Wall clock time and date at job start Wed Apr 1 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35705 * 116.99932 * 2 1 4 4 C 1.39019 * 119.91273 * 359.72801 * 3 2 1 5 5 C 1.37686 * 120.08943 * 179.76342 * 4 3 2 6 6 C 1.39747 * 119.90896 * 0.48487 * 5 4 3 7 7 C 1.47600 * 120.08601 * 179.74508 * 6 5 4 8 8 O 1.21592 * 120.00325 * 184.24419 * 7 6 5 9 9 N 1.34777 * 120.00343 * 4.24086 * 7 6 5 10 10 C 1.47424 * 125.65467 * 183.18210 * 9 7 6 11 11 C 1.54907 * 104.83376 * 155.83413 * 10 9 7 12 12 C 1.55151 * 101.58186 * 37.00845 * 11 10 9 13 13 H 1.09002 * 110.71802 * 82.86618 * 12 11 10 14 14 N 1.46500 * 110.71899 * 205.95616 * 12 11 10 15 15 C 1.36940 * 120.00208 * 273.54411 * 14 12 11 16 16 H 1.08005 * 119.99861 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00259 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99639 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47158 * 60.00502 * 19 17 15 21 21 H 1.48501 * 109.47094 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47454 * 300.00255 * 19 17 15 23 23 C 1.47028 * 125.64351 * 2.87136 * 9 7 6 24 24 H 1.08996 * 109.88111 * 300.51158 * 23 9 7 25 25 C 1.52993 * 109.88272 * 61.67952 * 23 9 7 26 26 C 1.39712 * 119.82795 * 359.77062 * 6 5 4 27 27 C 1.37717 * 119.91036 * 359.97438 * 26 6 5 28 28 C 1.50701 * 119.95847 * 180.02562 * 27 26 6 29 29 C 1.53002 * 117.49682 * 8.72880 * 28 27 26 30 30 C 1.52995 * 117.49937 * 300.07195 * 28 27 26 31 31 H 1.09003 * 109.47555 * 299.99518 * 1 2 3 32 32 H 1.09006 * 109.47041 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47372 * 60.00247 * 1 2 3 34 34 H 1.08000 * 119.95475 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.04219 * 180.25492 * 5 4 3 36 36 H 1.08999 * 110.36582 * 274.67155 * 10 9 7 37 37 H 1.09002 * 110.36602 * 36.88172 * 10 9 7 38 38 H 1.09005 * 111.00634 * 155.08456 * 11 10 9 39 39 H 1.09002 * 111.00505 * 278.93037 * 11 10 9 40 40 H 0.96999 * 120.00140 * 93.54794 * 14 12 11 41 41 H 0.97007 * 119.99659 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.47592 * 76.08878 * 25 23 9 43 43 H 1.09002 * 109.47175 * 196.08868 * 25 23 9 44 44 H 1.09002 * 109.47504 * 316.09308 * 25 23 9 45 45 H 1.08000 * 120.04608 * 180.02562 * 26 6 5 46 46 H 1.09002 * 115.55131 * 154.39391 * 28 27 26 47 47 H 1.09006 * 117.49866 * 359.97438 * 29 28 27 48 48 H 1.09003 * 117.50245 * 145.01482 * 29 28 27 49 49 H 1.09005 * 117.50031 * 214.97666 * 30 28 27 50 50 H 1.08997 * 117.50128 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2861 2.3739 -0.0057 5 6 1.9073 3.6026 -0.0008 6 6 3.3028 3.6779 -0.0003 7 6 3.9728 4.9930 -0.0008 8 8 5.1845 5.0580 -0.0783 9 7 3.2416 6.1220 0.0847 10 6 3.7727 7.4961 0.0286 11 6 2.5817 8.3623 -0.4518 12 6 1.3893 7.6793 0.2686 13 1 1.2995 8.0407 1.2930 14 7 0.1427 7.9012 -0.4684 15 6 -0.5946 9.0327 -0.2419 16 1 -0.2568 9.7618 0.4798 17 6 -1.7754 9.2431 -0.9405 18 7 -2.1868 8.3547 -1.8203 19 14 -2.7808 10.7870 -0.6320 20 1 -1.9596 11.9836 -0.9470 21 1 -3.9878 10.7728 -1.4970 22 1 -3.1944 10.8318 0.7934 23 6 1.7813 6.1871 0.2428 24 1 1.2951 5.6886 -0.5958 25 6 1.3701 5.5210 1.5573 26 6 4.0620 2.5050 0.0000 27 6 3.4330 1.2799 0.0004 28 6 4.2509 0.0141 0.0014 29 6 5.7609 0.1489 0.2079 30 6 5.2059 -0.2108 -1.1725 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 -0.8900 34 1 0.2077 2.3149 -0.0097 35 1 1.3170 4.5069 -0.0011 36 1 4.1004 7.8167 1.0175 37 1 4.5977 7.5553 -0.6813 38 1 2.6944 9.3965 -0.1263 39 1 2.4688 8.3053 -1.5344 40 1 -0.1605 7.2465 -1.1167 41 1 -3.0118 8.5020 -2.3088 42 1 1.5993 6.1868 2.3893 43 1 0.2998 5.3151 1.5410 44 1 1.9181 4.5866 1.6782 45 1 5.1406 2.5591 0.0008 46 1 3.7610 -0.8619 0.4267 47 1 6.1628 1.1531 0.3426 48 1 6.2645 -0.6385 0.7687 49 1 5.3446 -1.2349 -1.5195 50 1 5.2423 0.5565 -1.9458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987281693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:30 Heat of formation + Delta-G solvation = 20.472770 kcal Electronic energy + Delta-G solvation = -30767.178328 eV Core-core repulsion = 26761.956703 eV Total energy + Delta-G solvation = -4005.221625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.18996 -40.94487 -39.12809 -38.65867 -37.50202 -35.92530 -33.65005 -33.18779 -31.61909 -31.10670 -30.55732 -28.22704 -26.99146 -25.11622 -24.97885 -24.77419 -23.34975 -22.72051 -21.95664 -21.54856 -20.43364 -19.31484 -19.01248 -18.13904 -17.75874 -17.12346 -16.87020 -16.71786 -16.35389 -16.15458 -15.68952 -15.59562 -15.30996 -15.18279 -14.95636 -14.66151 -14.47824 -14.24949 -13.91908 -13.73556 -13.51086 -13.15878 -13.01257 -12.89280 -12.88107 -12.74351 -12.66039 -12.49274 -12.29833 -12.25438 -12.11922 -11.99022 -11.86649 -11.71903 -11.50407 -11.45645 -11.20804 -11.01945 -10.88712 -9.92353 -9.71480 -9.11662 -9.00184 -7.92030 -5.20982 -0.17691 0.21651 1.52421 1.53424 1.59167 1.71590 1.85944 2.25869 2.58537 2.63047 3.09798 3.32606 3.39089 3.46585 3.56460 3.71888 3.85736 3.89873 3.96438 3.98141 4.10138 4.12467 4.21494 4.24780 4.33062 4.37186 4.40505 4.41084 4.49103 4.51950 4.65550 4.72376 4.75732 4.78604 4.85411 4.88843 4.91079 5.02157 5.03780 5.13241 5.18990 5.21972 5.22702 5.25257 5.29570 5.39383 5.45285 5.57440 5.59180 6.28066 6.30337 6.42163 7.02965 7.36748 8.06599 8.31107 9.30654 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.002901 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.300671 B = 9649.802335 C =11206.502468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.317 6.317 3 C 0.162 3.838 4 C -0.219 4.219 5 C -0.080 4.080 6 C -0.191 4.191 7 C 0.574 3.426 8 O -0.583 6.583 9 N -0.603 5.603 10 C 0.111 3.889 11 C -0.147 4.147 12 C 0.173 3.827 13 H 0.074 0.926 14 N -0.724 5.724 15 C -0.237 4.237 16 H 0.080 0.920 17 C -0.069 4.069 18 N -0.966 5.966 19 Si 0.967 3.033 20 H -0.281 1.281 21 H -0.300 1.300 22 H -0.277 1.277 23 C 0.116 3.884 24 H 0.086 0.914 25 C -0.167 4.167 26 C -0.029 4.029 27 C -0.108 4.108 28 C -0.113 4.113 29 C -0.175 4.175 30 C -0.167 4.167 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.156 0.844 35 H 0.176 0.824 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.137 0.863 46 H 0.122 0.878 47 H 0.090 0.910 48 H 0.117 0.883 49 H 0.115 0.885 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.016 -17.813 5.977 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.229 6.229 3 C 0.115 3.885 4 C -0.238 4.238 5 C -0.097 4.097 6 C -0.194 4.194 7 C 0.367 3.633 8 O -0.465 6.465 9 N -0.335 5.335 10 C -0.011 4.011 11 C -0.188 4.188 12 C 0.063 3.937 13 H 0.092 0.908 14 N -0.364 5.364 15 C -0.368 4.368 16 H 0.098 0.902 17 C -0.261 4.261 18 N -0.616 5.616 19 Si 0.797 3.203 20 H -0.207 1.207 21 H -0.227 1.227 22 H -0.203 1.203 23 C 0.012 3.988 24 H 0.103 0.897 25 C -0.225 4.225 26 C -0.048 4.048 27 C -0.109 4.109 28 C -0.131 4.131 29 C -0.211 4.211 30 C -0.204 4.204 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.082 0.918 34 H 0.174 0.826 35 H 0.192 0.808 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.208 0.792 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.154 0.846 46 H 0.140 0.860 47 H 0.109 0.891 48 H 0.135 0.865 49 H 0.133 0.867 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.678 -17.867 6.016 21.191 hybrid contribution -1.042 1.021 -0.487 1.538 sum 8.635 -16.846 5.528 19.721 Atomic orbital electron populations 1.23442 0.76192 1.05942 1.02508 1.86016 1.23477 1.26031 1.87415 1.19158 0.91552 0.84960 0.92836 1.21449 1.01529 0.91212 1.09582 1.23009 0.93977 1.00824 0.91906 1.19633 0.94273 0.92419 1.13046 1.18115 0.85795 0.83799 0.75621 1.90707 1.14705 1.87620 1.53505 1.48426 1.08056 1.06066 1.70951 1.22283 0.96927 0.80062 1.01877 1.23425 0.94919 0.99761 1.00696 1.21456 0.85720 0.90736 0.95746 0.90768 1.42422 1.22736 1.23833 1.47370 1.19514 1.01475 0.98096 1.17743 0.90229 1.25453 0.99833 1.01230 0.99622 1.69789 1.24422 1.37360 1.30057 0.85311 0.77873 0.79868 0.77274 1.20717 1.22670 1.20347 1.22210 0.79752 0.97997 0.98792 0.89682 1.22629 1.02866 1.01199 0.95787 1.20934 1.00364 0.89773 0.93740 1.18530 0.90507 0.94305 1.07543 1.20794 0.91173 0.95957 1.05203 1.23181 0.94431 1.03548 0.99990 1.23097 1.02392 1.03456 0.91444 0.91442 0.85758 0.91830 0.82621 0.80806 0.90035 0.91075 0.89449 0.92420 0.79222 0.94082 0.91341 0.89955 0.90756 0.84573 0.85979 0.89126 0.86518 0.86685 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -6.25 9.65 -90.25 -0.87 -7.12 16 3 C 0.16 3.75 6.67 22.64 0.15 3.90 16 4 C -0.22 -5.02 9.01 22.33 0.20 -4.82 16 5 C -0.08 -2.11 6.44 22.50 0.14 -1.97 16 6 C -0.19 -5.66 5.33 -20.09 -0.11 -5.77 16 7 C 0.57 19.47 7.57 86.71 0.66 20.13 16 8 O -0.58 -22.76 16.63 -4.00 -0.07 -22.82 16 9 N -0.60 -18.97 3.07 -805.16 -2.47 -21.44 16 10 C 0.11 3.29 6.90 86.85 0.60 3.89 16 11 C -0.15 -4.77 6.76 31.98 0.22 -4.55 16 12 C 0.17 6.05 3.10 46.17 0.14 6.20 16 13 H 0.07 2.54 7.56 -2.39 -0.02 2.52 16 14 N -0.72 -32.57 5.25 -317.35 -1.67 -34.24 16 15 C -0.24 -11.96 9.98 84.03 0.84 -11.12 16 16 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 17 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 18 N -0.97 -55.51 13.06 21.65 0.28 -55.22 16 19 Si 0.97 43.60 29.55 68.60 2.03 45.63 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 C 0.12 3.53 2.45 45.33 0.11 3.64 16 24 H 0.09 2.74 5.67 -2.39 -0.01 2.73 16 25 C -0.17 -4.36 7.78 71.98 0.56 -3.80 16 26 C -0.03 -0.80 8.83 22.50 0.20 -0.61 16 27 C -0.11 -2.63 5.62 -19.81 -0.11 -2.74 16 28 C -0.11 -2.24 5.74 -11.54 -0.07 -2.31 16 29 C -0.17 -3.01 9.86 30.62 0.30 -2.71 16 30 C -0.17 -2.91 10.16 30.62 0.31 -2.60 16 31 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 32 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.06 0.77 7.64 -2.39 -0.02 0.75 16 34 H 0.16 2.85 6.28 -2.91 -0.02 2.83 16 35 H 0.18 4.67 2.02 -8.29 -0.02 4.65 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 38 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.38 18.25 7.51 -92.71 -0.70 17.55 16 41 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 42 H 0.07 1.72 7.71 -2.39 -0.02 1.70 16 43 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 44 H 0.07 1.88 4.76 -2.39 -0.01 1.87 16 45 H 0.14 3.76 5.60 -2.91 -0.02 3.75 16 46 H 0.12 2.24 7.76 -2.39 -0.02 2.22 16 47 H 0.09 1.74 6.18 -2.38 -0.01 1.73 16 48 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -64.83 391.70 3.24 -61.59 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: 0.27 Total: 40.78 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.73 Total: -7.16 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -3.85 Total: -110.89 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.94 Total: -29.95 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -64.83 3.24 -61.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987281693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.062 kcal (2) G-P(sol) polarization free energy of solvation -64.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds