Wall clock time and date at job start Wed Apr 1 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35705 * 116.99932 * 2 1 4 4 C 1.39019 * 119.91273 * 359.72801 * 3 2 1 5 5 C 1.37686 * 120.08943 * 179.76342 * 4 3 2 6 6 C 1.39747 * 119.90896 * 0.48487 * 5 4 3 7 7 C 1.47600 * 120.08601 * 179.74508 * 6 5 4 8 8 O 1.21592 * 120.00325 * 184.24419 * 7 6 5 9 9 N 1.34777 * 120.00343 * 4.24086 * 7 6 5 10 10 C 1.47424 * 125.65467 * 183.18210 * 9 7 6 11 11 C 1.54907 * 104.83376 * 155.83413 * 10 9 7 12 12 C 1.55151 * 101.58186 * 37.00845 * 11 10 9 13 13 H 1.09002 * 110.71802 * 82.86618 * 12 11 10 14 14 N 1.46500 * 110.71899 * 205.95616 * 12 11 10 15 15 C 1.36940 * 120.00208 * 273.54411 * 14 12 11 16 16 H 1.08005 * 119.99861 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00259 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99639 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47158 * 60.00502 * 19 17 15 21 21 H 1.48501 * 109.47094 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47454 * 300.00255 * 19 17 15 23 23 C 1.47028 * 125.64351 * 2.87136 * 9 7 6 24 24 H 1.08996 * 109.88111 * 300.51158 * 23 9 7 25 25 C 1.52993 * 109.88272 * 61.67952 * 23 9 7 26 26 C 1.39712 * 119.82795 * 359.77062 * 6 5 4 27 27 C 1.37717 * 119.91036 * 359.97438 * 26 6 5 28 28 C 1.50701 * 119.95847 * 180.02562 * 27 26 6 29 29 C 1.53002 * 117.49682 * 8.72880 * 28 27 26 30 30 C 1.52995 * 117.49937 * 300.07195 * 28 27 26 31 31 H 1.09003 * 109.47555 * 299.99518 * 1 2 3 32 32 H 1.09006 * 109.47041 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47372 * 60.00247 * 1 2 3 34 34 H 1.08000 * 119.95475 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.04219 * 180.25492 * 5 4 3 36 36 H 1.08999 * 110.36582 * 274.67155 * 10 9 7 37 37 H 1.09002 * 110.36602 * 36.88172 * 10 9 7 38 38 H 1.09005 * 111.00634 * 155.08456 * 11 10 9 39 39 H 1.09002 * 111.00505 * 278.93037 * 11 10 9 40 40 H 0.96999 * 120.00140 * 93.54794 * 14 12 11 41 41 H 0.97007 * 119.99659 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.47592 * 76.08878 * 25 23 9 43 43 H 1.09002 * 109.47175 * 196.08868 * 25 23 9 44 44 H 1.09002 * 109.47504 * 316.09308 * 25 23 9 45 45 H 1.08000 * 120.04608 * 180.02562 * 26 6 5 46 46 H 1.09002 * 115.55131 * 154.39391 * 28 27 26 47 47 H 1.09006 * 117.49866 * 359.97438 * 29 28 27 48 48 H 1.09003 * 117.50245 * 145.01482 * 29 28 27 49 49 H 1.09005 * 117.50031 * 214.97666 * 30 28 27 50 50 H 1.08997 * 117.50128 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2861 2.3739 -0.0057 5 6 1.9073 3.6026 -0.0008 6 6 3.3028 3.6779 -0.0003 7 6 3.9728 4.9930 -0.0008 8 8 5.1845 5.0580 -0.0783 9 7 3.2416 6.1220 0.0847 10 6 3.7727 7.4961 0.0286 11 6 2.5817 8.3623 -0.4518 12 6 1.3893 7.6793 0.2686 13 1 1.2995 8.0407 1.2930 14 7 0.1427 7.9012 -0.4684 15 6 -0.5946 9.0327 -0.2419 16 1 -0.2568 9.7618 0.4798 17 6 -1.7754 9.2431 -0.9405 18 7 -2.1868 8.3547 -1.8203 19 14 -2.7808 10.7870 -0.6320 20 1 -1.9596 11.9836 -0.9470 21 1 -3.9878 10.7728 -1.4970 22 1 -3.1944 10.8318 0.7934 23 6 1.7813 6.1871 0.2428 24 1 1.2951 5.6886 -0.5958 25 6 1.3701 5.5210 1.5573 26 6 4.0620 2.5050 0.0000 27 6 3.4330 1.2799 0.0004 28 6 4.2509 0.0141 0.0014 29 6 5.7609 0.1489 0.2079 30 6 5.2059 -0.2108 -1.1725 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 -0.8900 34 1 0.2077 2.3149 -0.0097 35 1 1.3170 4.5069 -0.0011 36 1 4.1004 7.8167 1.0175 37 1 4.5977 7.5553 -0.6813 38 1 2.6944 9.3965 -0.1263 39 1 2.4688 8.3053 -1.5344 40 1 -0.1605 7.2465 -1.1167 41 1 -3.0118 8.5020 -2.3088 42 1 1.5993 6.1868 2.3893 43 1 0.2998 5.3151 1.5410 44 1 1.9181 4.5866 1.6782 45 1 5.1406 2.5591 0.0008 46 1 3.7610 -0.8619 0.4267 47 1 6.1628 1.1531 0.3426 48 1 6.2645 -0.6385 0.7687 49 1 5.3446 -1.2349 -1.5195 50 1 5.2423 0.5565 -1.9458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987281693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:31 Heat of formation + Delta-G solvation = 37.039857 kcal Electronic energy + Delta-G solvation = -30766.459925 eV Core-core repulsion = 26761.956703 eV Total energy + Delta-G solvation = -4004.503222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06587 -39.88296 -38.08741 -37.47625 -36.54114 -34.19514 -32.44800 -31.53531 -30.54675 -30.01458 -29.08601 -27.47497 -25.45523 -24.12273 -23.75066 -23.20360 -22.56475 -21.63165 -20.80300 -20.36448 -19.19038 -18.19644 -17.45570 -16.94077 -16.71846 -15.99407 -15.80048 -15.45431 -15.23914 -14.86346 -14.52791 -14.48199 -14.14463 -13.90109 -13.53232 -13.46507 -13.16689 -13.06743 -12.66999 -12.59981 -12.24984 -12.18783 -11.93768 -11.83618 -11.63867 -11.56501 -11.29558 -11.18419 -11.13598 -10.91794 -10.87114 -10.71682 -10.57484 -10.44922 -10.26846 -10.09795 -9.84602 -9.66829 -9.01833 -8.88063 -8.47097 -8.13094 -7.12033 -5.89532 -3.20173 0.89434 1.21108 2.88072 3.04145 3.13223 3.36866 3.42275 3.42551 3.63245 3.96835 4.33938 4.45208 4.57068 4.62710 4.73944 4.85154 4.87674 4.90515 4.96534 5.01461 5.08759 5.16096 5.20064 5.28676 5.31371 5.39993 5.43038 5.46993 5.52548 5.58934 5.65173 5.68921 5.79426 5.85642 5.89440 5.93963 5.97431 6.10842 6.17540 6.21556 6.22231 6.24055 6.33504 6.39364 6.49157 6.56137 6.62888 6.85433 7.16594 7.58798 7.71346 8.27549 8.33116 9.39527 9.91750 10.26641 11.32498 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.002901 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.300671 B = 9649.802335 C =11206.502468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.159 3.841 4 C -0.220 4.220 5 C -0.078 4.078 6 C -0.171 4.171 7 C 0.578 3.422 8 O -0.552 6.552 9 N -0.603 5.603 10 C 0.107 3.893 11 C -0.156 4.156 12 C 0.178 3.822 13 H 0.068 0.932 14 N -0.715 5.715 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.106 3.894 24 H 0.092 0.908 25 C -0.175 4.175 26 C -0.024 4.024 27 C -0.104 4.104 28 C -0.102 4.102 29 C -0.180 4.180 30 C -0.171 4.171 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.136 0.864 35 H 0.179 0.821 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.385 0.615 41 H 0.257 0.743 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.141 0.859 46 H 0.115 0.885 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.055 -16.712 4.831 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.113 3.887 4 C -0.238 4.238 5 C -0.095 4.095 6 C -0.175 4.175 7 C 0.368 3.632 8 O -0.432 6.432 9 N -0.335 5.335 10 C -0.015 4.015 11 C -0.197 4.197 12 C 0.066 3.934 13 H 0.086 0.914 14 N -0.356 5.356 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.002 3.998 24 H 0.109 0.891 25 C -0.233 4.233 26 C -0.042 4.042 27 C -0.104 4.104 28 C -0.120 4.120 29 C -0.217 4.217 30 C -0.208 4.208 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.195 0.805 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.219 0.781 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.158 0.842 46 H 0.133 0.867 47 H 0.118 0.882 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.693 -16.775 4.835 19.968 hybrid contribution -1.091 0.776 -0.142 1.347 sum 8.601 -15.998 4.693 18.761 Atomic orbital electron populations 1.23131 0.78071 1.04023 1.01917 1.86011 1.21577 1.26893 1.87925 1.19052 0.91464 0.84341 0.93837 1.21245 1.00459 0.91802 1.10331 1.23095 0.94627 1.00317 0.91496 1.19699 0.93650 0.93149 1.10964 1.17779 0.86067 0.83052 0.76270 1.90736 1.13467 1.87148 1.51841 1.48391 1.07962 1.05926 1.71266 1.22277 0.97656 0.80576 1.01010 1.23593 0.95060 0.99056 1.02041 1.21295 0.87143 0.88886 0.96064 0.91392 1.42320 1.21449 1.24724 1.47081 1.19143 1.01825 0.97603 1.18963 0.90990 1.24750 0.98278 0.98515 0.98946 1.69646 1.24113 1.35561 1.28496 0.86257 0.79631 0.82773 0.77428 1.21156 1.21671 1.21170 1.22342 0.80047 0.99603 0.97782 0.89098 1.22703 1.02551 1.01046 0.96993 1.20920 1.00475 0.89504 0.93336 1.18304 0.89859 0.93973 1.08305 1.20742 0.90670 0.96637 1.03916 1.23121 0.95347 1.03355 0.99885 1.23042 1.03259 1.02702 0.91794 0.92312 0.88196 0.92195 0.84632 0.80460 0.91767 0.90962 0.90378 0.90584 0.78087 0.93293 0.91803 0.90462 0.91335 0.84191 0.86669 0.88194 0.88471 0.88584 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.40 9.65 -18.82 -0.18 -3.58 16 3 C 0.16 1.96 6.67 -39.02 -0.26 1.70 16 4 C -0.22 -2.67 9.01 -39.49 -0.36 -3.02 16 5 C -0.08 -1.06 6.44 -39.22 -0.25 -1.31 16 6 C -0.17 -2.55 5.33 -104.96 -0.56 -3.11 16 7 C 0.58 9.74 7.57 -12.44 -0.09 9.65 16 8 O -0.55 -10.63 16.63 5.29 0.09 -10.54 16 9 N -0.60 -9.58 3.07 -168.46 -0.52 -10.10 16 10 C 0.11 1.63 6.90 -2.53 -0.02 1.62 16 11 C -0.16 -2.58 6.76 -24.59 -0.17 -2.75 16 12 C 0.18 3.17 3.10 -66.10 -0.21 2.97 16 13 H 0.07 1.22 7.56 -51.93 -0.39 0.82 16 14 N -0.72 -16.15 5.25 -51.66 -0.27 -16.42 16 15 C -0.24 -6.25 9.98 -15.06 -0.15 -6.40 16 16 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -26.41 13.06 55.49 0.72 -25.69 16 19 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.11 1.64 2.45 -66.96 -0.16 1.48 16 24 H 0.09 1.46 5.67 -51.93 -0.29 1.17 16 25 C -0.18 -2.39 7.78 37.15 0.29 -2.10 16 26 C -0.02 -0.32 8.83 -39.22 -0.35 -0.67 16 27 C -0.10 -1.30 5.62 -104.54 -0.59 -1.89 16 28 C -0.10 -1.07 5.74 -91.77 -0.53 -1.60 16 29 C -0.18 -1.67 9.86 -26.70 -0.26 -1.93 16 30 C -0.17 -1.61 10.16 -26.70 -0.27 -1.88 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.43 7.64 -51.93 -0.40 0.03 16 34 H 0.14 1.38 6.28 -52.49 -0.33 1.05 16 35 H 0.18 2.43 2.02 -58.21 -0.12 2.31 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.10 8.07 -51.93 -0.42 0.69 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.38 9.25 7.51 -40.82 -0.31 8.94 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.06 0.85 7.71 -51.93 -0.40 0.45 16 43 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 44 H 0.07 0.91 4.76 -51.93 -0.25 0.66 16 45 H 0.14 1.89 5.60 -52.49 -0.29 1.59 16 46 H 0.12 1.17 7.76 -51.93 -0.40 0.76 16 47 H 0.10 0.98 6.18 -51.93 -0.32 0.66 16 48 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -30.45 391.70 -9.56 -40.01 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -7.25 Total: 12.58 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.04 Total: -8.40 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.06 Total: -52.20 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.09 Total: -14.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.45 -9.56 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987281693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.050 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds