Wall clock time and date at job start Wed Apr 1 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.87016 * 2 1 4 4 C 1.54323 * 109.88525 * 238.98344 * 2 1 3 5 5 H 1.08997 * 110.71815 * 100.02619 * 4 2 1 6 6 N 1.46496 * 110.71748 * 336.75170 * 4 2 1 7 7 C 1.36937 * 120.00106 * 155.00274 * 6 4 2 8 8 H 1.08004 * 119.99542 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00318 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99864 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47171 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47112 * 120.00053 * 11 9 7 14 14 H 1.48496 * 109.46949 * 239.99970 * 11 9 7 15 15 C 1.55406 * 102.82533 * 218.48189 * 4 2 1 16 16 C 1.54907 * 101.66720 * 35.33739 * 15 4 2 17 17 N 1.47022 * 109.88054 * 121.01188 * 2 1 3 18 18 C 1.34779 * 125.65208 * 298.32174 * 17 2 1 19 19 O 1.21581 * 120.00260 * 181.69026 * 18 17 2 20 20 C 1.47599 * 119.99512 * 1.69652 * 18 17 2 21 21 C 1.39734 * 120.09062 * 350.64669 * 20 18 17 22 22 C 1.37711 * 119.90737 * 179.76807 * 21 20 18 23 23 C 1.38994 * 120.08845 * 0.48183 * 22 21 20 24 24 O 1.35717 * 119.90698 * 179.74331 * 23 22 21 25 25 C 1.42896 * 117.00095 * 0.03013 * 24 23 22 26 26 C 1.53004 * 109.47018 * 179.97438 * 25 24 23 27 27 C 1.52998 * 117.49483 * 243.61873 * 26 25 24 28 28 C 1.52994 * 117.49722 * 174.99791 * 26 25 24 29 29 C 1.38991 * 120.17735 * 359.77310 * 23 22 21 30 30 C 1.37701 * 120.09039 * 359.97438 * 29 23 22 31 31 H 1.09004 * 109.47510 * 289.74677 * 1 2 3 32 32 H 1.08998 * 109.46893 * 169.74879 * 1 2 3 33 33 H 1.08997 * 109.47199 * 49.74944 * 1 2 3 34 34 H 0.97000 * 120.00007 * 334.99907 * 6 4 2 35 35 H 0.97001 * 119.99811 * 179.97438 * 10 9 7 36 36 H 1.09003 * 110.89039 * 277.25947 * 15 4 2 37 37 H 1.09002 * 111.03434 * 153.47422 * 15 4 2 38 38 H 1.09003 * 110.36621 * 204.23412 * 16 15 4 39 39 H 1.08996 * 110.36692 * 81.91519 * 16 15 4 40 40 H 1.07991 * 120.04317 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.94748 * 180.21296 * 22 21 20 42 42 H 1.09004 * 109.46772 * 299.99724 * 25 24 23 43 43 H 1.08993 * 109.47570 * 59.99358 * 25 24 23 44 44 H 1.09002 * 115.54703 * 29.32288 * 26 25 24 45 45 H 1.08999 * 117.50261 * 0.02562 * 27 26 25 46 46 H 1.08999 * 117.49410 * 145.02002 * 27 26 25 47 47 H 1.09004 * 117.49910 * 214.98001 * 28 26 25 48 48 H 1.09001 * 117.50454 * 359.97438 * 28 26 25 49 49 H 1.07997 * 119.95383 * 179.97438 * 29 23 22 50 50 H 1.08002 * 120.04364 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.3529 -0.0432 -2.0200 6 7 1.0472 -1.6831 -1.7497 7 6 1.0607 -2.0576 -3.0668 8 1 1.8140 -1.6630 -3.7326 9 6 0.1063 -2.9442 -3.5461 10 7 -0.8114 -3.4254 -2.7345 11 14 0.1244 -3.4545 -5.3430 12 1 1.2481 -2.7774 -6.0386 13 1 0.2976 -4.9262 -5.4379 14 1 -1.1587 -3.0649 -5.9811 15 6 3.2876 -1.5151 -0.6901 16 6 2.8145 -1.8783 0.7395 17 7 2.0299 -0.7123 1.1850 18 6 1.8084 -0.3577 2.4663 19 8 2.2987 -1.0065 3.3701 20 6 0.9705 0.8182 2.7721 21 6 0.5677 1.6774 1.7464 22 6 -0.2181 2.7708 2.0353 23 6 -0.6021 3.0259 3.3466 24 8 -1.3721 4.1074 3.6279 25 6 -1.7505 4.9381 2.5285 26 6 -2.6101 6.0971 3.0372 27 6 -4.0574 6.1716 2.5465 28 6 -3.0207 7.1690 2.0256 29 6 -0.1990 2.1767 4.3705 30 6 0.5824 1.0784 4.0891 31 1 -0.3634 0.3472 0.9672 32 1 -0.3633 -1.0113 -0.1829 33 1 -0.3633 0.6640 -0.7843 34 1 0.3705 -2.0372 -1.1517 35 1 -1.4786 -4.0447 -3.0696 36 1 4.1655 -0.8697 -0.6591 37 1 3.4853 -2.4128 -1.2761 38 1 3.6716 -2.0318 1.3953 39 1 2.1887 -2.7704 0.7168 40 1 0.8694 1.4822 0.7280 41 1 -0.5326 3.4333 1.2425 42 1 -0.8560 5.3328 2.0467 43 1 -2.3215 4.3511 1.8092 44 1 -2.4072 6.4200 4.0583 45 1 -4.3973 5.3946 1.8618 46 1 -4.8070 6.5434 3.2450 47 1 -3.0884 8.1972 2.3813 48 1 -2.6782 7.0488 0.9978 49 1 -0.4991 2.3786 5.3881 50 1 0.8955 0.4192 4.8853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987556429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:06 Heat of formation + Delta-G solvation = 29.321564 kcal Electronic energy + Delta-G solvation = -30281.105089 eV Core-core repulsion = 26276.267177 eV Total energy + Delta-G solvation = -4004.837912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12563 -40.87629 -39.14745 -38.60952 -37.51515 -35.78980 -33.89296 -33.17467 -31.71194 -30.93132 -30.40578 -28.50590 -26.98123 -25.55469 -24.79503 -23.93555 -23.27030 -22.84770 -21.54457 -21.31729 -20.45531 -19.55665 -19.07831 -18.35507 -17.68048 -17.18484 -16.84609 -16.51709 -16.43282 -16.23505 -15.91154 -15.50949 -15.32281 -14.92020 -14.79686 -14.73809 -14.58240 -14.06560 -14.00033 -13.73964 -13.62826 -13.53066 -13.01963 -12.97146 -12.83286 -12.51973 -12.49181 -12.40432 -12.33584 -12.25333 -12.14259 -11.95623 -11.70672 -11.52859 -11.43179 -11.36592 -10.99694 -10.91449 -10.89645 -9.95853 -9.74780 -9.21305 -8.97649 -7.90401 -5.18310 -0.12850 0.31819 1.50685 1.52271 1.60927 1.76991 1.94787 2.02953 2.59084 2.79969 2.87567 3.37008 3.44327 3.54918 3.71079 3.79924 3.87370 3.88183 3.91184 3.95995 4.06051 4.15410 4.18496 4.22386 4.23611 4.29087 4.36534 4.48758 4.54852 4.55763 4.61327 4.70726 4.79442 4.82378 4.89294 4.98517 5.01769 5.04170 5.07987 5.17140 5.21570 5.23299 5.24226 5.25159 5.33781 5.45189 5.49222 5.60341 5.62622 6.30961 6.33822 6.50199 7.07825 7.38710 8.12280 8.34646 9.32961 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010302 B = 0.002791 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.311742 B =10029.973076 C =12098.527441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.113 3.887 3 H 0.121 0.879 4 C 0.164 3.836 5 H 0.092 0.908 6 N -0.724 5.724 7 C -0.230 4.230 8 H 0.084 0.916 9 C -0.074 4.074 10 N -0.970 5.970 11 Si 0.967 3.033 12 H -0.262 1.262 13 H -0.303 1.303 14 H -0.298 1.298 15 C -0.146 4.146 16 C 0.113 3.887 17 N -0.602 5.602 18 C 0.571 3.429 19 O -0.590 6.590 20 C -0.199 4.199 21 C -0.062 4.062 22 C -0.225 4.225 23 C 0.159 3.841 24 O -0.318 6.318 25 C 0.082 3.918 26 C -0.170 4.170 27 C -0.182 4.182 28 C -0.158 4.158 29 C -0.173 4.173 30 C -0.025 4.025 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.376 0.624 35 H 0.247 0.753 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.180 0.820 41 H 0.159 0.841 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.106 0.894 49 H 0.151 0.849 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.428 22.207 9.728 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.010 3.990 3 H 0.138 0.862 4 C 0.054 3.946 5 H 0.110 0.890 6 N -0.365 5.365 7 C -0.362 4.362 8 H 0.102 0.898 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.797 3.203 12 H -0.186 1.186 13 H -0.230 1.230 14 H -0.226 1.226 15 C -0.187 4.187 16 C -0.009 4.009 17 N -0.334 5.334 18 C 0.363 3.637 19 O -0.473 6.473 20 C -0.202 4.202 21 C -0.079 4.079 22 C -0.244 4.244 23 C 0.112 3.888 24 O -0.231 6.231 25 C 0.007 3.993 26 C -0.188 4.188 27 C -0.219 4.219 28 C -0.195 4.195 29 C -0.191 4.191 30 C -0.044 4.044 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.212 0.788 35 H 0.056 0.944 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.196 0.804 41 H 0.176 0.824 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.129 0.871 48 H 0.124 0.876 49 H 0.168 0.832 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.221 21.960 10.235 24.229 hybrid contribution -0.522 -1.328 -0.701 1.590 sum -0.744 20.632 9.534 22.741 Atomic orbital electron populations 1.22725 0.94591 1.02979 1.02685 1.22473 0.94824 0.96861 0.84821 0.86174 1.21525 0.88547 0.91487 0.93056 0.89017 1.42814 1.33432 1.52322 1.07948 1.19681 1.09647 1.19574 0.87253 0.89801 1.25470 0.98543 1.01279 1.01373 1.69827 1.19649 1.36901 1.35720 0.85162 0.77240 0.76964 0.80909 1.18645 1.23049 1.22573 1.23455 0.99502 1.02070 0.93709 1.22107 0.94636 0.87811 0.96358 1.48523 1.51588 1.28344 1.04948 1.18264 0.80105 0.84437 0.80880 1.90703 1.53824 1.56836 1.45918 1.19683 1.06499 0.98389 0.95674 1.22833 0.92639 0.90979 1.01433 1.21442 1.05404 1.01510 0.95999 1.19399 0.89185 0.86520 0.93676 1.86002 1.64388 1.35350 1.37376 1.22607 0.99063 0.90100 0.87505 1.22098 0.97514 0.98333 1.00884 1.23199 0.91886 1.02899 1.03913 1.23101 1.01862 0.95612 0.98927 1.20465 1.03359 0.95518 0.99780 1.21070 0.92850 0.95157 0.95286 0.90398 0.93777 0.89705 0.78830 0.94362 0.88794 0.90912 0.90815 0.93996 0.80398 0.82401 0.89957 0.90885 0.86983 0.88454 0.87906 0.87106 0.87574 0.83161 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.31 7.46 71.98 0.54 -4.77 16 2 C 0.11 3.25 2.69 45.34 0.12 3.38 16 3 H 0.12 2.64 6.21 -2.39 -0.01 2.62 16 4 C 0.16 5.47 3.50 46.27 0.16 5.63 16 5 H 0.09 2.77 8.09 -2.39 -0.02 2.75 16 6 N -0.72 -32.37 4.54 -316.93 -1.44 -33.81 16 7 C -0.23 -11.53 9.96 84.03 0.84 -10.69 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 9 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 10 N -0.97 -57.24 13.06 21.65 0.28 -56.96 16 11 Si 0.97 44.10 29.55 68.60 2.03 46.13 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 13 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 14 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 15 C -0.15 -4.54 6.77 32.07 0.22 -4.33 16 16 C 0.11 3.87 6.90 86.85 0.60 4.47 16 17 N -0.60 -19.76 3.06 -797.35 -2.44 -22.20 16 18 C 0.57 19.98 7.65 86.71 0.66 20.64 16 19 O -0.59 -24.40 16.62 -3.97 -0.07 -24.47 16 20 C -0.20 -5.75 5.33 -20.08 -0.11 -5.86 16 21 C -0.06 -1.45 6.16 22.51 0.14 -1.31 16 22 C -0.23 -4.49 9.01 22.33 0.20 -4.29 16 23 C 0.16 3.41 6.70 22.63 0.15 3.56 16 24 O -0.32 -6.22 10.12 -90.38 -0.92 -7.13 16 25 C 0.08 1.13 5.02 71.98 0.36 1.49 16 26 C -0.17 -2.06 6.06 -10.79 -0.07 -2.12 16 27 C -0.18 -1.95 10.18 30.59 0.31 -1.63 16 28 C -0.16 -1.37 10.25 30.59 0.31 -1.06 16 29 C -0.17 -3.89 9.97 22.32 0.22 -3.67 16 30 C -0.02 -0.65 9.58 22.51 0.22 -0.44 16 31 H 0.08 2.25 4.18 -2.72 -0.01 2.24 16 32 H 0.04 1.75 5.63 -2.39 -0.01 1.73 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.38 18.84 5.49 -92.71 -0.51 18.33 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.60 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.07 2.43 8.02 -2.39 -0.02 2.41 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.18 3.88 2.18 -5.18 -0.01 3.87 16 41 H 0.16 2.26 6.28 -2.91 -0.02 2.24 16 42 H 0.08 0.92 7.65 -2.39 -0.02 0.91 16 43 H 0.07 0.94 7.38 -2.39 -0.02 0.92 16 44 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 1.06 8.03 -2.39 -0.02 1.04 16 46 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.11 0.73 8.14 -2.38 -0.02 0.72 16 48 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 50 H 0.14 3.62 7.67 -2.91 -0.02 3.59 16 Total: -1.00 -67.54 393.12 3.25 -64.29 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: 0.45 Total: 38.73 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.35 Total: -4.58 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -3.60 Total: -112.97 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.98 Total: -31.60 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.54 3.25 -64.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987556429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.611 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds