Wall clock time and date at job start Wed Apr 1 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.87583 * 2 1 4 4 C 1.54323 * 109.88106 * 238.98165 * 2 1 3 5 5 H 1.09006 * 110.71764 * 144.25457 * 4 2 1 6 6 N 1.46501 * 110.71956 * 21.16702 * 4 2 1 7 7 C 1.36936 * 120.00379 * 154.99834 * 6 4 2 8 8 H 1.07997 * 119.99752 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00367 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00339 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99946 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46961 * 89.99768 * 11 9 7 13 13 H 1.48497 * 109.47325 * 209.99827 * 11 9 7 14 14 H 1.48500 * 109.47117 * 330.00311 * 11 9 7 15 15 C 1.55147 * 102.94784 * 262.62439 * 4 2 1 16 16 C 1.54914 * 101.57928 * 324.49777 * 15 4 2 17 17 N 1.47027 * 110.00938 * 121.10100 * 2 1 3 18 18 C 1.34773 * 125.64711 * 300.52153 * 17 2 1 19 19 O 1.21282 * 120.00056 * 0.02562 * 18 17 2 20 20 C 1.50703 * 119.99998 * 179.97438 * 18 17 2 21 21 O 1.42893 * 109.46943 * 180.02562 * 20 18 17 22 22 C 1.35906 * 116.99965 * 180.02562 * 21 20 18 23 23 C 1.38752 * 120.08853 * 0.02562 * 22 21 20 24 24 C 1.38001 * 119.87791 * 179.97438 * 23 22 21 25 25 C 1.38553 * 120.29152 * 0.02562 * 24 23 22 26 26 C 1.38258 * 119.93376 * 359.97438 * 25 24 23 27 27 C 1.38417 * 119.90752 * 359.74756 * 26 25 24 28 28 C 1.51385 * 109.75638 * 180.02562 * 26 25 24 29 29 C 1.54345 * 105.16541 * 342.80235 * 28 26 25 30 30 C 1.51386 * 130.32316 * 180.02562 * 25 24 23 31 31 H 1.08994 * 109.47215 * 180.70406 * 1 2 3 32 32 H 1.09001 * 109.46642 * 300.69909 * 1 2 3 33 33 H 1.09002 * 109.46991 * 60.69928 * 1 2 3 34 34 H 0.97002 * 120.00224 * 334.99458 * 6 4 2 35 35 H 0.96998 * 120.00312 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00659 * 82.56898 * 15 4 2 37 37 H 1.08996 * 111.00764 * 206.42646 * 15 4 2 38 38 H 1.09000 * 110.36623 * 155.84512 * 16 15 4 39 39 H 1.09001 * 110.36874 * 278.05773 * 16 15 4 40 40 H 1.08992 * 109.47116 * 300.00626 * 20 18 17 41 41 H 1.09004 * 109.46801 * 60.00288 * 20 18 17 42 42 H 1.07998 * 120.06514 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.85416 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.91253 * 180.25287 * 27 26 25 45 45 H 1.08992 * 110.30272 * 223.88199 * 28 26 25 46 46 H 1.08991 * 110.38502 * 101.76241 * 28 26 25 47 47 H 1.09003 * 110.81925 * 268.14265 * 29 28 26 48 48 H 1.08993 * 110.99181 * 144.67509 * 29 28 26 49 49 H 1.08998 * 110.30295 * 316.09642 * 30 25 24 50 50 H 1.09000 * 110.30565 * 78.14564 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 2.9642 -0.2793 -1.6203 6 7 1.0295 -0.7989 -2.2888 7 6 1.3957 -0.9332 -3.6015 8 1 2.4405 -1.0010 -3.8663 9 6 0.4241 -0.9821 -4.5916 10 7 0.7761 -1.1117 -5.8532 11 14 -1.3831 -0.8655 -4.1335 12 1 -1.8040 0.5586 -4.1378 13 1 -2.1938 -1.6242 -5.1195 14 1 -1.5883 -1.4381 -2.7787 15 6 2.3556 -2.1674 -0.6946 16 6 2.8618 -1.8473 0.7341 17 7 2.0331 -0.7136 1.1829 18 6 1.7793 -0.3853 2.4652 19 8 1.0805 0.5729 2.7189 20 6 2.3627 -1.2097 3.5838 21 8 1.9524 -0.6661 4.8400 22 6 2.3959 -1.2965 5.9594 23 6 3.2098 -2.4151 5.8516 24 6 3.6580 -3.0515 6.9911 25 6 3.2985 -2.5787 8.2429 26 6 2.4876 -1.4643 8.3528 27 6 2.0412 -0.8204 7.2117 28 6 2.2426 -1.1518 9.8136 29 6 2.6250 -2.4406 10.5719 30 6 3.6539 -3.0906 9.6225 31 1 -0.3633 -1.0275 0.0126 32 1 -0.3632 0.5247 0.8837 33 1 -0.3633 0.5029 -0.8962 34 1 0.0910 -0.7377 -2.0510 35 1 0.0971 -1.1462 -6.5451 36 1 1.4503 -2.7735 -0.6617 37 1 3.1310 -2.6578 -1.2830 38 1 2.7164 -2.7062 1.3893 39 1 3.9140 -1.5639 0.7092 40 1 2.0095 -2.2374 3.5001 41 1 3.4506 -1.1929 3.5181 42 1 3.4920 -2.7870 4.8778 43 1 4.2912 -3.9224 6.9068 44 1 1.4111 0.0525 7.2975 45 1 1.1918 -0.9137 9.9783 46 1 2.8727 -0.3227 10.1353 47 1 1.7561 -3.0857 10.7022 48 1 3.0798 -2.2069 11.5344 49 1 3.5669 -4.1766 9.6570 50 1 4.6649 -2.7842 9.8909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987468786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:52 Heat of formation + Delta-G solvation = -21.752445 kcal Electronic energy + Delta-G solvation = -29407.490870 eV Core-core repulsion = 25400.438223 eV Total energy + Delta-G solvation = -4007.052647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.89920 -40.16737 -38.87814 -37.46877 -35.09623 -34.42857 -32.07931 -31.72782 -30.93105 -30.05918 -28.87754 -28.39579 -26.90900 -25.55689 -23.40600 -23.10505 -22.67157 -21.21047 -21.17715 -19.79145 -18.89413 -18.18083 -18.01508 -17.02223 -16.67824 -16.22602 -15.98190 -15.75079 -15.56134 -15.05421 -14.69785 -14.51904 -14.18038 -13.89592 -13.73820 -13.47261 -13.27850 -13.05482 -12.86044 -12.70104 -12.62617 -12.34334 -12.19199 -12.09891 -11.90424 -11.81392 -11.64847 -11.58437 -11.49355 -11.23197 -10.99837 -10.93689 -10.85401 -10.58642 -10.42510 -10.11833 -9.77286 -9.59415 -9.11632 -9.03536 -8.62210 -8.31685 -7.39268 -5.86210 -3.23468 0.99392 1.11299 2.31591 2.52634 3.31556 3.34529 3.35102 3.39427 3.40743 4.08775 4.18201 4.29209 4.50879 4.52116 4.58525 4.67219 4.71134 4.74950 4.83381 4.91327 4.96242 5.03188 5.09618 5.12304 5.28436 5.30986 5.31619 5.39908 5.42203 5.48677 5.48940 5.53860 5.59209 5.73255 5.76757 5.81843 5.83111 5.95281 5.96249 6.05699 6.09174 6.31380 6.32499 6.38408 6.41733 6.49061 6.52112 6.76136 7.09219 7.50555 7.88288 8.11400 8.32397 9.09452 9.81745 10.00114 11.31482 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030583 B = 0.001843 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.309846 B =15190.147026 C =15597.122390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.127 3.873 3 H 0.078 0.922 4 C 0.180 3.820 5 H 0.077 0.923 6 N -0.740 5.740 7 C -0.251 4.251 8 H 0.092 0.908 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.878 3.122 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.153 4.153 16 C 0.093 3.907 17 N -0.607 5.607 18 C 0.530 3.470 19 O -0.519 6.519 20 C 0.047 3.953 21 O -0.289 6.289 22 C 0.133 3.867 23 C -0.209 4.209 24 C -0.066 4.066 25 C -0.139 4.139 26 C -0.059 4.059 27 C -0.138 4.138 28 C -0.083 4.083 29 C -0.121 4.121 30 C -0.077 4.077 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.368 0.632 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.492 -5.196 31.198 32.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.024 3.976 3 H 0.096 0.904 4 C 0.068 3.932 5 H 0.095 0.905 6 N -0.384 5.384 7 C -0.380 4.380 8 H 0.110 0.890 9 C -0.186 4.186 10 N -0.576 5.576 11 Si 0.708 3.292 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.194 4.194 16 C -0.030 4.030 17 N -0.343 5.343 18 C 0.316 3.684 19 O -0.394 6.394 20 C -0.031 4.031 21 O -0.201 6.201 22 C 0.088 3.912 23 C -0.228 4.228 24 C -0.084 4.084 25 C -0.139 4.139 26 C -0.059 4.059 27 C -0.156 4.156 28 C -0.120 4.120 29 C -0.158 4.158 30 C -0.114 4.114 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.204 0.796 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.148 0.852 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.071 -4.486 31.137 32.243 hybrid contribution -1.110 -0.308 -0.119 1.158 sum 5.962 -4.793 31.018 31.947 Atomic orbital electron populations 1.22071 0.95058 1.02307 1.02779 1.21922 0.95061 0.96265 0.84341 0.90423 1.21149 0.93136 0.92241 0.86655 0.90529 1.42961 1.03520 1.88708 1.03172 1.19057 0.94900 1.43214 0.80858 0.88984 1.24648 0.97332 1.01580 0.95075 1.69687 1.32624 1.56400 0.98888 0.86670 0.86917 0.78085 0.77561 1.20797 1.21522 1.20259 1.23529 1.01995 1.01071 0.92855 1.22483 0.94839 0.88198 0.97511 1.48466 1.50466 1.31012 1.04402 1.19517 0.81570 0.85222 0.82086 1.90735 1.37579 1.28255 1.82866 1.22463 1.00548 0.97860 0.82278 1.86146 1.69654 1.52666 1.11615 1.18835 0.94010 0.91836 0.86534 1.21154 1.03615 0.98336 0.99711 1.20378 0.98424 0.98976 0.90622 1.20501 1.00749 0.97992 0.94702 1.20324 0.96215 0.94864 0.94500 1.19785 1.04712 1.02603 0.88517 1.21069 1.02369 0.98581 0.89948 1.22295 0.99098 0.96298 0.98119 1.20972 0.99431 1.00455 0.90550 0.92536 0.91535 0.90847 0.79586 0.92905 0.90710 0.89874 0.91266 0.91027 0.89064 0.89016 0.85177 0.85880 0.85177 0.90427 0.89895 0.90904 0.90485 0.90909 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 7.94 37.16 0.29 -2.54 16 2 C 0.13 2.08 3.47 -66.95 -0.23 1.85 16 3 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.18 3.16 3.48 -66.10 -0.23 2.94 16 5 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 6 N -0.74 -16.42 4.75 -51.66 -0.25 -16.67 16 7 C -0.25 -6.69 10.44 -15.06 -0.16 -6.85 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 10 N -0.93 -28.28 13.97 55.49 0.78 -27.51 16 11 Si 0.88 21.54 27.73 -169.99 -4.71 16.82 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 15 C -0.15 -2.22 6.77 -24.58 -0.17 -2.39 16 16 C 0.09 1.03 6.69 -2.53 -0.02 1.01 16 17 N -0.61 -8.48 3.08 -163.01 -0.50 -8.99 16 18 C 0.53 7.81 7.71 -10.99 -0.08 7.72 16 19 O -0.52 -9.76 15.41 -14.36 -0.22 -9.98 16 20 C 0.05 0.52 4.23 36.01 0.15 0.67 16 21 O -0.29 -3.86 9.67 -39.35 -0.38 -4.24 16 22 C 0.13 1.53 6.68 -39.26 -0.26 1.27 16 23 C -0.21 -1.96 9.04 -39.48 -0.36 -2.32 16 24 C -0.07 -0.56 10.03 -39.55 -0.40 -0.96 16 25 C -0.14 -1.19 6.14 -104.16 -0.64 -1.83 16 26 C -0.06 -0.54 6.13 -104.21 -0.64 -1.18 16 27 C -0.14 -1.49 9.98 -39.38 -0.39 -1.88 16 28 C -0.08 -0.53 6.77 -26.84 -0.18 -0.72 16 29 C -0.12 -0.62 7.08 -25.32 -0.18 -0.80 16 30 C -0.08 -0.46 6.77 -26.84 -0.18 -0.64 16 31 H 0.06 0.98 8.02 -51.93 -0.42 0.56 16 32 H 0.07 1.17 6.76 -51.93 -0.35 0.82 16 33 H 0.07 1.33 6.79 -51.93 -0.35 0.98 16 34 H 0.37 8.17 2.92 -40.82 -0.12 8.05 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.59 7.48 -51.93 -0.39 0.21 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.80 7.37 -51.93 -0.38 0.42 16 41 H 0.09 0.77 7.66 -51.93 -0.40 0.38 16 42 H 0.13 0.95 6.31 -52.49 -0.33 0.61 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -33.39 395.51 -10.92 -44.31 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.82 Total: 6.75 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.77 Total: -6.46 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.03 Total: -53.16 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.60 Total: -14.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.39 -10.92 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987468786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.558 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds