Wall clock time and date at job start Wed Apr 1 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.87016 * 2 1 4 4 C 1.54323 * 109.88525 * 238.98344 * 2 1 3 5 5 H 1.08997 * 110.71815 * 100.02619 * 4 2 1 6 6 N 1.46496 * 110.71748 * 336.75170 * 4 2 1 7 7 C 1.36937 * 120.00106 * 155.00274 * 6 4 2 8 8 H 1.08004 * 119.99542 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00318 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99864 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47171 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47112 * 120.00053 * 11 9 7 14 14 H 1.48496 * 109.46949 * 239.99970 * 11 9 7 15 15 C 1.55406 * 102.82533 * 218.48189 * 4 2 1 16 16 C 1.54907 * 101.66720 * 35.33739 * 15 4 2 17 17 N 1.47022 * 109.88054 * 121.01188 * 2 1 3 18 18 C 1.34779 * 125.65208 * 298.32174 * 17 2 1 19 19 O 1.21581 * 120.00260 * 181.69026 * 18 17 2 20 20 C 1.47599 * 119.99512 * 1.69652 * 18 17 2 21 21 C 1.39734 * 120.09062 * 350.64669 * 20 18 17 22 22 C 1.37711 * 119.90737 * 179.76807 * 21 20 18 23 23 C 1.38994 * 120.08845 * 0.48183 * 22 21 20 24 24 O 1.35717 * 119.90698 * 179.74331 * 23 22 21 25 25 C 1.42896 * 117.00095 * 0.03013 * 24 23 22 26 26 C 1.53004 * 109.47018 * 179.97438 * 25 24 23 27 27 C 1.52998 * 117.49483 * 243.61873 * 26 25 24 28 28 C 1.52994 * 117.49722 * 174.99791 * 26 25 24 29 29 C 1.38991 * 120.17735 * 359.77310 * 23 22 21 30 30 C 1.37701 * 120.09039 * 359.97438 * 29 23 22 31 31 H 1.09004 * 109.47510 * 289.74677 * 1 2 3 32 32 H 1.08998 * 109.46893 * 169.74879 * 1 2 3 33 33 H 1.08997 * 109.47199 * 49.74944 * 1 2 3 34 34 H 0.97000 * 120.00007 * 334.99907 * 6 4 2 35 35 H 0.97001 * 119.99811 * 179.97438 * 10 9 7 36 36 H 1.09003 * 110.89039 * 277.25947 * 15 4 2 37 37 H 1.09002 * 111.03434 * 153.47422 * 15 4 2 38 38 H 1.09003 * 110.36621 * 204.23412 * 16 15 4 39 39 H 1.08996 * 110.36692 * 81.91519 * 16 15 4 40 40 H 1.07991 * 120.04317 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.94748 * 180.21296 * 22 21 20 42 42 H 1.09004 * 109.46772 * 299.99724 * 25 24 23 43 43 H 1.08993 * 109.47570 * 59.99358 * 25 24 23 44 44 H 1.09002 * 115.54703 * 29.32288 * 26 25 24 45 45 H 1.08999 * 117.50261 * 0.02562 * 27 26 25 46 46 H 1.08999 * 117.49410 * 145.02002 * 27 26 25 47 47 H 1.09004 * 117.49910 * 214.98001 * 28 26 25 48 48 H 1.09001 * 117.50454 * 359.97438 * 28 26 25 49 49 H 1.07997 * 119.95383 * 179.97438 * 29 23 22 50 50 H 1.08002 * 120.04364 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.3529 -0.0432 -2.0200 6 7 1.0472 -1.6831 -1.7497 7 6 1.0607 -2.0576 -3.0668 8 1 1.8140 -1.6630 -3.7326 9 6 0.1063 -2.9442 -3.5461 10 7 -0.8114 -3.4254 -2.7345 11 14 0.1244 -3.4545 -5.3430 12 1 1.2481 -2.7774 -6.0386 13 1 0.2976 -4.9262 -5.4379 14 1 -1.1587 -3.0649 -5.9811 15 6 3.2876 -1.5151 -0.6901 16 6 2.8145 -1.8783 0.7395 17 7 2.0299 -0.7123 1.1850 18 6 1.8084 -0.3577 2.4663 19 8 2.2987 -1.0065 3.3701 20 6 0.9705 0.8182 2.7721 21 6 0.5677 1.6774 1.7464 22 6 -0.2181 2.7708 2.0353 23 6 -0.6021 3.0259 3.3466 24 8 -1.3721 4.1074 3.6279 25 6 -1.7505 4.9381 2.5285 26 6 -2.6101 6.0971 3.0372 27 6 -4.0574 6.1716 2.5465 28 6 -3.0207 7.1690 2.0256 29 6 -0.1990 2.1767 4.3705 30 6 0.5824 1.0784 4.0891 31 1 -0.3634 0.3472 0.9672 32 1 -0.3633 -1.0113 -0.1829 33 1 -0.3633 0.6640 -0.7843 34 1 0.3705 -2.0372 -1.1517 35 1 -1.4786 -4.0447 -3.0696 36 1 4.1655 -0.8697 -0.6591 37 1 3.4853 -2.4128 -1.2761 38 1 3.6716 -2.0318 1.3953 39 1 2.1887 -2.7704 0.7168 40 1 0.8694 1.4822 0.7280 41 1 -0.5326 3.4333 1.2425 42 1 -0.8560 5.3328 2.0467 43 1 -2.3215 4.3511 1.8092 44 1 -2.4072 6.4200 4.0583 45 1 -4.3973 5.3946 1.8618 46 1 -4.8070 6.5434 3.2450 47 1 -3.0884 8.1972 2.3813 48 1 -2.6782 7.0488 0.9978 49 1 -0.4991 2.3786 5.3881 50 1 0.8955 0.4192 4.8853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987556429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:07 Heat of formation + Delta-G solvation = 45.751473 kcal Electronic energy + Delta-G solvation = -30280.392635 eV Core-core repulsion = 26276.267177 eV Total energy + Delta-G solvation = -4004.125458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.96108 -39.88656 -38.06256 -37.52151 -36.72314 -34.06859 -32.66936 -31.48473 -30.65584 -29.82573 -28.85203 -27.76013 -25.53317 -23.76581 -23.61174 -22.94317 -22.82429 -21.76176 -20.84551 -19.92546 -19.25262 -18.37043 -17.66664 -16.98418 -16.69175 -16.20619 -15.82345 -15.34863 -15.08536 -15.03956 -14.68203 -14.44379 -14.03138 -13.89512 -13.55552 -13.41661 -13.14372 -13.03413 -12.92948 -12.59095 -12.46947 -12.23635 -11.98058 -11.78163 -11.63403 -11.41446 -11.25721 -11.06776 -11.04481 -10.91265 -10.80489 -10.70477 -10.56640 -10.40475 -10.29503 -10.07063 -9.71693 -9.60865 -9.01976 -8.96259 -8.42970 -8.17178 -7.09739 -5.88005 -3.18167 0.93179 1.28332 2.75677 2.98669 3.25242 3.36543 3.36985 3.42644 3.44957 3.88810 4.26947 4.40910 4.47931 4.52809 4.61547 4.64757 4.72733 4.83719 4.91832 4.99364 5.11124 5.13159 5.20339 5.25115 5.28509 5.33394 5.44689 5.45520 5.50151 5.58755 5.66092 5.66401 5.71988 5.74425 5.86891 5.95747 6.05384 6.10149 6.13078 6.23248 6.28047 6.33555 6.44835 6.53825 6.56445 6.68745 6.75423 6.88744 7.18759 7.61207 7.82308 8.29880 8.42309 9.41703 9.95414 10.29913 11.34036 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010302 B = 0.002791 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.311742 B =10029.973076 C =12098.527441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.106 3.894 3 H 0.082 0.918 4 C 0.174 3.826 5 H 0.073 0.927 6 N -0.713 5.713 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.160 4.160 16 C 0.113 3.887 17 N -0.602 5.602 18 C 0.576 3.424 19 O -0.553 6.553 20 C -0.177 4.177 21 C -0.064 4.064 22 C -0.231 4.231 23 C 0.156 3.844 24 O -0.311 6.311 25 C 0.089 3.911 26 C -0.158 4.158 27 C -0.176 4.176 28 C -0.170 4.170 29 C -0.172 4.172 30 C -0.018 4.018 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.388 0.612 35 H 0.256 0.744 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.175 0.825 41 H 0.131 0.869 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.134 0.866 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 19.024 10.491 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.002 3.998 3 H 0.100 0.900 4 C 0.062 3.938 5 H 0.091 0.909 6 N -0.356 5.356 7 C -0.376 4.376 8 H 0.091 0.909 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.202 4.202 16 C -0.008 4.008 17 N -0.334 5.334 18 C 0.366 3.634 19 O -0.433 6.433 20 C -0.181 4.181 21 C -0.081 4.081 22 C -0.249 4.249 23 C 0.110 3.890 24 O -0.224 6.224 25 C 0.014 3.986 26 C -0.176 4.176 27 C -0.213 4.213 28 C -0.207 4.207 29 C -0.191 4.191 30 C -0.037 4.037 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.226 0.774 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.191 0.809 41 H 0.149 0.851 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.134 0.866 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.152 0.848 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.750 18.721 11.015 21.734 hybrid contribution -0.369 -0.473 -1.038 1.198 sum -1.119 18.248 9.977 20.828 Atomic orbital electron populations 1.22806 0.94156 1.05213 1.01690 1.22418 0.95260 0.95621 0.86522 0.90025 1.21226 0.89198 0.91792 0.91633 0.90911 1.42638 1.32520 1.51489 1.08923 1.19270 1.10893 1.21468 0.86003 0.90912 1.24755 0.97916 0.99926 0.97949 1.69666 1.18415 1.35407 1.34168 0.86124 0.77237 0.78105 0.84705 1.20507 1.21853 1.21867 1.23591 0.99044 1.02426 0.95118 1.22191 0.94899 0.88318 0.95427 1.48466 1.51810 1.28570 1.04601 1.17780 0.80352 0.83994 0.81241 1.90736 1.52216 1.55358 1.44946 1.19775 1.05327 0.98468 0.94495 1.22868 0.92459 0.90908 1.01895 1.21190 1.06484 1.01889 0.95381 1.19275 0.89693 0.86472 0.93557 1.85992 1.64895 1.35585 1.35924 1.22359 0.98208 0.90095 0.87981 1.22099 0.97081 0.97887 1.00542 1.23122 0.91997 1.02461 1.03708 1.23002 1.03238 0.95488 0.98953 1.20296 1.04022 0.96121 0.98649 1.21038 0.92344 0.94554 0.95715 0.91401 0.89767 0.90953 0.77409 0.93397 0.92024 0.89299 0.91296 0.91137 0.80894 0.85094 0.91285 0.91441 0.86580 0.88337 0.88383 0.88152 0.88351 0.84815 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 7.46 37.15 0.28 -2.61 16 2 C 0.11 1.62 2.69 -66.96 -0.18 1.44 16 3 H 0.08 1.06 6.21 -51.93 -0.32 0.74 16 4 C 0.17 3.06 3.50 -65.96 -0.23 2.83 16 5 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 6 N -0.71 -16.01 4.54 -51.52 -0.23 -16.25 16 7 C -0.25 -6.24 9.96 -15.06 -0.15 -6.39 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 11 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 C -0.16 -2.61 6.77 -24.45 -0.17 -2.78 16 16 C 0.11 1.93 6.90 -2.53 -0.02 1.92 16 17 N -0.60 -10.04 3.06 -165.99 -0.51 -10.55 16 18 C 0.58 10.08 7.65 -12.44 -0.10 9.99 16 19 O -0.55 -11.17 16.62 5.29 0.09 -11.08 16 20 C -0.18 -2.64 5.33 -104.96 -0.56 -3.20 16 21 C -0.06 -0.83 6.16 -39.22 -0.24 -1.07 16 22 C -0.23 -2.66 9.01 -39.49 -0.36 -3.01 16 23 C 0.16 1.86 6.70 -39.02 -0.26 1.60 16 24 O -0.31 -3.42 10.12 -18.86 -0.19 -3.62 16 25 C 0.09 0.74 5.02 37.16 0.19 0.92 16 26 C -0.16 -1.13 6.06 -90.62 -0.55 -1.68 16 27 C -0.18 -1.12 10.18 -26.73 -0.27 -1.39 16 28 C -0.17 -0.96 10.25 -26.74 -0.27 -1.24 16 29 C -0.17 -2.08 9.97 -39.50 -0.39 -2.47 16 30 C -0.02 -0.24 9.58 -39.22 -0.38 -0.61 16 31 H 0.07 1.02 4.18 -52.28 -0.22 0.80 16 32 H 0.08 1.64 5.63 -51.93 -0.29 1.35 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.39 9.48 5.49 -40.82 -0.22 9.25 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.07 1.13 8.02 -51.93 -0.42 0.72 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.17 2.16 2.18 -54.91 -0.12 2.04 16 41 H 0.13 1.21 6.28 -52.49 -0.33 0.88 16 42 H 0.07 0.51 7.65 -51.93 -0.40 0.11 16 43 H 0.07 0.54 7.38 -51.93 -0.38 0.15 16 44 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.63 8.03 -51.93 -0.42 0.21 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 50 H 0.14 1.83 7.67 -52.49 -0.40 1.43 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -30.61 393.12 -10.27 -40.88 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -7.29 Total: 12.42 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -3.75 Total: -8.09 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.02 Total: -52.73 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.10 Total: -14.69 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.61 -10.27 -40.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987556429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.628 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds