0.019 4.019 26 C -0.052 4.052 27 C -0.132 4.132 28 C -0.136 4.136 29 C 0.053 3.947 30 O -0.310 6.310 31 H 0.033 0.967 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.366 0.634 35 H 0.255 0.745 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.087 0.913 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.208 -2.876 26.888 32.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 H 0.084 0.916 4 C 0.058 3.942 5 H 0.097 0.903 6 N -0.375 5.375 7 C -0.344 4.344 8 H 0.078 0.922 9 C -0.255 4.255 10 N -0.636 5.636 11 Si 0.772 3.228 12 H -0.217 1.217 13 H -0.229 1.229 14 H -0.163 1.163 15 C -0.170 4.170 16 C -0.033 4.033 17 N -0.332 5.332 18 C 0.360 3.640 19 O -0.467 6.467 20 C -0.174 4.174 21 C -0.077 4.077 22 C -0.163 4.163 23 C 0.076 3.924 24 C -0.178 4.178 25 C -0.038 4.038 26 C -0.052 4.052 27 C -0.190 4.190 28 C -0.193 4.193 29 C -0.021 4.021 30 O -0.223 6.223 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.200 0.800 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.142 0.858 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.108 0.892 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.889 -2.433 26.950 32.438 hybrid contribution -1.218 -0.488 -0.253 1.336 sum 16.671 -2.921 26.697 31.610 Atomic orbital electron populations 1.21612 0.95893 1.00783 0.99623 1.22448 0.94215 0.96237 0.86160 0.91574 1.21417 0.88585 0.92079 0.92126 0.90253 1.42617 1.38538 1.12780 1.43526 1.18919 1.07943 0.97813 1.09678 0.92203 1.25399 0.98452 1.02147 0.99466 1.69868 1.23741 1.37067 1.32907 0.85573 0.79087 0.81029 0.77100 1.21726 1.22866 1.16314 1.23157 0.97268 1.02245 0.94361 1.22925 0.95791 0.87840 0.96778 1.48527 1.51639 1.28688 1.04308 1.18238 0.80255 0.83551 0.82000 1.90731 1.40580 1.31443 1.83937 1.19608 1.07692 0.95729 0.94366 1.21722 0.93986 0.92097 0.99889 1.20445 1.03824 1.01769 0.90243 1.20061 0.91691 0.91450 0.89160 1.20826 1.05227 0.94051 0.97708 1.20208 0.93810 0.99784 0.89970 1.20911 0.98108 0.96839 0.89320 1.21790 0.94151 0.99379 1.03638 1.21788 0.96398 0.99795 1.01340 1.24324 1.04024 0.86349 0.87362 1.86783 1.68523 1.51591 1.15443 0.94767 0.93259 0.93939 0.79981 0.93653 0.87807 0.88102 0.87236 0.90652 0.82076 0.82512 0.85846 0.92482 0.89353 0.92685 0.92573 0.89410 0.92529 0.89212 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 8.01 71.98 0.58 -4.52 16 2 C 0.12 4.04 3.45 45.34 0.16 4.20 16 3 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.17 5.61 3.52 46.18 0.16 5.77 16 5 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 6 N -0.73 -30.60 3.69 -317.31 -1.17 -31.77 16 7 C -0.21 -11.28 8.85 84.03 0.74 -10.53 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 10 N -0.98 -62.15 13.97 21.65 0.30 -61.85 16 11 Si 0.94 43.92 27.74 68.60 1.90 45.82 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 13 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 14 H -0.24 -9.50 6.52 99.48 0.65 -8.86 16 15 C -0.13 -3.01 6.68 31.99 0.21 -2.79 16 16 C 0.09 1.97 4.97 86.86 0.43 2.40 16 17 N -0.60 -18.23 3.06 -791.69 -2.43 -20.66 16 18 C 0.57 18.84 7.46 86.71 0.65 19.48 16 19 O -0.58 -23.98 15.63 -3.98 -0.06 -24.05 16 20 C -0.17 -4.49 5.70 -20.06 -0.11 -4.61 16 21 C -0.06 -1.22 7.92 22.45 0.18 -1.04 16 22 C -0.14 -2.66 10.05 22.41 0.23 -2.43 16 23 C 0.12 2.43 7.04 22.82 0.16 2.59 16 24 C -0.18 -3.54 5.04 -19.54 -0.10 -3.64 16 25 C -0.02 -0.46 9.46 22.43 0.21 -0.24 16 26 C -0.05 -0.69 1.03 -52.04 -0.05 -0.75 16 27 C -0.13 -1.48 8.61 71.98 0.62 -0.86 16 28 C -0.14 -1.60 8.55 71.98 0.62 -0.98 16 29 C 0.05 0.60 7.08 72.56 0.51 1.11 16 30 O -0.31 -5.50 11.09 -93.47 -1.04 -6.54 16 31 H 0.03 1.47 6.87 -2.39 -0.02 1.45 16 32 H 0.05 2.27 7.26 -2.39 -0.02 2.25 16 33 H 0.04 1.89 7.47 -2.39 -0.02 1.87 16 34 H 0.37 14.67 5.70 -92.71 -0.53 14.14 16 35 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.11 1.83 6.19 -2.39 -0.01 1.82 16 39 H 0.08 1.64 7.26 -2.39 -0.02 1.62 16 40 H 0.16 2.86 4.54 -2.91 -0.01 2.84 16 41 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.12 3.16 7.88 -2.91 -0.02 3.14 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 0.72 8.07 -2.39 -0.02 0.70 16 47 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 48 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.09 0.84 7.86 -2.39 -0.02 0.82 16 50 H 0.13 0.77 7.93 -2.39 -0.02 0.75 16 Total: -1.00 -74.17 389.52 3.53 -70.64 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.36 Total: 28.41 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.66 Total: 0.00 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.29 Total: -114.28 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.10 Total: -30.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.90 Total: 45.82 kcal Total: -74.17 3.53 -70.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986548970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.056 kcal (2) G-P(sol) polarization free energy of solvation -74.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds